ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet25f06 |
|---|---|
| Clone Library Name | barley_pub |
>XTH31_ARATH (P93046) Probable xyloglucan endotransglucosylase/hydrolase protein| 31 precursor (EC 2.4.1.207) (At-XTH31) (XTH-31) (AtXTR8) Length = 293 Score = 65.9 bits (159), Expect = 4e-11 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Frame = -1 Query: 434 RSDYRYQPFVSGFKDFKVAGCEVGAPASCRPVPAGP--GGGLXXXXXXXXXXXXQRAMVY 261 ++DYRYQPFV+ +K+FK+AGC + +SCRP P GL + +VY Sbjct: 218 KADYRYQPFVAKYKNFKLAGCTADSSSSCRPPSPAPMRNRGLSRQQMAALTWAQRNFLVY 277 Query: 260 YYCQDGSKDRSNYPEC 213 YC D +D + PEC Sbjct: 278 NYCHDPKRDHTQTPEC 293
>XTH32_ARATH (Q9SJL9) Probable xyloglucan endotransglucosylase/hydrolase protein| 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) Length = 299 Score = 64.7 bits (156), Expect = 1e-10 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Frame = -1 Query: 437 YRSDYRYQPFVSGFKDFKVAGCEVGAPASCRPVPAGP--GGGLXXXXXXXXXXXXQRAMV 264 Y++DY+YQPF + + +FK GC + A C P+ A P GGL +MV Sbjct: 221 YKADYKYQPFTAKYTNFKALGCTAYSSARCYPLSASPYRSGGLTRQQHQAMRWVQTHSMV 280 Query: 263 YYYCQDGSKDRSNYPEC 213 Y YC+D +D S PEC Sbjct: 281 YNYCKDYKRDHSLTPEC 297
>XTH30_ARATH (Q38908) Probable xyloglucan endotransglucosylase/hydrolase protein| 30 precursor (EC 2.4.1.207) (At-XTH30) (XTH-30) Length = 343 Score = 40.0 bits (92), Expect = 0.003 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Frame = -1 Query: 437 YRSDYRYQPFVSGFKDFKVAGCEVG----APASCRP----VPAGPGGGLXXXXXXXXXXX 282 Y+++Y++ PFV+ FK F + GC V P C + + + Sbjct: 211 YKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCSDSVDFLESQDYSSINSHQRAAMRRF 270 Query: 281 XQRAMVYYYCQDGSKDRSNYPEC*EAPSSSQR 186 QR M Y YC D + PEC P+ R Sbjct: 271 RQRFMYYSYCYDTLRYPEPLPECVIVPAEKDR 302
>XTH6_ARATH (Q8LF99) Probable xyloglucan endotransglucosylase/hydrolase protein| 6 precursor (EC 2.4.1.207) (At-XTH6) (XTH-6) Length = 292 Score = 37.7 bits (86), Expect = 0.012 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Frame = -1 Query: 428 DYRYQPFVSGFKDFKVAGCEVGAPASCRPVPAGPGGGLXXXXXXXXXXXXQR-----AMV 264 D+ PF + +KDF + GC V P C P G R MV Sbjct: 214 DWSKAPFYAYYKDFDIEGCPVPGPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMV 273 Query: 263 YYYCQDGSKDRSNYPEC 213 Y YC D S+ PEC Sbjct: 274 YDYCTDRSRFPVPPPEC 290
>XTH7_ARATH (Q8LER3) Probable xyloglucan endotransglucosylase/hydrolase protein| 7 precursor (EC 2.4.1.207) (At-XTH7) (XTH-7) Length = 293 Score = 35.8 bits (81), Expect = 0.047 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Frame = -1 Query: 413 PFVSGFKDFKVAGCEVGAPASCRPVPAGPGGGLXXXXXXXXXXXXQRA--------MVYY 258 PF + +KDF + GC V PA C PA R+ MVY Sbjct: 218 PFYAYYKDFDIEGCPVPGPADC---PANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYD 274 Query: 257 YCQDGSKDRSNYPEC 213 YC D S+ PEC Sbjct: 275 YCTDKSRFPVPPPEC 289
