ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet25f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L36093.1|BLYPRX Barley peroxidase mRNA, complete cds 432 e-118
2emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7) 418 e-114
3gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, com... 161 1e-36
4emb|X56011.1|TAPERO Wheat mRNA for peroxidase 159 5e-36
5gb|AY857756.1| Triticum monococcum peroxidase 2 (POX2) mRNA, com... 155 8e-35
6emb|CR533425.1| Paramecium tetraurelia, complete gene 42 0.85
7emb|CR386646.1| Gallus gallus finished cDNA, clone ChEST185h7 42 0.85
8gb|AF153205.1|AF153205 Gallus gallus CD44-like protein mRNA, com... 42 0.85
9gb|AC167134.5| Mus musculus chromosome 1, clone RP23-59E7, compl... 40 3.4
10gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 40 3.4
11gb|AY136886.1| Eragrostis dielsii granule-bound starch synthase ... 40 3.4
12gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 3.4
13gb|AE014312.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 3.4
14emb|Z82202.1|HS34P24 Human DNA sequence from clone RP1-34P24 on ... 40 3.4
15emb|BX571818.3| Human DNA sequence from clone RP11-38J22 on chro... 40 3.4
16emb|AL928874.3| Human DNA sequence from clone RP11-16H4 on chrom... 40 3.4
17emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chr... 40 3.4
18emb|AL138954.16| Human DNA sequence from clone RP11-100K21 on ch... 40 3.4
19emb|AL139406.14| Human DNA sequence from clone RP11-425M17 on ch... 40 3.4
20gb|AC091134.7| Homo sapiens chromosome 17, clone RP11-646F1, com... 40 3.4
21gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome... 40 3.4
22emb|CR615583.1| full-length cDNA clone CS0CAP008YG12 of Thymus o... 40 3.4
23gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, c... 40 3.4
24emb|CR601434.1| full-length cDNA clone CS0CAP001YA18 of Thymus o... 40 3.4
25emb|CR594941.1| full-length cDNA clone CS0CAP008YN05 of Thymus o... 40 3.4
26emb|CR592128.1| full-length cDNA clone CS0DN001YC07 of Adult bra... 40 3.4
27gb|AC069216.13| Homo sapiens 3 BAC RP11-621D6 (Roswell Park Canc... 40 3.4
28gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 3.4
29gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence 40 3.4
30emb|BX855596.4| Mouse DNA sequence from clone RP23-89N14 on chro... 40 3.4
31gb|AF227907.1|AF227907 Homo sapiens chromosome 17 sequence conta... 40 3.4
32gb|AC107675.13| Mus musculus chromosome 1, clone RP24-471N7, com... 40 3.4
33gb|AC131055.10| Homo sapiens chromosome 17, clone RP11-846F4, co... 40 3.4
34gb|AC107940.13| Homo sapiens chromosome 17, clone RP11-158C19, c... 40 3.4
35gb|AC132825.8| Homo sapiens chromosome 8, clone RP13-929K23, com... 40 3.4
36ref|XM_551145.1| Anopheles gambiae str. PEST ENSANGP00000026556 ... 40 3.4
37ref|XM_321432.2| Anopheles gambiae str. PEST ENSANGP00000022143 ... 40 3.4
38gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 3.4
39emb|AL672068.13| Mouse DNA sequence from clone RP23-69M9 on chro... 40 3.4
40gb|AC132822.3| Homo sapiens chromosome 17, clone RP13-885L6, com... 40 3.4
41emb|AL805902.5| Mouse DNA sequence from clone RP23-224M4 on chro... 40 3.4

>gb|L36093.1|BLYPRX Barley peroxidase mRNA, complete cds
          Length = 1262

 Score =  432 bits (218), Expect = e-118
 Identities = 236/242 (97%)
 Strand = Plus / Minus

                                                                        
Query: 19   tcttcattatgtatacaagtattagtaggatcgataataattctccatgcctttgcatga 78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 tcttcattatgtatacaagtattagtaggatcgataataattctccatgcctttgcatga 1193

