| Clone Name | rbaet25f03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L36093.1|BLYPRX Barley peroxidase mRNA, complete cds Length = 1262 Score = 432 bits (218), Expect = e-118 Identities = 236/242 (97%) Strand = Plus / Minus Query: 19 tcttcattatgtatacaagtattagtaggatcgataataattctccatgcctttgcatga 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1252 tcttcattatgtatacaagtattagtaggatcgataataattctccatgcctttgcatga 1193 Query: 79 aaaagggggaattcgatgttacatatatatgtaaatgcctgcatgatttgctgccgctcg 138 |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1192 gaaagtgggaattcgatgttacatatatatgtagatgcctgcatgatttgctgccgctcg 1133 Query: 139 tacttaaaataaacgttttcaagggctggtgtttatattggccactggttcgccttattc 198 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1132 tacttaaaatagacgttttcaagtgctggtgtttatattggccactggttcgccttattc 1073 Query: 199 attcacgtatcgggctagcgagctgccggctggtaggtatagcagctcgtccgtcgatca 258 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1072 attcacgtatcgtgctagcgagctgccggctggtaggtatagcagctcgtccgtcgatca 1013 Query: 259 cg 260 || Sbjct: 1012 cg 1011
>emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7) Length = 1285 Score = 418 bits (211), Expect = e-114 Identities = 241/251 (96%) Strand = Plus / Minus Query: 10 aagttcatatcttcattatgtatacaagtattagtaggatcgataataattctccatgcc 69 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 aagttcatatattcattatttatacaagtattagtaggatcgataataattctccatgcc 1202 Query: 70 tttgcatgaaaaagggggaattcgatgttacatatatatgtaaatgcctgcatgatttgc 129 ||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||| Sbjct: 1201 tttgcatgagaaagtgggaattcgatgttacatatatatgtagatgcatgcatgatttgc 1142 Query: 130 tgccgctcgtacttaaaataaacgttttcaagggctggtgtttatattggccactggttc 189 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 1141 tgccgctcgtacttaaaatagacgttttcaagtgctggtgtttatattggccactggttc 1082 Query: 190 gccttattcattcacgtatcgggctagcgagctgccggctggtaggtatagcagctcgtc 249 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1081 gccttattcattcacgtgtcgtgctagcgagctgccggctggtaggtatagcagctcgtc 1022 Query: 250 cgtcgatcacg 260 ||||||||||| Sbjct: 1021 cgtcgatcacg 1011
>gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, complete cds Length = 1259 Score = 161 bits (81), Expect = 1e-36 Identities = 181/209 (86%), Gaps = 9/209 (4%) Strand = Plus / Minus Query: 2 aaaaagagaagttcatatct--tcattatgtatacaagtattagtaggatcgataataat 59 |||| |||||||| |||||| | ||||||||||||| ||| |||||||| |||| |||| Sbjct: 1241 aaaaggagaagtttatatctcattattatgtatacaactataagtaggattgatagtaat 1182 Query: 60 tctccatgcctttgcatgaaaaagggggaattcga-tgttacatatatatgtaaatgcct 118 ||||||||||||||||||| |||| |||||||||| ||||||||| |||||| |||| | Sbjct: 1181 tctccatgcctttgcatgagaaagtgggaattcgattgttacata-atatgtggatgcat 1123 Query: 119 gcatgatttgctgccgctcgtacttaaaataaacgttttcaagggctggtgtttatattg 178 |||||||||||||| |||||||| |||| || || ||||||| |||||| ||||||||| Sbjct: 1122 gcatgatttgctgctgctcgtacataaactacac-atttcaagtgctggtatttatattg 1064 Query: 179 gccactggttc----gccttattcattca 203 ||||||||||| |||||||||||||| Sbjct: 1063 gccactggttctgtggccttattcattca 1035
>emb|X56011.1|TAPERO Wheat mRNA for peroxidase Length = 1247 Score = 159 bits (80), Expect = 5e-36 Identities = 145/164 (88%), Gaps = 7/164 (4%) Strand = Plus / Minus Query: 51 gataataattctccatgcctttgcatgaaaaagggggaattcgat-gttacatatatatg 109 |||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| Sbjct: 1227 gatagtaattctccatgcctttgcatgagaaagtgggaattcgatcgttacatatatatg 1168 Query: 110 t--aaatgcctgcatgatttgctgccgctcgtacttaaaataaacgttttcaagggctgg 167 | | |||| ||||||||||||||| ||||||| ||||||| ||| ||||||| ||||| Sbjct: 1167 tgtagatgcatgcatgatttgctgctactcgtacataaaatacacggtttcaagagctgg 1108 Query: 168 tgtttatattggccactggttc----gccttattcattcacgta 207 | |||||||||||||||||||| |||||||||||||||||| Sbjct: 1107 tatttatattggccactggttctgtggccttattcattcacgta 1064
>gb|AY857756.1| Triticum monococcum peroxidase 2 (POX2) mRNA, complete cds Length = 1250 Score = 155 bits (78), Expect = 8e-35 Identities = 150/171 (87%), Gaps = 6/171 (3%) Strand = Plus / Minus Query: 42 agtaggatcgataataattctccatgcctttgcatgaaaaagggggaattcgat-gttac 100 ||||||||||||| |||||||||||||||||||||| |||| |||||| |||| ||||| Sbjct: 1236 agtaggatcgatagcaattctccatgcctttgcatgagaaagtgggaatgcgatcgttac 1177 Query: 101 atatatatgtaaatgcctgcatgatttgctgccgctcgtacttaaaataaacgttttcaa 160 ||||||||||| |||| ||||||||||||||| |||||||| ||||||| | |||||||| Sbjct: 1176 atatatatgtagatgcatgcatgatttgctgctgctcgtacataaaatacaagttttcaa 1117 Query: 161 gg-gctggtgtttatattggccactggttc----gccttattcattcacgt 206 | |||||| || ||||||||||||||||| | ||||||||||||||| Sbjct: 1116 agagctggtattcatattggccactggttctgtggtcttattcattcacgt 1066