>XTH27_ARATH (Q8LDS2) Probable xyloglucan endotransglucosylase/hydrolase protein| 27 precursor (EC 2.4.1.207) (At-XTH27) (XTH-27) Length = 333 Score = 32.7 bits (73), Expect = 0.40 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Frame = -1 Query: 437 YRSDYRYQPFVSGFKDFKVAGCEVGAPASCRPVPAGPGGGLXXXXXXXXXXXX------Q 276 Y +Y+Y P+++ F D + GC V G + + Sbjct: 210 YGVNYKYAPYIARFSDLVLHGCPVDPIEQFPRCDEGAAEDMRAAQEITPSQRSKMDVFRR 269 Query: 275 RAMVYYYCQDGSKDRSNYPEC*EAPSSSQR 186 R M Y YC D ++ EC P+ +QR Sbjct: 270 RLMTYSYCYDRARYNVALSECVVNPAEAQR 299
>XTH33_ARATH (Q8LC45) Probable xyloglucan endotransglucosylase/hydrolase protein| 33 precursor (EC 2.4.1.207) (At-XTH33) (XTH-33) Length = 310 Score = 32.3 bits (72), Expect = 0.52 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 15/90 (16%) Frame = -1 Query: 437 YRSDYRYQPFVSGFKDFKVAGCEVGAPASCRPVPAGPGGG---------------LXXXX 303 Y +Y+Y PFV D +++GC V +S P GG L Sbjct: 220 YPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQ 279 Query: 302 XXXXXXXXQRAMVYYYCQDGSKDRSNYPEC 213 ++ M Y YC D + + EC Sbjct: 280 INAMDWARRKLMFYSYCSDKPRYKVMPAEC 309
>1C08_HUMAN (P30505) HLA class I histocompatibility antigen, Cw-8 alpha chain| precursor (MHC class I antigen Cw*8) Length = 366 Score = 31.6 bits (70), Expect = 0.89 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + G QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>1C05_HUMAN (Q9TNN7) HLA class I histocompatibility antigen, Cw-5 alpha chain| precursor (MHC class I antigen Cw*5) Length = 366 Score = 31.6 bits (70), Expect = 0.89 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + G QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>XTH3_ARATH (Q9LJR7) Probable xyloglucan endotransglucosylase/hydrolase protein| 3 precursor (EC 2.4.1.207) (At-XTH3) (XTH-3) Length = 290 Score = 31.6 bits (70), Expect = 0.89 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Frame = -1 Query: 428 DYRYQPFVSGFKDFKVAGCEVGAPA----SCRPV----PAGPGGGLXXXXXXXXXXXXQR 273 ++ Y PF++ F+DF ++GC + + +C AG L + Sbjct: 210 NWSYSPFIAHFRDFALSGCNIDGRSNNVGACESSNYWWNAGNYQRLSGNEQKLYEHVRSK 269 Query: 272 AMVYYYCQDGSKDRSNYPEC 213 M Y YC D SK ++ EC Sbjct: 270 YMNYDYCTDRSKYQTPPREC 289
>XTH29_ARATH (Q8L7H3) Probable xyloglucan endotransglucosylase/hydrolase protein| 29 precursor (EC 2.4.1.207) (At-XTH29) (XTH-29) Length = 357 Score = 30.8 bits (68), Expect = 1.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 428 DYRYQPFVSGFKDFKVAGCEV 366 DY + PFVS FKD + GC V Sbjct: 222 DYTFSPFVSEFKDIALDGCNV 242
>XTH8_ARATH (Q8L9A9) Probable xyloglucan endotransglucosylase/hydrolase protein| 8 precursor (EC 2.4.1.207) (At-XTH8) (XTH-8) Length = 292 Score = 30.8 bits (68), Expect = 1.5 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -1 Query: 434 RSDYRYQPFVSGFKDFKVAGC 372 ++D++ PFVS +KDF V GC Sbjct: 206 KTDWKKAPFVSSYKDFAVEGC 226
>UL43_HHV11 (P10227) Membrane protein UL43| Length = 434 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +3 Query: 168 EGQPPLPL--ARARSFLALWVVGAVLGSILAVVVDHGPLLRPAHG 296 +G+P L A AR F+ +W+ A LG +VV+ GP A G Sbjct: 38 DGRPHLACVGALARGFMHIWLQAATLGFAGSVVMSRGPYANAASG 82