                                                                        
Query: 79   aaaagggggaattcgatgttacatatatatgtaaatgcctgcatgatttgctgccgctcg 138
             |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1192 gaaagtgggaattcgatgttacatatatatgtagatgcctgcatgatttgctgccgctcg 1133

                                                                        
Query: 139  tacttaaaataaacgttttcaagggctggtgtttatattggccactggttcgccttattc 198
            ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1132 tacttaaaatagacgttttcaagtgctggtgtttatattggccactggttcgccttattc 1073

                                                                        
Query: 199  attcacgtatcgggctagcgagctgccggctggtaggtatagcagctcgtccgtcgatca 258
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 attcacgtatcgtgctagcgagctgccggctggtaggtatagcagctcgtccgtcgatca 1013

              
Query: 259  cg 260
            ||
Sbjct: 1012 cg 1011



to top

>emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7)
          Length = 1285

 Score =  418 bits (211), Expect = e-114
 Identities = 241/251 (96%)
 Strand = Plus / Minus

                                                                        
Query: 10   aagttcatatcttcattatgtatacaagtattagtaggatcgataataattctccatgcc 69
            |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aagttcatatattcattatttatacaagtattagtaggatcgataataattctccatgcc 1202

                                                                        
Query: 70   tttgcatgaaaaagggggaattcgatgttacatatatatgtaaatgcctgcatgatttgc 129
            ||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1201 tttgcatgagaaagtgggaattcgatgttacatatatatgtagatgcatgcatgatttgc 1142

                                                                        
Query: 130  tgccgctcgtacttaaaataaacgttttcaagggctggtgtttatattggccactggttc 189
            |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 1141 tgccgctcgtacttaaaatagacgttttcaagtgctggtgtttatattggccactggttc 1082

                                                                        
Query: 190  gccttattcattcacgtatcgggctagcgagctgccggctggtaggtatagcagctcgtc 249
            ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gccttattcattcacgtgtcgtgctagcgagctgccggctggtaggtatagcagctcgtc 1022

                       
Query: 250  cgtcgatcacg 260
            |||||||||||
Sbjct: 1021 cgtcgatcacg 1011



to top

>gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, complete cds
          Length = 1259

 Score =  161 bits (81), Expect = 1e-36
 Identities = 181/209 (86%), Gaps = 9/209 (4%)
 Strand = Plus / Minus

                                                                        
Query: 2    aaaaagagaagttcatatct--tcattatgtatacaagtattagtaggatcgataataat 59
            |||| |||||||| ||||||  | ||||||||||||| ||| |||||||| |||| ||||
Sbjct: 1241 aaaaggagaagtttatatctcattattatgtatacaactataagtaggattgatagtaat 1182

                                                                        
Query: 60   tctccatgcctttgcatgaaaaagggggaattcga-tgttacatatatatgtaaatgcct 118
            ||||||||||||||||||| |||| |||||||||| ||||||||| ||||||  |||| |
Sbjct: 1181 tctccatgcctttgcatgagaaagtgggaattcgattgttacata-atatgtggatgcat 1123

                                                                        
Query: 119  gcatgatttgctgccgctcgtacttaaaataaacgttttcaagggctggtgtttatattg 178
            |||||||||||||| |||||||| |||| || ||  ||||||| |||||| |||||||||
Sbjct: 1122 gcatgatttgctgctgctcgtacataaactacac-atttcaagtgctggtatttatattg 1064

                                         
Query: 179  gccactggttc----gccttattcattca 203
            |||||||||||    ||||||||||||||
Sbjct: 1063 gccactggttctgtggccttattcattca 1035



to top

>emb|X56011.1|TAPERO Wheat mRNA for peroxidase
          Length = 1247

 Score =  159 bits (80), Expect = 5e-36
 Identities = 145/164 (88%), Gaps = 7/164 (4%)
 Strand = Plus / Minus

                                                                        
Query: 51   gataataattctccatgcctttgcatgaaaaagggggaattcgat-gttacatatatatg 109
            |||| ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct: 1227 gatagtaattctccatgcctttgcatgagaaagtgggaattcgatcgttacatatatatg 1168