>emb|CR533425.1| Paramecium tetraurelia, complete gene Length = 5201 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 acttaaaataaacgttttcaa 160 ||||||||||||||||||||| Sbjct: 1525 acttaaaataaacgttttcaa 1505
>emb|CR386646.1| Gallus gallus finished cDNA, clone ChEST185h7 Length = 1368 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 tgtaaatgcctgcatgatttgctgc 132 |||||||||||| |||||||||||| Sbjct: 303 tgtaaatgcctgtatgatttgctgc 279
>gb|AF153205.1|AF153205 Gallus gallus CD44-like protein mRNA, complete cds Length = 2035 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 tgtaaatgcctgcatgatttgctgc 132 |||||||||||| |||||||||||| Sbjct: 390 tgtaaatgcctgtatgatttgctgc 366
>gb|AC167134.5| Mus musculus chromosome 1, clone RP23-59E7, complete sequence Length = 140039 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgttacatatatatgtaaa 113 |||||||||||||||||||| Sbjct: 55381 atgttacatatatatgtaaa 55400
>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence Length = 219818 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tgttacatatatatgtaaat 114 |||||||||||||||||||| Sbjct: 156878 tgttacatatatatgtaaat 156859
>gb|AY136886.1| Eragrostis dielsii granule-bound starch synthase I (waxy) gene, partial sequence Length = 1272 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 taattctccatgcctttgca 75 |||||||||||||||||||| Sbjct: 668 taattctccatgcctttgca 687
>gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 3 of 3 of the complete sequence Length = 209806 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaaaagagaagttcatatct 21 |||||||||||||||||||| Sbjct: 55731 aaaaagagaagttcatatct 55712
>gb|AE014312.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 9 of 11 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 aattcgatgttacatatatatgta 111 |||| ||||||||||||||||||| Sbjct: 125536 aatttgatgttacatatatatgta 125513
>emb|Z82202.1|HS34P24 Human DNA sequence from clone RP1-34P24 on chromosome 22, complete sequence Length = 105357 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ttacatatatatgtaaatgc 116 |||||||||||||||||||| Sbjct: 12701 ttacatatatatgtaaatgc 12720
>emb|BX571818.3| Human DNA sequence from clone RP11-38J22 on chromosome 1 Contains a novel gene, a ribosomal protein L22 (RPL22) pseudogene, a novel gene, the AVPR1B gene for arginine vasopressin receptor 1B, two novel genes, the CTSE gene for cathepsin E and two CpG islands, complete sequence Length = 170924 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cctttgcatgaaaaaggggg 87 |||||||||||||||||||| Sbjct: 33752 cctttgcatgaaaaaggggg 33733
>emb|AL928874.3| Human DNA sequence from clone RP11-16H4 on chromosome X Contains part of the CNK2 gene for connector enhancer of KSR2 (KIAA0902), complete sequence Length = 132199 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ttatgtatacaagtattagt 44 |||||||||||||||||||| Sbjct: 64488 ttatgtatacaagtattagt 64469
>emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chromosome 13 Contains the 3' end of the ITGBL1 gene for integrin, beta-like 1 (with EGF-like repeat domains), a novel gene, the 3' end of the FGF14 gene for fibroblast growth factor 14 and a high-mobility group box 1 (HMGB1) pseudogene, complete sequence Length = 147607 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaaaagagaagttcatatct 21 |||||||||||||||||||| Sbjct: 107176 aaaaagagaagttcatatct 107157
>emb|AL138954.16| Human DNA sequence from clone RP11-100K21 on chromosome 13q33.1-33.3, complete sequence Length = 144152 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 aattcgatgttacatatatatgta 111 |||| ||||||||||||||||||| Sbjct: 86821 aatttgatgttacatatatatgta 86798
>emb|AL139406.14| Human DNA sequence from clone RP11-425M17 on chromosome 10 Contains the 5' end of gene FLJ11218, the gene for a novel ab-hydrolase associated lipase region domain containing protein (LOC142910), a ribosomal protein L7 (RPL7) pseudogene and a CpG island, complete sequence Length = 184598 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgttacatatatatgtaaa 113 |||||||||||||||||||| Sbjct: 151091 atgttacatatatatgtaaa 151110
>gb|AC091134.7| Homo sapiens chromosome 17, clone RP11-646F1, complete sequence Length = 156583 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 134240 tattagtaggatcgataata 134259
>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence Length = 204309 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tgttacatatatatgtaaat 114 |||||||||||||||||||| Sbjct: 174877 tgttacatatatatgtaaat 174896
>emb|CR615583.1| full-length cDNA clone CS0CAP008YG12 of Thymus of Homo sapiens (human) Length = 948 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 455 tattagtaggatcgataata 436
