ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet24f04 |
|---|---|
| Clone Library Name | barley_pub |
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = -1 Query: 276 GGFYEEGGDRCKLDIVTGCMDRTSHMFDPLATIDDGSCPLDF 151 G FY +G + L + GC D + FDP A DDG+C +F Sbjct: 433 GTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = -1 Query: 276 GGFYEEGGDRCKLDIVTGCMDRTSHMFDPLATIDDGSCPLDF 151 G FY +G + L + GC D+ + +DP A DDGSC F Sbjct: 423 GSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 36.2 bits (82), Expect = 0.021 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -1 Query: 282 DIGGFYEEGGDRCKLDIVTGCMDRTSHMFDPLATIDDGSC 163 D G F+ + + L + GC D + +DP A DDGSC Sbjct: 429 DRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSC 468
>DNAJ_STRA5 (Q8E298) Chaperone protein dnaJ| Length = 379 Score = 33.5 bits (75), Expect = 0.14 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +3 Query: 102 SCCSCHLGAGPVTPPNQSPAGRSRRRWWPVGQTCARSGPCTRSRCPACTG 251 +C CH G+G + Q+P G RR+ C SG + +CP C G Sbjct: 164 TCQKCH-GSGVINVDTQTPLGTMRRQ--VTCDVCQGSGQEIKEKCPTCHG 210
>DNAJ_STRA3 (Q8E7Q7) Chaperone protein dnaJ| Length = 379 Score = 33.5 bits (75), Expect = 0.14 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +3 Query: 102 SCCSCHLGAGPVTPPNQSPAGRSRRRWWPVGQTCARSGPCTRSRCPACTG 251 +C CH G+G + Q+P G RR+ C SG + +CP C G Sbjct: 164 TCQKCH-GSGVINVDTQTPLGTMRRQ--VTCDVCQGSGQEIKEKCPTCHG 210
>DNAJ_STRMU (Q8DWH2) Chaperone protein dnaJ| Length = 377 Score = 31.2 bits (69), Expect = 0.69 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +3 Query: 102 SCCSCHLGAGPVTPPNQSPAGRSRRRWWPVGQTCARSGPCTRSRCPACTG 251 +C CH G+G + Q+P G RR+ C +G + CP C G Sbjct: 162 TCSKCH-GSGVINMDTQTPLGMMRRQ--VTCDVCHGTGQEIKEPCPTCHG 208
>GP155_HUMAN (Q7Z3F1) Protein GPR155 (G-protein coupled receptor PGR22)| Length = 870 Score = 31.2 bits (69), Expect = 0.69 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = +3 Query: 42 EDTSSNRGSPSLFYSKYILRSCCSCHLGAGPVTPPNQSPAGRSRRRWWPVGQTCARSGPC 221 E++ + P LF S SCCSC +G G + P+ P + PV + ++ C Sbjct: 571 EESPAPVNEPELFTSSIPETSCCSCSMGNGELHCPSIEPIANTSTS-EPVIPSFEKNNHC 629 Query: 222 TRSRC 236 SRC Sbjct: 630 V-SRC 633
>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL| receptor) (Scavenger receptor class F member 1) Length = 830 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = +3 Query: 108 CSCHLGAGPVTPPNQSPAGRSRRR--WWPVGQTCARSGPCTRSRCPACTG 251 C+CH P + +GR R WW G C + C R RC A +G Sbjct: 194 CNCH------GSPCEQDSGRCACRPGWW--GPECQQQCECVRGRCSAASG 235
>YJT8_YEAST (P39535) Hypothetical 97.7 kDa membrane protein in PRP21-UBP12| intergenic region Length = 881 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = -1 Query: 252 DRCKLDIVTGCMDRTSHMFDPLATIDDGSCPLDFDSEE*PDQRQDDMSS 106 D K+ ++ +D + +P+A+ +D PLD D +E D+ DD S+ Sbjct: 171 DLKKIGVIEYDIDDDTLFNEPIASTNDEVPPLDLDDDEDDDEFYDDQSN 219
>GP155_PONPY (Q5R9A7) Protein GPR155| Length = 872 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +3 Query: 69 PSLFYSKYILRSCCSCHLGAGPVTPPNQSPAGRSRRRWWPVGQTCARSGPCTRSRC 236 P LF S SCCSC +G G + P+ P + PV + ++ C SRC Sbjct: 582 PELFTSSIPETSCCSCSMGNGELHCPSIEPIANTSTS-EPVIPSFEKNNHCV-SRC 635