                                                                        
Query: 110  t--aaatgcctgcatgatttgctgccgctcgtacttaaaataaacgttttcaagggctgg 167
            |  | |||| |||||||||||||||  ||||||| ||||||| ||| ||||||| |||||
Sbjct: 1167 tgtagatgcatgcatgatttgctgctactcgtacataaaatacacggtttcaagagctgg 1108

                                                        
Query: 168  tgtttatattggccactggttc----gccttattcattcacgta 207
            | ||||||||||||||||||||    ||||||||||||||||||
Sbjct: 1107 tatttatattggccactggttctgtggccttattcattcacgta 1064



to top

>gb|AY857756.1| Triticum monococcum peroxidase 2 (POX2) mRNA, complete cds
          Length = 1250

 Score =  155 bits (78), Expect = 8e-35
 Identities = 150/171 (87%), Gaps = 6/171 (3%)
 Strand = Plus / Minus

                                                                        
Query: 42   agtaggatcgataataattctccatgcctttgcatgaaaaagggggaattcgat-gttac 100
            |||||||||||||  |||||||||||||||||||||| |||| |||||| |||| |||||
Sbjct: 1236 agtaggatcgatagcaattctccatgcctttgcatgagaaagtgggaatgcgatcgttac 1177

                                                                        
Query: 101  atatatatgtaaatgcctgcatgatttgctgccgctcgtacttaaaataaacgttttcaa 160
            ||||||||||| |||| ||||||||||||||| |||||||| ||||||| | ||||||||
Sbjct: 1176 atatatatgtagatgcatgcatgatttgctgctgctcgtacataaaatacaagttttcaa 1117

                                                               
Query: 161  gg-gctggtgtttatattggccactggttc----gccttattcattcacgt 206
             | |||||| || |||||||||||||||||    | |||||||||||||||
Sbjct: 1116 agagctggtattcatattggccactggttctgtggtcttattcattcacgt 1066



to top

>emb|CR533425.1| Paramecium tetraurelia, complete gene
          Length = 5201

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 140  acttaaaataaacgttttcaa 160
            |||||||||||||||||||||
Sbjct: 1525 acttaaaataaacgttttcaa 1505



to top

>emb|CR386646.1| Gallus gallus finished cDNA, clone ChEST185h7
          Length = 1368

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 108 tgtaaatgcctgcatgatttgctgc 132
           |||||||||||| ||||||||||||
Sbjct: 303 tgtaaatgcctgtatgatttgctgc 279



to top

>gb|AF153205.1|AF153205 Gallus gallus CD44-like protein mRNA, complete cds
          Length = 2035

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 108 tgtaaatgcctgcatgatttgctgc 132
           |||||||||||| ||||||||||||
Sbjct: 390 tgtaaatgcctgtatgatttgctgc 366



to top

>gb|AC167134.5| Mus musculus chromosome 1, clone RP23-59E7, complete sequence
          Length = 140039

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    atgttacatatatatgtaaa 113
             ||||||||||||||||||||
Sbjct: 55381 atgttacatatatatgtaaa 55400



to top

>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tgttacatatatatgtaaat 114
              ||||||||||||||||||||
Sbjct: 156878 tgttacatatatatgtaaat 156859



to top

>gb|AY136886.1| Eragrostis dielsii granule-bound starch synthase I (waxy) gene,
           partial sequence
          Length = 1272

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  taattctccatgcctttgca 75
           ||||||||||||||||||||
Sbjct: 668 taattctccatgcctttgca 687



to top

>gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 3
             of 3 of the complete sequence
          Length = 209806

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aaaaagagaagttcatatct 21
             ||||||||||||||||||||
Sbjct: 55731 aaaaagagaagttcatatct 55712



to top

>gb|AE014312.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 9 of
              11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 88     aattcgatgttacatatatatgta 111
              |||| |||||||||||||||||||
Sbjct: 125536 aatttgatgttacatatatatgta 125513



to top

>emb|Z82202.1|HS34P24 Human DNA sequence from clone RP1-34P24 on chromosome 22, complete
             sequence
          Length = 105357

