ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet25e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK059989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 3e-69
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 165 1e-37
3gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome... 165 1e-37
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 165 1e-37
5ref|NM_121816.2| Arabidopsis thaliana NCBP (NOVEL CAP-BINDING PR... 100 7e-18
6gb|AY114562.1| Arabidopsis thaliana eukaryotic cap-binding prote... 100 7e-18
7gb|AY093208.1| Arabidopsis thaliana cap-binding protein (At5g181... 100 7e-18
8gb|AY092964.1| Arabidopsis thaliana eukaryotic cap-binding prote... 100 7e-18
9gb|AF028809.1|AF028809 Arabidopsis thaliana novel cap-binding pr... 100 7e-18
10emb|BX832048.1|CNS0A12P Arabidopsis thaliana Full-length cDNA Co... 100 7e-18
11emb|BX831907.1|CNS0A178 Arabidopsis thaliana Full-length cDNA Co... 100 7e-18
12emb|BX831776.1|CNS0A10R Arabidopsis thaliana Full-length cDNA Co... 100 7e-18
13emb|BX833226.1|CNS0A0B0 Arabidopsis thaliana Full-length cDNA Co... 100 7e-18
14dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 74 4e-10
15gb|AC156827.4| Medicago truncatula clone mth2-15c17, complete se... 72 1e-09
16ref|NM_121815.2| Arabidopsis thaliana CSD3 (COPPER/ZINC SUPEROXI... 64 4e-07
17gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thali... 42 1.3
18ref|XM_467121.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
19gb|AC141885.3| Mus musculus BAC clone RP24-104I20 from chromosom... 40 5.3
20ref|XM_760989.1| Theileria parva strain Muguga chromosome 1 hypo... 40 5.3
21emb|AL441927.10| Human DNA sequence from clone RP1-294P19 on chr... 40 5.3
22gb|AC182435.3| Mus musculus chromosome 8, clone wi1-1119F24, com... 40 5.3
23emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 5.3
24gb|AC093852.3| Homo sapiens BAC clone RP11-500G9 from 4, complet... 40 5.3
25gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, compl... 40 5.3
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
27dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
28dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
29gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, co... 40 5.3
30gb|AC172623.3| Mus musculus chromosome 8, clone RP23-478A9, comp... 40 5.3
31gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 5.3
32emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 5.3
33gb|AC129214.5| Mus musculus BAC clone RP24-426N11 from 16, compl... 40 5.3
34gb|AC132611.3| Mus musculus BAC clone RP23-375I21 from 17, compl... 40 5.3
35dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.3

>dbj|AK059989.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A08, full
           insert sequence
          Length = 923

 Score =  270 bits (136), Expect = 3e-69
 Identities = 217/244 (88%)
 Strand = Plus / Minus

                                                                       
Query: 151 catggaggttaacctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggca 210
           ||||||| ||| ||||||| ||| ||||||||||| || ||||| || ||||| || |||
Sbjct: 776 catggagcttatcctctcaaccacgtgttcctgtaagatgagttatcccgcagtgaagca 717

                                                                       
Query: 211 tcatgtggtttgtactccatcagataggtgtgcggcagcttcaagtgcctcttaattgag 270
           ||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||| 
Sbjct: 716 tcatgtggtttgtactccatcagatagctgtgtggcagcttcagatgcctcttaattgaa 657

                                                                       
Query: 271 tctcttaatgtcatcacagcctggtggtctgatgcattccgattccagacactcaggatg 330
           ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || |||
Sbjct: 656 tctcttaatgtcatcacagcctggtggtcagatgcattacggttccagacacttagaatg 597

                                                                       
Query: 331 tcttcattgaaacgacaacttagcacaatgccacaaacatcatcactataatcaagttgg 390
           || ||||||||||||  ||| || |||| |||||||||||||||||||||||||||||| 
Sbjct: 596 tcctcattgaaacgaacactgagtacaacgccacaaacatcatcactataatcaagttga 537

               
Query: 391 tcac 394
           ||||
Sbjct: 536 tcac 533



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  165 bits (83), Expect = 1e-37
 Identities = 128/143 (89%)
 Strand = Plus / Plus

                                                                           
Query: 151     catggaggttaacctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggca 210
               ||||||| ||| ||||||| ||| ||||||||||| || ||||| || ||||| || |||
Sbjct: 8569593 catggagcttatcctctcaaccacgtgttcctgtaagatgagttatcccgcagtgaagca 8569652