>CXI_CONCE (P69494) I-superfamily conotoxin precursor| Length = 67 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 174 RRWWPVGQTCARSGPCTRSRCPACTGLLPP 263 RR +P G C R PC R RC C+G P Sbjct: 27 RRCFPPGVYCTRHLPCCRGRC--CSGWCRP 54
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = -1 Query: 276 GGFYEEGGDRCK----LDIVTGCMDRTSHMFDPLATIDDGSCPLDF 151 G FY GG + + + GC D + +DP A DDGSC F Sbjct: 433 GTFY--GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>BMP2K_MOUSE (Q91Z96) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1138 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = -1 Query: 171 GSCPLDFDSEE*PDQRQDDMSSSFAICTYYKTKRG 67 G PL DSE D+ +DD SS + C KTKRG Sbjct: 772 GHRPLLMDSE---DEEEDDKHSSDSECEQAKTKRG 803
>TNR8_HUMAN (P28908) Tumor necrosis factor receptor superfamily member 8| precursor (CD30L receptor) (Lymphocyte activation antigen CD30) (KI-1 antigen) Length = 595 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 42 EDTSSNRGSPSLFYSKYILRSCCSCHLGAGPVTPPNQSP 158 EDT G+PS +Y K + R C C +G P Q P Sbjct: 26 EDTC--HGNPSHYYDKAVRRCCYRCPMGLFPTQQCPQRP 62
>DNAJ_METSS (Q9ZFC5) Chaperone protein dnaJ| Length = 371 Score = 28.9 bits (63), Expect = 3.4 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%) Frame = +3 Query: 93 ILRSCCSCH-LGAGPVTPP-NQSPAG-----RSRRRWWPVGQTCAR---SGPCTRSRCPA 242 ++ C +CH GA P T P + G R ++ ++ V QTC + SG + CP+ Sbjct: 141 VMSECETCHGSGARPGTQPVTCTTCGGHGQVRMQQGFFSVQQTCPKCHGSGKMVKEPCPS 200 Query: 243 CTG 251 C G Sbjct: 201 CQG 203
>Y14K_PMV (P20955) Hypothetical 14.1 kDa protein in ORF1 coding strand| Length = 122 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Frame = +3 Query: 144 PNQSPAGRS--RRRWWPVGQTCARSGPCTRSRCP 239 P Q P G+S +R W SGPCT RCP Sbjct: 64 PTQRPIGKSTLKRGQWEKCCLNHTSGPCTCQRCP 97
>AROB_XANCP (Q8P6X3) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 370 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +1 Query: 166 GAVVDGGQWVKHVRGPVHAPGHDVQLAPVSSLLVEAADIAARDD 297 G + DG + +HVRG D Q+AP + V AA + AR D Sbjct: 25 GLLADGARLARHVRGRHVLLLSDTQVAPHYAAGVRAALLQARPD 68
>AROB_XANC8 (Q4UX86) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 370 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +1 Query: 166 GAVVDGGQWVKHVRGPVHAPGHDVQLAPVSSLLVEAADIAARDD 297 G + DG + +HVRG D Q+AP + V AA + AR D Sbjct: 25 GLLADGARLARHVRGRHVLLLSDTQVAPHYAAGVRAALLQARPD 68
>DNAJ_CHLTE (Q8KCD8) Chaperone protein dnaJ| Length = 403 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +3 Query: 105 CCSCHLGAGPVTPPNQSPAGRSRRRWWPVGQTCARSGPCTRSRCPACTG 251 C +CH G+G V ++ G+ V TC G + RCP+C G Sbjct: 188 CPTCH-GSGEVRQATKTMFGQFMNI--SVCPTCGGEGRVVKDRCPSCYG 233
>FTF1B_DROME (Q05192) Nuclear hormone receptor FTZ-F1 beta (dHR39)| Length = 808 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 5/20 (25%) Frame = +3 Query: 201 CARSGPC-----TRSRCPAC 245 C R GPC TR +CPAC Sbjct: 412 CVRGGPCQVSISTRKKCPAC 431
>TREF1_HUMAN (Q96PN7) Transcriptional-regulating factor 1| (Transcriptional-regulating protein 132) (Zinc finger transcription factor TReP-132) (Zinc finger protein rapa) Length = 1200 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = +1 Query: 145 RIKVQRAGAVVDGGQWVKHVRGPVHAPGHDVQLAPVS--SLLVEAADIAARDDDV 303 R K Q+A + ++ GPV APG L P+ SL+ D+ DDDV Sbjct: 1116 RQKAQKAAFAAEMAATIERTTGPVGAPG----LLPLDQLSLIKPIKDVDILDDDV 1166