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ttacatatatatgtaaatgc 116
             ||||||||||||||||||||
Sbjct: 12701 ttacatatatatgtaaatgc 12720



to top

>emb|BX571818.3| Human DNA sequence from clone RP11-38J22 on chromosome 1 Contains a
             novel gene, a ribosomal protein L22 (RPL22) pseudogene, a
             novel gene, the AVPR1B gene for arginine vasopressin
             receptor 1B, two novel genes, the CTSE gene for cathepsin
             E and two CpG islands, complete sequence
          Length = 170924

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    cctttgcatgaaaaaggggg 87
             ||||||||||||||||||||
Sbjct: 33752 cctttgcatgaaaaaggggg 33733



to top

>emb|AL928874.3| Human DNA sequence from clone RP11-16H4 on chromosome X Contains part
             of the CNK2 gene for connector enhancer of KSR2
             (KIAA0902), complete sequence
          Length = 132199

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ttatgtatacaagtattagt 44
             ||||||||||||||||||||
Sbjct: 64488 ttatgtatacaagtattagt 64469



to top

>emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chromosome 13 Contains the 3'
              end of the ITGBL1 gene for integrin, beta-like 1 (with
              EGF-like repeat domains), a novel gene, the 3' end of the
              FGF14 gene for fibroblast growth factor 14 and a
              high-mobility group box 1 (HMGB1) pseudogene, complete
              sequence
          Length = 147607

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      aaaaagagaagttcatatct 21
              ||||||||||||||||||||
Sbjct: 107176 aaaaagagaagttcatatct 107157



to top

>emb|AL138954.16| Human DNA sequence from clone RP11-100K21 on chromosome 13q33.1-33.3,
             complete sequence
          Length = 144152

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 88    aattcgatgttacatatatatgta 111
             |||| |||||||||||||||||||
Sbjct: 86821 aatttgatgttacatatatatgta 86798



to top

>emb|AL139406.14| Human DNA sequence from clone RP11-425M17 on chromosome 10 Contains the
              5' end of gene FLJ11218, the gene for a novel ab-hydrolase
              associated lipase region domain containing protein
              (LOC142910), a ribosomal protein L7 (RPL7) pseudogene and a
              CpG island, complete sequence
          Length = 184598

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     atgttacatatatatgtaaa 113
              ||||||||||||||||||||
Sbjct: 151091 atgttacatatatatgtaaa 151110



to top

>gb|AC091134.7| Homo sapiens chromosome 17, clone RP11-646F1, complete sequence
          Length = 156583

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tattagtaggatcgataata 57
              ||||||||||||||||||||
Sbjct: 134240 tattagtaggatcgataata 134259



to top

>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence
          Length = 204309

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     tgttacatatatatgtaaat 114
              ||||||||||||||||||||
Sbjct: 174877 tgttacatatatatgtaaat 174896



to top

>emb|CR615583.1| full-length cDNA clone CS0CAP008YG12 of Thymus of Homo sapiens
           (human)
          Length = 948

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  tattagtaggatcgataata 57
           ||||||||||||||||||||
Sbjct: 455 tattagtaggatcgataata 436



to top

>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence
          Length = 194334

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    acatatatatgtaaatgcct 118
             ||||||||||||||||||||
Sbjct: 80876 acatatatatgtaaatgcct 80895



to top

>emb|CR601434.1| full-length cDNA clone CS0CAP001YA18 of Thymus of Homo sapiens
           (human)
          Length = 911

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  tattagtaggatcgataata 57
           ||||||||||||||||||||
Sbjct: 455 tattagtaggatcgataata 436



to top

>emb|CR594941.1| full-length cDNA clone CS0CAP008YN05 of Thymus of Homo sapiens
           (human)
          Length = 909

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  tattagtaggatcgataata 57
           ||||||||||||||||||||
Sbjct: 453 tattagtaggatcgataata 434



to top

>emb|CR592128.1| full-length cDNA clone CS0DN001YC07 of Adult brain of Homo sapiens
           (human)
          Length = 864

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  tattagtaggatcgataata 57
           ||||||||||||||||||||
Sbjct: 408 tattagtaggatcgataata 389



to top

>gb|AC069216.13| Homo sapiens 3 BAC RP11-621D6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 150145