>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence Length = 194334 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acatatatatgtaaatgcct 118 |||||||||||||||||||| Sbjct: 80876 acatatatatgtaaatgcct 80895
>emb|CR601434.1| full-length cDNA clone CS0CAP001YA18 of Thymus of Homo sapiens (human) Length = 911 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 455 tattagtaggatcgataata 436
>emb|CR594941.1| full-length cDNA clone CS0CAP008YN05 of Thymus of Homo sapiens (human) Length = 909 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 453 tattagtaggatcgataata 434
>emb|CR592128.1| full-length cDNA clone CS0DN001YC07 of Adult brain of Homo sapiens (human) Length = 864 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 408 tattagtaggatcgataata 389
>gb|AC069216.13| Homo sapiens 3 BAC RP11-621D6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150145 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ttacatatatatgtaaatgc 116 |||||||||||||||||||| Sbjct: 13270 ttacatatatatgtaaatgc 13251
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 tgtttatattggccactggt 187 |||||||||||||||||||| Sbjct: 1550329 tgtttatattggccactggt 1550348
>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence Length = 199866 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ttacatatatatgtaaatgc 116 |||||||||||||||||||| Sbjct: 27519 ttacatatatatgtaaatgc 27500
>emb|BX855596.4| Mouse DNA sequence from clone RP23-89N14 on chromosome 4, complete sequence Length = 35553 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gttacatatatatgtaaatg 115 |||||||||||||||||||| Sbjct: 11824 gttacatatatatgtaaatg 11843
>gb|AF227907.1|AF227907 Homo sapiens chromosome 17 sequence containing mitochondrial genome insertion Length = 14722 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 6494 tattagtaggatcgataata 6475
>gb|AC107675.13| Mus musculus chromosome 1, clone RP24-471N7, complete sequence Length = 127374 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atgttacatatatatgtaaa 113 |||||||||||||||||||| Sbjct: 24878 atgttacatatatatgtaaa 24859
>gb|AC131055.10| Homo sapiens chromosome 17, clone RP11-846F4, complete sequence Length = 187223 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 149586 tattagtaggatcgataata 149605
>gb|AC107940.13| Homo sapiens chromosome 17, clone RP11-158C19, complete sequence Length = 164186 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 98285 tattagtaggatcgataata 98266
>gb|AC132825.8| Homo sapiens chromosome 8, clone RP13-929K23, complete sequence Length = 137261 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 112470 tattagtaggatcgataata 112451
>ref|XM_551145.1| Anopheles gambiae str. PEST ENSANGP00000026556 (ENSANGG00000019654), partial mRNA Length = 9477 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 atagcagctcgtccgtcgat 256 |||||||||||||||||||| Sbjct: 775 atagcagctcgtccgtcgat 756
>ref|XM_321432.2| Anopheles gambiae str. PEST ENSANGP00000022143 (ENSANGG00000019654), partial mRNA Length = 14460 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 atagcagctcgtccgtcgat 256 |||||||||||||||||||| Sbjct: 5743 atagcagctcgtccgtcgat 5724
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 tgtttatattggccactggt 187 |||||||||||||||||||| Sbjct: 1367380 tgtttatattggccactggt 1367361
>emb|AL672068.13| Mouse DNA sequence from clone RP23-69M9 on chromosome X, complete sequence Length = 217917 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acatatatatgtaaatgcct 118 |||||||||||||||||||| Sbjct: 102997 acatatatatgtaaatgcct 103016 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 acatatatatgtaaatgcct 118 |||||||||||||||||||| Sbjct: 25833 acatatatatgtaaatgcct 25814
>gb|AC132822.3| Homo sapiens chromosome 17, clone RP13-885L6, complete sequence Length = 133778 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattagtaggatcgataata 57 |||||||||||||||||||| Sbjct: 102144 tattagtaggatcgataata 102125
>emb|AL805902.5| Mouse DNA sequence from clone RP23-224M4 on chromosome X, complete sequence Length = 75376 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atgttacatatatatgtaaa 113 |||||||||||||||||||| Sbjct: 56614 atgttacatatatatgtaaa 56633 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,074,112 Number of Sequences: 3902068 Number of extensions: 3074112 Number of successful extensions: 72706 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72595 Number of HSP's gapped (non-prelim): 103 length of query: 260 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 238 effective length of database: 17,147,199,772 effective search space: 4081033545736 effective search space used: 4081033545736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)