ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet25d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein ... 258 1e-65
2gb|AF479033.1| Triticum aestivum 40S ribosomal protein mRNA, par... 180 2e-42
3ref|XM_463024.1| Oryza sativa (japonica cultivar-group), OSJNBa0... 82 1e-12
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 1e-12
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
6gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome... 82 1e-12
7dbj|AK099146.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
8dbj|AK061051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
9gb|AY107461.1| Zea mays PCO108959 mRNA sequence 68 2e-08
10ref|NM_122944.2| Arabidopsis thaliana structural constituent of ... 46 0.071
11gb|AY098949.1| Arabidopsis thaliana AT5g35530/MOK9_14 mRNA, comp... 46 0.071
12gb|AY058057.1| Arabidopsis thaliana AT5g35530/MOK9_14 mRNA, comp... 46 0.071
13gb|AY084320.1| Arabidopsis thaliana clone 10394 mRNA, complete s... 46 0.071
14dbj|AB015477.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.071
15emb|AL844525.1| Human DNA sequence from clone RP11-158M19 on chr... 42 1.1
16emb|AL356295.9| Human DNA sequence from clone RP11-768P11 on chr... 42 1.1
17emb|BX831845.1|CNS0A14G Arabidopsis thaliana Full-length cDNA Co... 42 1.1
18gb|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355... 42 1.1
19ref|XM_593742.2| PREDICTED: Bos taurus similar to serologically ... 40 4.4
20gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, com... 40 4.4
21gb|AC124690.4| Mus musculus BAC clone RP24-157B13 from chromosom... 40 4.4
22gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
23emb|BX842627.1| Neurospora crassa DNA linkage group I BAC clone ... 40 4.4
24gb|AC116926.1| Genomic sequence for Oryza sativa (japonica culti... 40 4.4
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
26emb|BX255881.9| Zebrafish DNA sequence from clone CH211-268E23 i... 40 4.4
27gb|AC115945.9| Mus musculus chromosome 3, clone RP24-555P13, com... 40 4.4
28gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
29emb|AL683888.10| Mouse DNA sequence from clone RP23-462C12 on ch... 40 4.4 
>gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein S3 mRNA, complete
           cds
          Length = 1004

 Score =  258 bits (130), Expect = 1e-65
 Identities = 196/217 (90%), Gaps = 2/217 (0%)
 Strand = Plus / Minus

                                                                       
Query: 116 aggtaaccaaacgttgcataccccac--ttgtcacaaggataggaaacaagctaggacca 173
           |||||||||| ||||||||| ||| |  || ||||| |||||| |||| ||||| |||||
Sbjct: 873 aggtaaccaagcgttgcatagccctcgcttatcacagggatagaaaactagctacgacca 814

                                                                       
Query: 174 aaatgatgtgccgtttcatggtctgcttgcactactgggagtttaaacctcaatcaaagc 233
           |||||||||| ||||||||||||||||||| ||||||||| |||| ||||||| ||||||
Sbjct: 813 aaatgatgtgacgtttcatggtctgcttgctctactgggactttagacctcaaccaaagc 754

                                                                       
Query: 234 cggggggcgcagctcgtcctcctccttcggggggtggaaggtgacaaggtcaggcagggg 293
           ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||
Sbjct: 753 cggggggcgcagctcgttctcctccttcggggggtggatggtgacgaggtcaggcagcgg 694

                                                
Query: 294 ggtggtagggccaagtttgcccttggggtcccagtca 330
            |||||||||||||| |||||||||||||||||||||
Sbjct: 693 agtggtagggccaagcttgcccttggggtcccagtca 657



 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 47  aaacttagtttaaacgaaattaa 69
           |||||||||||||||||||||||
Sbjct: 941 aaacttagtttaaacgaaattaa 919
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>gb|AF479033.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds
          Length = 240

 Score =  180 bits (91), Expect = 2e-42
 Identities = 106/111 (95%)
 Strand = Plus / Minus

                                                                       
Query: 220 acctcaatcaaagccggggggcgcagctcgtcctcctccttcggggggtggaaggtgaca 279
           ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 236 acctcaaccaaagccggtgggcgcagctcgtcctcctccttcggggggtggatggtgaca 177

                                                              
Query: 280 aggtcaggcaggggggtggtagggccaagtttgcccttggggtcccagtca 330
           ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 176 aggtcaggcagcggggtggtagggccaagcttgcccttggggtcccagtca 126
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>ref|XM_463024.1| Oryza sativa (japonica cultivar-group), OSJNBa0008D12.4 mRNA
          Length = 1112