>DNAJ1_SYNY3 (Q55505) Chaperone protein dnaJ 1| Length = 377 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +3 Query: 96 LRSCCSCHLGAGPVTPPNQSPAGRSRRRWWPVGQTCARSGPCTRSRCPACTGL 254 +++C +C+ GAG V ++P G + TC SG +C AC G+ Sbjct: 163 VKTCGTCN-GAGQVRRATRTPFGSFAQV--SACPTCNGSGEVIEQKCEACNGV 212
>FRZCD_MYXXA (P43500) Frizzy aggregation protein frzCD| Length = 417 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 144 PNQSPAGRSRRRWWPVGQTCARSGPCTRSRCPACTGLL 257 PN+ PAG++R R P + A + T S A T L Sbjct: 6 PNEKPAGKARARKAPASKAGATNAASTSSSTKAITDTL 43
>ZN496_HUMAN (Q96IT1) Zinc finger protein 496| Length = 587 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -1 Query: 204 HMFDPLATIDDGSCPLDFDSEE*PDQRQDDMSSS 103 H DP+ IDDG PLD + E+ P + D++ + Sbjct: 133 HCEDPVV-IDDGDSPLDQEQEQLPVEPHSDLAKN 165
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Frame = +3 Query: 126 AGPVTPPNQSPAGRSRRRWWP-VGQTCARSGPCTRSRCPACTG 251 AGP PP R R WP G+ R+G C P+C G Sbjct: 132 AGPAPPPASRDCRCRRPRRWPRAGRRGRRAGACK----PSCAG 170
>TB182_MOUSE (P58871) 182 kDa tankyrase 1-binding protein (Fragment)| Length = 909 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/63 (26%), Positives = 27/63 (42%) Frame = -2 Query: 257 EETGASWTS*PGAWTGPRTCLTHWPPSTTAPARWTLIRRSDRTSAKMT*AAASQYVLTIK 78 E+TG P P +CLT PPS + ++ S A +AAS + ++ Sbjct: 603 EDTGMDTGEAPSLGASPSSCLTRSPPSGSQSLLEGIMTASSSKGAPQRESAASGSRVLLE 662 Query: 77 QRG 69 + G Sbjct: 663 EEG 665
>SRYA_DROME (P07666) Serendipity locus protein alpha| Length = 530 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +1 Query: 76 CFIVSTYCEAAAHVILALVRSLLRIKVQRAGAVVDGGQWVKHVRGPVHAPG 228 C +++ Y + I +S L++ VQR G VVD H R PV+ G Sbjct: 357 CSLINNYLDMLGERIHVQDKSHLKLIVQRGGVVVD------HFRLPVNYSG 401
>DAB2_HUMAN (P98082) Disabled homolog 2 (Differentially expressed protein 2)| (DOC-2) Length = 770 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -1 Query: 195 DPLATIDDGSCPLDFDSEE*PDQRQDDMSSS 103 DP T D S P FDS + PDQ++++ SSS Sbjct: 298 DPF-TQPDQSTPSSFDSLKSPDQKKENSSSS 327
>CXI_CONST (P69499) I-superfamily conotoxin precursor| Length = 68 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +3 Query: 174 RRWWPVGQTCARSGPCTRSRCPACTGLLPP 263 RR P + C R PC R C C+GL P Sbjct: 27 RRCVPPSRYCTRHRPCCRGTC--CSGLCRP 54
>UL47_BHV1C (P36338) 80.7 kDa alpha trans-inducing protein (VP8 tegument| protein) (VP7 protein) (107 kDa protein) Length = 739 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +3 Query: 60 RGSPSLFYSKYILRSCCSCHLGAGPVTPPNQSPAGRSRRRWWPVG 194 R PS F+++ L + C TPPN R RR W G Sbjct: 265 RVRPSAFFAQMSLDALCR--------TPPNDQRVARERRAWEMAG 301 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,986,302 Number of Sequences: 219361 Number of extensions: 1019158 Number of successful extensions: 3083 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2995 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3077 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
