ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet24e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRFR2_MOUSE (Q60748) Corticotropin-releasing factor receptor 2 p... 29 3.3
2CRFR2_RAT (P47866) Corticotropin-releasing factor receptor 2 pre... 29 3.3
3CD209_PANTR (Q8HXZ7) CD209 antigen (Dendritic cell-specific ICAM... 28 4.3
4ACMA_LACLC (Q48603) Probable N-acetylmuramidase precursor (EC 3.... 28 7.3
5SELI_MOUSE (Q80TA1) Selenoprotein I 27 9.5
6ALA2_ARATH (P98205) Putative phospholipid-transporting ATPase 2 ... 27 9.5

>CRFR2_MOUSE (Q60748) Corticotropin-releasing factor receptor 2 precursor (CRF-R|
           2) (CRF2) (Corticotropin-releasing hormone receptor 2)
           (CRH-R 2) (CRF-RB) (CRH-R2)
          Length = 431

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 112 VGYCAHRVEITCALVVFLVSRSVRC 38
           +G+C   V +  A ++FLV RS+RC
Sbjct: 142 LGHCVSVVALVAAFLLFLVLRSIRC 166



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>CRFR2_RAT (P47866) Corticotropin-releasing factor receptor 2 precursor (CRF-R|
           2) (CRF2) (Corticotropin-releasing hormone receptor 2)
           (CRH-R 2)
          Length = 411

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 112 VGYCAHRVEITCALVVFLVSRSVRC 38
           +G+C   V +  A ++FLV RS+RC
Sbjct: 122 LGHCVSVVALVAAFLLFLVLRSIRC 146



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>CD209_PANTR (Q8HXZ7) CD209 antigen (Dendritic cell-specific ICAM-3-grabbing|
           nonintegrin 1) (DC-SIGN1)
          Length = 427

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 120 YINLTRVTVSVGEVSTAE*GDIINQKIKQLKIRKYCICGRIQYDLPFF 263
           Y  LTR+  +VGE+        I Q++ QLK     +C R  ++  FF
Sbjct: 239 YQELTRLKAAVGELPEKSKQQEIYQELTQLKAAVERLCRRCPWEWTFF 286



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>ACMA_LACLC (Q48603) Probable N-acetylmuramidase precursor (EC 3.2.1.17)|
           (Peptidoglycan hydrolase) (Autolysin) (Lysosyme)
          Length = 437

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 14  SIISAQ*CTANRPGHQENDKSTSNLNSMRTITDHSLHKLNTGNSFSWG 157
           ++I +Q   A+ P       +T+N NS  + ++ S+HK+  G++  WG
Sbjct: 359 NLIVSQSAAASNPSTGSGSTATNNSNSTSSNSNASIHKVVKGDTL-WG 405



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>SELI_MOUSE (Q80TA1) Selenoprotein I|
          Length = 398

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 25/84 (29%), Positives = 36/84 (42%)
 Frame = -2

Query: 280 KKLSWKKKGRSYCILPHIQYFLIFNCLIFWLIISPYSAVETSPTETVTRVKFM**MVGYC 101
           K  + K K     ++P     L+F     W++ SP   +E  P     R+ +   MVG  
Sbjct: 247 KSNTLKHKSVYEAMVPFFSPCLLFTLCTVWILWSPSDILEIHP-----RIFYF--MVGTA 299

Query: 100 AHRVEITCALVVFLVSRSVRCTLL 29
                ITC L+V  +S S RC  L
Sbjct: 300 F--ANITCQLIVCQMS-STRCPTL 320



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>ALA2_ARATH (P98205) Putative phospholipid-transporting ATPase 2 (EC 3.6.3.1)|
           (Aminophospholipid flippase 2)
          Length = 1107

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 226 QYFLIFNCLIFWLIISPYSAVET 158
           QYFL+  CL  W +I+P +   T
Sbjct: 47  QYFLLIACLQLWSLITPVNPAST 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,258,282
Number of Sequences: 219361
Number of extensions: 832913
Number of successful extensions: 1956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1956
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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