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    ttacatatatatgtaaatgc 116
             ||||||||||||||||||||
Sbjct: 13270 ttacatatatatgtaaatgc 13251



to top

>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     tgtttatattggccactggt 187
               ||||||||||||||||||||
Sbjct: 1550329 tgtttatattggccactggt 1550348



to top

>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence
          Length = 199866

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    ttacatatatatgtaaatgc 116
             ||||||||||||||||||||
Sbjct: 27519 ttacatatatatgtaaatgc 27500



to top

>emb|BX855596.4| Mouse DNA sequence from clone RP23-89N14 on chromosome 4, complete
             sequence
          Length = 35553

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gttacatatatatgtaaatg 115
             ||||||||||||||||||||
Sbjct: 11824 gttacatatatatgtaaatg 11843



to top

>gb|AF227907.1|AF227907 Homo sapiens chromosome 17 sequence containing mitochondrial genome
            insertion
          Length = 14722

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   tattagtaggatcgataata 57
            ||||||||||||||||||||
Sbjct: 6494 tattagtaggatcgataata 6475



to top

>gb|AC107675.13| Mus musculus chromosome 1, clone RP24-471N7, complete sequence
          Length = 127374

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    atgttacatatatatgtaaa 113
             ||||||||||||||||||||
Sbjct: 24878 atgttacatatatatgtaaa 24859



to top

>gb|AC131055.10| Homo sapiens chromosome 17, clone RP11-846F4, complete sequence
          Length = 187223

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tattagtaggatcgataata 57
              ||||||||||||||||||||
Sbjct: 149586 tattagtaggatcgataata 149605



to top

>gb|AC107940.13| Homo sapiens chromosome 17, clone RP11-158C19, complete sequence
          Length = 164186

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    tattagtaggatcgataata 57
             ||||||||||||||||||||
Sbjct: 98285 tattagtaggatcgataata 98266



to top

>gb|AC132825.8| Homo sapiens chromosome 8, clone RP13-929K23, complete sequence
          Length = 137261

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tattagtaggatcgataata 57
              ||||||||||||||||||||
Sbjct: 112470 tattagtaggatcgataata 112451



to top

>ref|XM_551145.1| Anopheles gambiae str. PEST ENSANGP00000026556
           (ENSANGG00000019654), partial mRNA
          Length = 9477

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 237 atagcagctcgtccgtcgat 256
           ||||||||||||||||||||
Sbjct: 775 atagcagctcgtccgtcgat 756



to top

>ref|XM_321432.2| Anopheles gambiae str. PEST ENSANGP00000022143 (ENSANGG00000019654),
            partial mRNA
          Length = 14460

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  atagcagctcgtccgtcgat 256
            ||||||||||||||||||||
Sbjct: 5743 atagcagctcgtccgtcgat 5724



to top

>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 168     tgtttatattggccactggt 187
               ||||||||||||||||||||
Sbjct: 1367380 tgtttatattggccactggt 1367361



to top

>emb|AL672068.13| Mouse DNA sequence from clone RP23-69M9 on chromosome X, complete
              sequence
          Length = 217917

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     acatatatatgtaaatgcct 118
              ||||||||||||||||||||
Sbjct: 102997 acatatatatgtaaatgcct 103016



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    acatatatatgtaaatgcct 118
             ||||||||||||||||||||
Sbjct: 25833 acatatatatgtaaatgcct 25814



to top

>gb|AC132822.3| Homo sapiens chromosome 17, clone RP13-885L6, complete sequence
          Length = 133778

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tattagtaggatcgataata 57
              ||||||||||||||||||||
Sbjct: 102144 tattagtaggatcgataata 102125



to top

>emb|AL805902.5| Mouse DNA sequence from clone RP23-224M4 on chromosome X, complete
             sequence
          Length = 75376

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    atgttacatatatatgtaaa 113
             ||||||||||||||||||||
Sbjct: 56614 atgttacatatatatgtaaa 56633


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,074,112
Number of Sequences: 3902068
Number of extensions: 3074112
Number of successful extensions: 72706
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72595
Number of HSP's gapped (non-prelim): 103
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top