                                                                           
Query: 211     tcatgtggtttgtactccatcagataggtgtgcggcagcttcaagtgcctcttaattgag 270
               ||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||| 
Sbjct: 8569653 tcatgtggtttgtactccatcagatagctgtgtggcagcttcagatgcctcttaattgaa 8569712

                                      
Query: 271     tctcttaatgtcatcacagcctg 293
               |||||||||||||||||||||||
Sbjct: 8569713 tctcttaatgtcatcacagcctg 8569735



 Score =  113 bits (57), Expect = 4e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                           
Query: 290     cctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaacgacaac 349
               |||||||||| |||||||| || ||||||||||| || ||||| ||||||||||||  ||
Sbjct: 8569813 cctggtggtcagatgcattacggttccagacacttagaatgtcctcattgaaacgaacac 8569872

                                                            
Query: 350     ttagcacaatgccacaaacatcatcactataatcaagttggtcac 394
               | || |||| |||||||||||||||||||||||||||||| ||||
Sbjct: 8569873 tgagtacaacgccacaaacatcatcactataatcaagttgatcac 8569917



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>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02,
             complete sequence
          Length = 137327

 Score =  165 bits (83), Expect = 1e-37
 Identities = 128/143 (89%)
 Strand = Plus / Plus

                                                                         
Query: 151   catggaggttaacctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggca 210
             ||||||| ||| ||||||| ||| ||||||||||| || ||||| || ||||| || |||
Sbjct: 50565 catggagcttatcctctcaaccacgtgttcctgtaagatgagttatcccgcagtgaagca 50624

                                                                         
Query: 211   tcatgtggtttgtactccatcagataggtgtgcggcagcttcaagtgcctcttaattgag 270
             ||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||| 
Sbjct: 50625 tcatgtggtttgtactccatcagatagctgtgtggcagcttcagatgcctcttaattgaa 50684

                                    
Query: 271   tctcttaatgtcatcacagcctg 293
             |||||||||||||||||||||||
Sbjct: 50685 tctcttaatgtcatcacagcctg 50707



 Score =  113 bits (57), Expect = 4e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                         
Query: 290   cctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaacgacaac 349
             |||||||||| |||||||| || ||||||||||| || ||||| ||||||||||||  ||
Sbjct: 50785 cctggtggtcagatgcattacggttccagacacttagaatgtcctcattgaaacgaacac 50844

                                                          
Query: 350   ttagcacaatgccacaaacatcatcactataatcaagttggtcac 394
             | || |||| |||||||||||||||||||||||||||||| ||||
Sbjct: 50845 tgagtacaacgccacaaacatcatcactataatcaagttgatcac 50889



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  165 bits (83), Expect = 1e-37
 Identities = 128/143 (89%)
 Strand = Plus / Plus

                                                                           
Query: 151     catggaggttaacctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggca 210
               ||||||| ||| ||||||| ||| ||||||||||| || ||||| || ||||| || |||
Sbjct: 8567428 catggagcttatcctctcaaccacgtgttcctgtaagatgagttatcccgcagtgaagca 8567487

                                                                           
Query: 211     tcatgtggtttgtactccatcagataggtgtgcggcagcttcaagtgcctcttaattgag 270
               ||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||| 
Sbjct: 8567488 tcatgtggtttgtactccatcagatagctgtgtggcagcttcagatgcctcttaattgaa 8567547

                                      
Query: 271     tctcttaatgtcatcacagcctg 293
               |||||||||||||||||||||||
Sbjct: 8567548 tctcttaatgtcatcacagcctg 8567570



 Score =  113 bits (57), Expect = 4e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                           
Query: 290     cctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaacgacaac 349
               |||||||||| |||||||| || ||||||||||| || ||||| ||||||||||||  ||
Sbjct: 8567648 cctggtggtcagatgcattacggttccagacacttagaatgtcctcattgaaacgaacac 8567707

                                                            
Query: 350     ttagcacaatgccacaaacatcatcactataatcaagttggtcac 394
               | || |||| |||||||||||||||||||||||||||||| ||||
Sbjct: 8567708 tgagtacaacgccacaaacatcatcactataatcaagttgatcac 8567752