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 233 ccggggggcgcagctcgtcctcctccttcggggggtggaaggtgacaaggtcaggcaggg 292
           |||| ||||||||||| ||||||||||| || |  |||| ||| ||||| || ||||| |
Sbjct: 780 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 721

                                                
Query: 293 gggtggtagggccaagtttgcccttggggtcccagtc 329
           ||||||| |||||||  ||||||||||||||||||||
Sbjct: 720 gggtggtcgggccaaccttgcccttggggtcccagtc 684
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 233      ccggggggcgcagctcgtcctcctccttcggggggtggaaggtgacaaggtcaggcaggg 292
                |||| ||||||||||| ||||||||||| || |  |||| ||| ||||| || ||||| |
Sbjct: 20905760 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 20905819

                                                     
Query: 293      gggtggtagggccaagtttgcccttggggtcccagtc 329
                ||||||| |||||||  ||||||||||||||||||||
Sbjct: 20905820 gggtggtcgggccaaccttgcccttggggtcccagtc 20905856
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 233      ccggggggcgcagctcgtcctcctccttcggggggtggaaggtgacaaggtcaggcaggg 292
                |||| ||||||||||| ||||||||||| || |  |||| ||| ||||| || ||||| |
Sbjct: 20898789 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 20898848

                                                     
Query: 293      gggtggtagggccaagtttgcccttggggtcccagtc 329
                ||||||| |||||||  ||||||||||||||||||||
Sbjct: 20898849 gggtggtcgggccaaccttgcccttggggtcccagtc 20898885
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>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12
             map MAP_LOC, complete sequence
          Length = 167323

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                         
Query: 233   ccggggggcgcagctcgtcctcctccttcggggggtggaaggtgacaaggtcaggcaggg 292
             |||| ||||||||||| ||||||||||| || |  |||| ||| ||||| || ||||| |
Sbjct: 17163 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 17104

                                                  
Query: 293   gggtggtagggccaagtttgcccttggggtcccagtc 329
             ||||||| |||||||  ||||||||||||||||||||
Sbjct: 17103 gggtggtcgggccaaccttgcccttggggtcccagtc 17067
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>dbj|AK099146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061B16, full
           insert sequence
          Length = 1054

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 233 ccggggggcgcagctcgtcctcctccttcggggggtggaaggtgacaaggtcaggcaggg 292
           |||| ||||||||||| ||||||||||| || |  |||| ||| ||||| || ||||| |
Sbjct: 790 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 731

                                                
Query: 293 gggtggtagggccaagtttgcccttggggtcccagtc 329
           ||||||| |||||||  ||||||||||||||||||||
Sbjct: 730 gggtggtcgggccaaccttgcccttggggtcccagtc 694
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>dbj|AK061051.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G04, full
           insert sequence
          Length = 1084

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 233 ccggggggcgcagctcgtcctcctccttcggggggtggaaggtgacaaggtcaggcaggg 292
           |||| ||||||||||| ||||||||||| || |  |||| ||| ||||| || ||||| |
Sbjct: 792 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 733

                                                
Query: 293 gggtggtagggccaagtttgcccttggggtcccagtc 329
           ||||||| |||||||  ||||||||||||||||||||
Sbjct: 732 gggtggtcgggccaaccttgcccttggggtcccagtc 696
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>gb|AY107461.1| Zea mays PCO108959 mRNA sequence
          Length = 794

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 233 ccggggggcgcagctcgtcctcctccttcggggggtggaaggtgacaaggtcaggcaggg 292
           |||| |||||| |||||||||| |||||||||| ||||| ||| || ||||| || || |
Sbjct: 478 ccggagggcgcggctcgtcctcgtccttcggggtgtggatggtcaccaggtccggaagag 419

                                                 
Query: 293 gggtggtagggccaagtttgcccttggggtcccagtca 330
           | ||| | |||||||  |||||||| ||||||||||||
Sbjct: 418 gagtgatcgggccaaccttgcccttcgggtcccagtca 381
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>ref|NM_122944.2| Arabidopsis thaliana structural constituent of ribosome AT5G35530
           mRNA, complete cds
          Length = 1028

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 308 gtttgcccttggggtcccagtca 330
           |||||||||||||||||||||||
Sbjct: 657 gtttgcccttggggtcccagtca 635
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>gb|AY098949.1| Arabidopsis thaliana AT5g35530/MOK9_14 mRNA, complete cds
          Length = 747

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 308 gtttgcccttggggtcccagtca 330
           |||||||||||||||||||||||
Sbjct: 592 gtttgcccttggggtcccagtca 570
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>gb|AY058057.1| Arabidopsis thaliana AT5g35530/MOK9_14 mRNA, complete cds
          Length = 955