>XTH28_ARATH (Q38909) Probable xyloglucan endotransglucosylase/hydrolase protein| 28 precursor (EC 2.4.1.207) (At-XTH28) (XTH-28) Length = 332 Score = 30.4 bits (67), Expect = 2.0 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 6/90 (6%) Frame = -1 Query: 437 YRSDYRYQPFVSGFKDFKVAGCEVGAP---ASCRPVPAGP---GGGLXXXXXXXXXXXXQ 276 Y +Y+Y P+VS F D + GC V SC+ + Q Sbjct: 210 YGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQ 269 Query: 275 RAMVYYYCQDGSKDRSNYPEC*EAPSSSQR 186 + M Y YC D + + EC P+ ++R Sbjct: 270 KHMTYSYCYDHMRYKVVLSECVVNPAEAKR 299
>XTH_WHEAT (Q41542) Probable xyloglucan endotransglucosylase/hydrolase| precursor (EC 2.4.1.207) Length = 293 Score = 30.0 bits (66), Expect = 2.6 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Frame = -1 Query: 434 RSDYRYQPFVSGFKDFKVAGCEVGAPA------SCRPVPAGPGGGLXXXXXXXXXXXXQR 273 ++D+ PFV+ ++ F V GCE A A R L + Sbjct: 208 KTDWSKAPFVASYRGFHVDGCEASAEAKFCATQGARWWDQPEFQDLDAAQYRRLAWVRKE 267 Query: 272 AMVYYYCQDGSKDRSNYPEC 213 +Y YC D + + PEC Sbjct: 268 HTIYNYCTDHDRYAAMAPEC 287
>1C18_HUMAN (Q29865) HLA class I histocompatibility antigen, Cw-18 alpha chain| precursor (MHC class I antigen Cw*18) Length = 366 Score = 29.6 bits (65), Expect = 3.4 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ VV AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLVVLAVLGAVVAVVM 332
>XTH9_ARATH (Q8LDW9) Xyloglucan endotransglucosylase/hydrolase protein 9| precursor (EC 2.4.1.207) (At-XTH9) (XTH-9) Length = 290 Score = 29.3 bits (64), Expect = 4.4 Identities = 8/23 (34%), Positives = 18/23 (78%) Frame = -1 Query: 434 RSDYRYQPFVSGFKDFKVAGCEV 366 ++D+ + PFV+ +K+F++ CE+ Sbjct: 203 KTDWSHAPFVASYKEFQIDACEI 225
>MTR1_RHOSH (P14751) Modification methylase RsrI (EC 2.1.1.72)| (Adenine-specific methyltransferase RsrI) (M.RsrI) Length = 319 Score = 28.9 bits (63), Expect = 5.8 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = -2 Query: 124 TARQVYDV*CDCIDTVIRSGMYVVQLI 44 T R VYDV CDC+DT+ + VQLI Sbjct: 37 TTRHVYDV-CDCLDTLAKLPDDSVQLI 62
>MURA2_LACPL (Q88Z54) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 (EC| 2.5.1.7) (Enoylpyruvate transferase 2) (UDP-N-acetylglucosamine enolpyruvyl transferase 2) (EPT 2) Length = 426 Score = 28.5 bits (62), Expect = 7.6 Identities = 19/38 (50%), Positives = 21/38 (55%) Frame = +3 Query: 159 TGTEGQPPLPLARARSFLALWVVGAVLGSILAVVVDHG 272 TGTEG L AR FL + VGA + ILA V HG Sbjct: 148 TGTEG-----LHGARIFLDVVSVGATINIILAAVKAHG 180
>1C15_HUMAN (Q07000) HLA class I histocompatibility antigen, Cw-15 alpha chain| precursor (MHC class I antigen Cw*15) Length = 366 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>1C12_HUMAN (P30508) HLA class I histocompatibility antigen, Cw-12 alpha chain| precursor (MHC class I antigen Cw*12) Length = 366 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>1C06_HUMAN (Q29963) HLA class I histocompatibility antigen, Cw-6 alpha chain| precursor (MHC class I antigen Cw*6) Length = 366 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVM 332
>YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulatory protein in| FKH1-STH1 intergenic region Length = 964 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = +3 Query: 18 STPQQPLLGINCTTYIPDRITVSMQSHYTSYTCRAV*EYIRTYASTITGTEGQPPLP 188 S+P QP+L N PD +M+S S + + + TY++ G E + LP Sbjct: 185 SSPIQPVLSSNSKNSTPDEFLPNMKSDSNSASSNREQDSVDTYSNIPVGREIKIILP 241
>1C16_HUMAN (Q29960) HLA class I histocompatibility antigen, Cw-16 alpha chain| precursor (MHC class I antigen Cw*16) Length = 366 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>1C14_HUMAN (P30510) HLA class I histocompatibility antigen, Cw-14 alpha chain| precursor (MHC class I antigen Cw*14) Length = 366 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>1C03_HUMAN (P04222) HLA class I histocompatibility antigen, Cw-3 alpha chain| precursor (MHC class I antigen Cw*3) Length = 366 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>1C02_HUMAN (P30501) HLA class I histocompatibility antigen, Cw-2 alpha chain| precursor (MHC class I antigen Cw*2) Length = 366 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>1C01_HUMAN (P30499) HLA class I histocompatibility antigen, Cw-1 alpha chain| precursor (MHC class I antigen Cw*1) Length = 366 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 108 YTCRAV*EYIRTYASTITGTEGQPPLPLARARSFLALWVVGAVLGSILAVVV 263 YTC E + + QP +P+ + LA+ V AVLG+++AVV+ Sbjct: 281 YTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVM 332
>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein| dumpy-15) Length = 296 Score = 28.1 bits (61), Expect = 9.9 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 Query: 383 VAGCEVGAPASCRPVPAGPGG 321 VA CE P C+P P GP G Sbjct: 131 VAPCEPTTPPPCKPCPQGPPG 151
>BTKL_DROME (P08630) Tyrosine-protein kinase Btk29A (EC 2.7.10.2) (Dsrc28C)| Length = 786 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/64 (25%), Positives = 23/64 (35%) Frame = -1 Query: 413 PFVSGFKDFKVAGCEVGAPASCRPVPAGPGGGLXXXXXXXXXXXXQRAMVYYYCQDGSKD 234 PF F+V CE+ A A+ + G GGG Y + K+ Sbjct: 112 PFAPDGYPFQVGYCEISASANSHQLENGNGGGSGVGIEGQQSGRAVPQYTLYVIANSEKE 171 Query: 233 RSNY 222 RS + Sbjct: 172 RSEW 175
>DDL_HELPY (P56191) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 347 Score = 28.1 bits (61), Expect = 9.9 Identities = 8/24 (33%), Positives = 16/24 (66%) Frame = -1 Query: 437 YRSDYRYQPFVSGFKDFKVAGCEV 366 Y + +PF+ G K++ +AGC++ Sbjct: 200 YSKEVLIEPFIQGVKEYNLAGCKI 223
>DDL_HELPJ (Q9ZLA5) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 347 Score = 28.1 bits (61), Expect = 9.9 Identities = 8/24 (33%), Positives = 16/24 (66%) Frame = -1 Query: 437 YRSDYRYQPFVSGFKDFKVAGCEV 366 Y + +PF+ G K++ +AGC++ Sbjct: 200 YSKEVLIEPFIQGVKEYNLAGCKI 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,205,116 Number of Sequences: 219361 Number of extensions: 1166853 Number of successful extensions: 4108 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3889 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4099 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