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>ref|NM_121816.2| Arabidopsis thaliana NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding
           / translation initiation factor AT5G18110 (NCBP) mRNA,
           complete cds
          Length = 1120

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 755 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 696

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 695 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 636

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 635 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 576

             
Query: 343 cg 344
           ||
Sbjct: 575 cg 574



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>gb|AY114562.1| Arabidopsis thaliana eukaryotic cap-binding protein (At5g18110)
           mRNA, complete cds
          Length = 711

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 662 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 603

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 602 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 543

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 542 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 483

             
Query: 343 cg 344
           ||
Sbjct: 482 cg 481



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>gb|AY093208.1| Arabidopsis thaliana cap-binding protein (At5g18110) mRNA, complete
           cds
          Length = 1034

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 751 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 692

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 691 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 632

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 631 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 572

             
Query: 343 cg 344
           ||
Sbjct: 571 cg 570



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>gb|AY092964.1| Arabidopsis thaliana eukaryotic cap-binding protein (gb|AAC17220.1)
           (At5g18110) mRNA, complete cds
          Length = 1036

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 755 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 696

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 695 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 636

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 635 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 576

             
Query: 343 cg 344
           ||
Sbjct: 575 cg 574



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>gb|AF028809.1|AF028809 Arabidopsis thaliana novel cap-binding protein nCBP mRNA, complete
           cds
          Length = 1009

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 745 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 686

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 685 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 626

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 625 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 566

             
Query: 343 cg 344
           ||
Sbjct: 565 cg 564



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>emb|BX832048.1|CNS0A12P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH48ZG08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 989

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 713 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 654

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 653 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 594

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 593 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 534

             
Query: 343 cg 344
           ||
Sbjct: 533 cg 532



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>emb|BX831907.1|CNS0A178 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH38ZG08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 999

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 715 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 656

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 655 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 596

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 595 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 536

             
Query: 343 cg 344
           ||
Sbjct: 535 cg 534



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>emb|BX831776.1|CNS0A10R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH29ZC04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 955

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 716 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 657

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 656 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 597

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 596 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 537

             
Query: 343 cg 344
           ||
Sbjct: 536 cg 535



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>emb|BX833226.1|CNS0A0B0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL3ZC04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 962

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 722 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 663

                                                                       
Query: 223 tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctcttaatgtc 282
           || ||||| | ||| |  || |||| |||||| |||| ||| ||||||||||| ||   |
Sbjct: 662 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctctcaaaccc 603

                                                                       
Query: 283 atcacagcctggtggtctgatgcattccgattccagacactcaggatgtcttcattgaaa 342
           ||||| ||||| ||||| || ||||| |||||||| ||||| | |||||| || ||||||
Sbjct: 602 atcactgcctgatggtcagaagcattgcgattccatacactaatgatgtcctcgttgaaa 543

             
Query: 343 cg 344
           ||
Sbjct: 542 cg 541



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>dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7
          Length = 83948

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                         
Query: 163   cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
             ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 12615 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 12674

                                                                  
Query: 223   tactccatcagataggtgtgcggcagcttcaagtgcctcttaattgagtctct 275
             || ||||| | ||| |  || |||| |||||| |||| ||| |||||||||||
Sbjct: 12675 tattccatgacatatgcatgaggcaacttcaaatgccgcttgattgagtctct 12727



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>gb|AC156827.4| Medicago truncatula clone mth2-15c17, complete sequence
          Length = 110578

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 163   cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
             ||||||| ||| ||||||||||| || || |||||||| || || |||||||||||||||
Sbjct: 90770 cctctcaaccaagtgttcctgtaagatgaattgtctcgaagagaagcatcatgtggtttg 90711

                     
Query: 223   tactccat 230
             ||||||||
Sbjct: 90710 tactccat 90703



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>ref|NM_121815.2| Arabidopsis thaliana CSD3 (COPPER/ZINC SUPEROXIDE DISMUTASE 3);
           copper, zinc superoxide dismutase AT5G18100 (CSD3) mRNA,
           complete cds
          Length = 1011

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 163 cctctcagccatgtgttcctgtaggacgagttgtctcgcagcgaggcatcatgtggtttg 222
           ||||||||||||||||| |||||||| |||||||| || || || ||||| ||||| |||
Sbjct: 921 cctctcagccatgtgtttctgtaggaagagttgtcgcggagagaagcatcgtgtggcttg 980