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 308 gtttgcccttggggtcccagtca 330
           |||||||||||||||||||||||
Sbjct: 656 gtttgcccttggggtcccagtca 634
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>gb|AY084320.1| Arabidopsis thaliana clone 10394 mRNA, complete sequence
          Length = 985

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 308 gtttgcccttggggtcccagtca 330
           |||||||||||||||||||||||
Sbjct: 657 gtttgcccttggggtcccagtca 635
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>dbj|AB015477.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK9
          Length = 87459

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 308   gtttgcccttggggtcccagtca 330
             |||||||||||||||||||||||
Sbjct: 49326 gtttgcccttggggtcccagtca 49348
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>emb|AL844525.1| Human DNA sequence from clone RP11-158M19 on chromosome X, complete
              sequence
          Length = 114428

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 66     ttaaaagggcagcataacataaaag 90
              ||||||||| |||||||||||||||
Sbjct: 100414 ttaaaagggaagcataacataaaag 100438
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>emb|AL356295.9| Human DNA sequence from clone RP11-768P11 on chromosome 13, complete
              sequence
          Length = 134347

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 66     ttaaaagggcagcataacataaaag 90
              ||||||||| |||||||||||||||
Sbjct: 117813 ttaaaagggaagcataacataaaag 117837
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>emb|BX831845.1|CNS0A14G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH33ZB11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 972

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 308 gtttgcccttggggtcccagt 328
           |||||||||||||||||||||
Sbjct: 642 gtttgcccttggggtcccagt 622
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>gb|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355_O_1, complete sequence
          Length = 190815

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 14   ctttggcatacataaaaagta 34
            |||||||||||||||||||||
Sbjct: 8723 ctttggcatacataaaaagta 8743
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>ref|XM_593742.2| PREDICTED: Bos taurus similar to serologically defined colon cancer
            antigen 33 like (LOC515677), partial mRNA
          Length = 3176

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  cagctcgtcctcctccttcggggg 266
            ||||| ||||||||||||||||||
Sbjct: 1934 cagcttgtcctcctccttcggggg 1911
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>gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, complete sequence
          Length = 198759

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 262   ggggggtggaaggtgacaaggtcaggca 289
             ||||||||||| | ||||||||||||||
Sbjct: 81507 ggggggtggaaagggacaaggtcaggca 81534
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>gb|AC124690.4| Mus musculus BAC clone RP24-157B13 from chromosome 1, complete sequence
          Length = 178992

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    aaattaaaagggcagcataa 82
             ||||||||||||||||||||
Sbjct: 90784 aaattaaaagggcagcataa 90765
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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
             complete sequence
          Length = 131922

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   aggaaacaagctaggaccaa 174
             ||||||||||||||||||||
Sbjct: 85738 aggaaacaagctaggaccaa 85719
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>emb|BX842627.1| Neurospora crassa DNA linkage group I BAC clone B8J22
          Length = 75335

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  ataggaaacaagctaggacc 172
            ||||||||||||||||||||
Sbjct: 7696 ataggaaacaagctaggacc 7677
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>gb|AC116926.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1341F06, from chromosome 10, complete
             sequence
          Length = 102520

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aggaaacaagctaggaccaa 174
             ||||||||||||||||||||
Sbjct: 88705 aggaaacaagctaggaccaa 88724
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 155      aggaaacaagctaggaccaa 174
                ||||||||||||||||||||
Sbjct: 11277750 aggaaacaagctaggaccaa 11277731
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>emb|BX255881.9| Zebrafish DNA sequence from clone CH211-268E23 in linkage group 20,
              complete sequence
          Length = 163427

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     caccaaacttagtttaaacg 62
              ||||||||||||||||||||
Sbjct: 112454 caccaaacttagtttaaacg 112473
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>gb|AC115945.9| Mus musculus chromosome 3, clone RP24-555P13, complete sequence
          Length = 172240

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 13     tctttggcatacataaaaagtatc 36
              ||||||||||||| ||||||||||
Sbjct: 134467 tctttggcatacaaaaaaagtatc 134444
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 155      aggaaacaagctaggaccaa 174
                ||||||||||||||||||||
Sbjct: 11284190 aggaaacaagctaggaccaa 11284171
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>emb|AL683888.10| Mouse DNA sequence from clone RP23-462C12 on chromosome X, complete
              sequence
          Length = 200089

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     gttctttggcatacataaaa 30
              ||||||||||||||||||||
Sbjct: 164769 gttctttggcatacataaaa 164788


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,015,237
Number of Sequences: 3902068
Number of extensions: 3015237
Number of successful extensions: 58726
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58608
Number of HSP's gapped (non-prelim): 118
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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