                   
Query: 223 tactccat 230
           || |||||
Sbjct: 981 tattccat 988



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>gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 127462

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    ttaggcatttgaaattctgca 36
             |||||||||||||||||||||
Sbjct: 91810 ttaggcatttgaaattctgca 91830



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>ref|XM_467121.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 227  ccatcagataggtgtgcggcagct 250
            |||||||||||||||||| |||||
Sbjct: 1769 ccatcagataggtgtgcgtcagct 1746



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>gb|AC141885.3| Mus musculus BAC clone RP24-104I20 from chromosome 16, complete
             sequence
          Length = 167248

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    aggcatttgaaattctgcag 37
             ||||||||||||||||||||
Sbjct: 73055 aggcatttgaaattctgcag 73036



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>ref|XM_760989.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
           (TP01_0563) partial mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 361 ccacaaacatcatcactataatca 384
           ||||||||||||||||||| ||||
Sbjct: 871 ccacaaacatcatcactatcatca 848



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>emb|AL441927.10| Human DNA sequence from clone RP1-294P19 on chromosome 6, complete
             sequence
          Length = 67605

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   aatccacaaggattaagttc 121
             ||||||||||||||||||||
Sbjct: 63602 aatccacaaggattaagttc 63621



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>gb|AC182435.3| Mus musculus chromosome 8, clone wi1-1119F24, complete sequence
          Length = 37516

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   agggccatgactagccttga 147
             ||||||||||||||||||||
Sbjct: 16077 agggccatgactagccttga 16058



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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    cgcagcgaggcatcatgtgg 218
              ||||||||||||||||||||
Sbjct: 340231 cgcagcgaggcatcatgtgg 340250



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>gb|AC093852.3| Homo sapiens BAC clone RP11-500G9 from 4, complete sequence
          Length = 158901

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    gactagccttgacaacatgg 155
              ||||||||||||||||||||
Sbjct: 154662 gactagccttgacaacatgg 154681



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>gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, complete sequence
          Length = 142047

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 364   caaacatcatcactataatcaagt 387
             |||||||||||||||| |||||||
Sbjct: 65931 caaacatcatcactatgatcaagt 65954



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 227      ccatcagataggtgtgcggcagct 250
                |||||||||||||||||| |||||
Sbjct: 26523851 ccatcagataggtgtgcgtcagct 26523874



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>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_B06
          Length = 131956

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 227    ccatcagataggtgtgcggcagct 250
              |||||||||||||||||| |||||
Sbjct: 123767 ccatcagataggtgtgcgtcagct 123790



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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 227   ccatcagataggtgtgcggcagct 250
             |||||||||||||||||| |||||
Sbjct: 66232 ccatcagataggtgtgcgtcagct 66255



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>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence
          Length = 212270

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   acactcaggatgtcttcatt 338
             ||||||||||||||||||||
Sbjct: 71427 acactcaggatgtcttcatt 71408



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>gb|AC172623.3| Mus musculus chromosome 8, clone RP23-478A9, complete sequence
          Length = 182316

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  agggccatgactagccttga 147
            ||||||||||||||||||||
Sbjct: 9698 agggccatgactagccttga 9717



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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      gtcaatacttaggcatttga 27
              ||||||||||||||||||||
Sbjct: 511558 gtcaatacttaggcatttga 511577



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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 227    ccatcagataggtgtgcggcagct 250
              |||||||||||||||||| |||||
Sbjct: 229509 ccatcagataggtgtgcgtcagct 229532



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>gb|AC129214.5| Mus musculus BAC clone RP24-426N11 from 16, complete sequence
          Length = 191966

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   cacaaacatcatcactataa 381
             ||||||||||||||||||||
Sbjct: 97144 cacaaacatcatcactataa 97163



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>gb|AC132611.3| Mus musculus BAC clone RP23-375I21 from 17, complete sequence
          Length = 96871

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   cagcttcaagtgcctcttaa 265
             ||||||||||||||||||||
Sbjct: 43045 cagcttcaagtgcctcttaa 43064



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>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177,
             complete sequence
          Length = 133589

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   cttcattgaaacgacaactt 351
             ||||||||||||||||||||
Sbjct: 53053 cttcattgaaacgacaactt 53072


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,312,458
Number of Sequences: 3902068
Number of extensions: 3312458
Number of successful extensions: 59075
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58982
Number of HSP's gapped (non-prelim): 93
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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