| Clone Name | rbaet24d12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_481110.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1503 Score = 61.9 bits (31), Expect = 1e-06 Identities = 109/135 (80%) Strand = Plus / Minus Query: 234 gcccgtcaaccagctccacatcgaagttccacaccattgccgcgacaatagtattcatct 293 ||||||| |||| |||||| |||||||||||||||| || || | || || ||||||| Sbjct: 1445 gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 1386 Query: 294 gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 353 |||| | | |||| |||||| |||| |||||||| |||||| |||| ||||| || | Sbjct: 1385 gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 1326 Query: 354 tgtgagacggcacgt 368 |||| |||||||||| Sbjct: 1325 tgtgcgacggcacgt 1311
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 61.9 bits (31), Expect = 1e-06 Identities = 109/135 (80%) Strand = Plus / Plus Query: 234 gcccgtcaaccagctccacatcgaagttccacaccattgccgcgacaatagtattcatct 293 ||||||| |||| |||||| |||||||||||||||| || || | || || ||||||| Sbjct: 9952688 gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 9952747 Query: 294 gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 353 |||| | | |||| |||||| |||| |||||||| |||||| |||| ||||| || | Sbjct: 9952748 gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 9952807 Query: 354 tgtgagacggcacgt 368 |||| |||||||||| Sbjct: 9952808 tgtgcgacggcacgt 9952822 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 234 gcccgtcaaccagctccacatcgaagttccacacca 269 ||||||| |||| |||||| |||||||||||||||| Sbjct: 9950879 gcccgtccaccacctccacgtcgaagttccacacca 9950914 Score = 46.1 bits (23), Expect = 0.082 Identities = 107/135 (79%) Strand = Plus / Minus Query: 242 accagctccacatcgaagttccacaccattgccgcgacaatagtattcatctgcataaat 301 |||| |||||| |||||||||||||||| || ||| | || || |||||| |||| | Sbjct: 10046597 accatctccacgtcgaagttccacaccaccgcggcggcgatggtcttcatcagcatcacg 10046538 Query: 302 gagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatttgtgagac 361 | |||| |||||| |||| ||||||| |||||| |||| |||| || ||||| ||| Sbjct: 10046537 gcgatgctcttgccggggcacatcctcgccccggagttgaacgccaggaacttgtgcgac 10046478 Query: 362 ggcacgtaccgcagc 376 ||||||| ||||||| Sbjct: 10046477 ggcacgtgccgcagc 10046463 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 164 cgcttcttcagcttcaccatgagcccatttttcatgtgcag 204 |||||||||| ||||||||||| ||| || ||||| ||||| Sbjct: 9916738 cgcttcttcaccttcaccatgaccccgttcttcatctgcag 9916698
>dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0005C03 Length = 166423 Score = 61.9 bits (31), Expect = 1e-06 Identities = 109/135 (80%) Strand = Plus / Plus Query: 234 gcccgtcaaccagctccacatcgaagttccacaccattgccgcgacaatagtattcatct 293 ||||||| |||| |||||| |||||||||||||||| || || | || || ||||||| Sbjct: 99935 gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 99994 Query: 294 gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 353 |||| | | |||| |||||| |||| |||||||| |||||| |||| ||||| || | Sbjct: 99995 gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 100054 Query: 354 tgtgagacggcacgt 368 |||| |||||||||| Sbjct: 100055 tgtgcgacggcacgt 100069 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 234 gcccgtcaaccagctccacatcgaagttccacacca 269 ||||||| |||| |||||| |||||||||||||||| Sbjct: 98126 gcccgtccaccacctccacgtcgaagttccacacca 98161 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 164 cgcttcttcagcttcaccatgagcccatttttcatgtgcag 204 |||||||||| ||||||||||| ||| || ||||| ||||| Sbjct: 63985 cgcttcttcaccttcaccatgaccccgttcttcatctgcag 63945
>ref|XM_481109.1| Oryza sativa (japonica cultivar-group), mRNA Length = 195 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Minus Query: 234 gcccgtcaaccagctccacatcgaagttccacacca 269 ||||||| |||| |||||| |||||||||||||||| Sbjct: 137 gcccgtccaccacctccacgtcgaagttccacacca 102
>dbj|AP006158.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1127C04 Length = 121441 Score = 46.1 bits (23), Expect = 0.082 Identities = 107/135 (79%) Strand = Plus / Minus Query: 242 accagctccacatcgaagttccacaccattgccgcgacaatagtattcatctgcataaat 301 |||| |||||| |||||||||||||||| || ||| | || || |||||| |||| | Sbjct: 86499 accatctccacgtcgaagttccacaccaccgcggcggcgatggtcttcatcagcatcacg 86440 Query: 302 gagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatttgtgagac 361 | |||| |||||| |||| ||||||| |||||| |||| |||| || ||||| ||| Sbjct: 86439 gcgatgctcttgccggggcacatcctcgccccggagttgaacgccaggaacttgtgcgac 86380 Query: 362 ggcacgtaccgcagc 376 ||||||| ||||||| Sbjct: 86379 ggcacgtgccgcagc 86365
>dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0023I13 Length = 165911 Score = 46.1 bits (23), Expect = 0.082 Identities = 107/135 (79%) Strand = Plus / Minus Query: 242 accagctccacatcgaagttccacaccattgccgcgacaatagtattcatctgcataaat 301 |||| |||||| |||||||||||||||| || ||| | || || |||||| |||| | Sbjct: 5943 accatctccacgtcgaagttccacaccaccgcggcggcgatggtcttcatcagcatcacg 5884 Query: 302 gagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatttgtgagac 361 | |||| |||||| |||| ||||||| |||||| |||| |||| || ||||| ||| Sbjct: 5883 gcgatgctcttgccggggcacatcctcgccccggagttgaacgccaggaacttgtgcgac 5824 Query: 362 ggcacgtaccgcagc 376 ||||||| ||||||| Sbjct: 5823 ggcacgtgccgcagc 5809
>ref|XM_481105.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1694 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 164 cgcttcttcagcttcaccatgagcccatttttcatgtgcag 204 |||||||||| ||||||||||| ||| || ||||| ||||| Sbjct: 1557 cgcttcttcaccttcaccatgaccccgttcttcatctgcag 1517
>ref|XM_507182.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0005C03.18 mRNA Length = 1697 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 164 cgcttcttcagcttcaccatgagcccatttttcatgtgcag 204 |||||||||| ||||||||||| ||| || ||||| ||||| Sbjct: 1560 cgcttcttcaccttcaccatgaccccgttcttcatctgcag 1520
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 308 tccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatttgtgagacggcacg 367 |||||||| ||||| ||||||| |||||| |||| || | || |||| ||||||||| Sbjct: 2206603 tccttgccgaggcatgtcctcggcccggagttgaacgcgacgaacttgttcgacggcacg 2206544 Query: 368 taccgcagc 376 ||||||||| Sbjct: 2206543 taccgcagc 2206535
>gb|AC117263.4| Mus musculus BAC clone RP24-547F18 from chromosome 19, complete sequence Length = 201607 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 118 cacacaagatacaaataagaaaagg 142 |||| |||||||||||||||||||| Sbjct: 198973 cacagaagatacaaataagaaaagg 198997
>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030C11, complete sequence Length = 156647 Score = 42.1 bits (21), Expect = 1.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 308 tccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatttgtgagacggcacg 367 |||||||| ||||| ||||||| |||||| |||| || | || |||| ||||||||| Sbjct: 96897 tccttgccgaggcatgtcctcggcccggagttgaacgcgacgaacttgttcgacggcacg 96838 Query: 368 taccgcagc 376 ||||||||| Sbjct: 96837 taccgcagc 96829
>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081A17, from chromosome 3, complete sequence Length = 134821 Score = 42.1 bits (21), Expect = 1.3 Identities = 57/69 (82%) Strand = Plus / Plus Query: 308 tccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatttgtgagacggcacg 367 |||||||| ||||| ||||||| |||||| |||| || | || |||| ||||||||| Sbjct: 119453 tccttgccgaggcatgtcctcggcccggagttgaacgcgacgaacttgttcgacggcacg 119512 Query: 368 taccgcagc 376 ||||||||| Sbjct: 119513 taccgcagc 119521
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 308 tccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatttgtgagacggcacg 367 |||||||| ||||| ||||||| |||||| |||| || | || |||| ||||||||| Sbjct: 2206615 tccttgccgaggcatgtcctcggcccggagttgaacgcgacgaacttgttcgacggcacg 2206556 Query: 368 taccgcagc 376 ||||||||| Sbjct: 2206555 taccgcagc 2206547
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 307 gtccttgccaaggcaaatcctcgggccgg 335 ||||||||| |||||||||||||| |||| Sbjct: 27082205 gtccttgccgaggcaaatcctcggcccgg 27082233
>gb|AC092686.3| Homo sapiens BAC clone RP11-767C16 from 2, complete sequence Length = 117755 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 acacaagatacaaataagaaa 139 ||||||||||||||||||||| Sbjct: 45877 acacaagatacaaataagaaa 45857
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 307 gtccttgccaaggcaaatcctcgggccgg 335 ||||||||| |||||||||||||| |||| Sbjct: 53854 gtccttgccgaggcaaatcctcggcccgg 53882
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 307 gtccttgccaaggcaaatcctcgggccgg 335 ||||||||| |||||||||||||| |||| Sbjct: 135407 gtccttgccgaggcaaatcctcggcccgg 135435
>dbj|AK107532.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G12, full insert sequence Length = 1935 Score = 42.1 bits (21), Expect = 1.3 Identities = 57/69 (82%) Strand = Plus / Plus Query: 308 tccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatttgtgagacggcacg 367 |||||||| ||||| ||||||| |||||| |||| || | || |||| ||||||||| Sbjct: 212 tccttgccgaggcatgtcctcggcccggagttgaacgcgacgaacttgttcgacggcacg 271 Query: 368 taccgcagc 376 ||||||||| Sbjct: 272 taccgcagc 280
>dbj|AK104291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F05, full insert sequence Length = 1694 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 164 cgcttcttcagcttcaccatgagcccatttttcatgtgcag 204 |||||||||| ||||||||||| ||| || ||||| ||||| Sbjct: 1557 cgcttcttcaccttcaccatgaccccgttcttcatctgcag 1517
>dbj|AK069029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003E06, full insert sequence Length = 2118 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 307 gtccttgccaaggcaaatcctcgggccgg 335 ||||||||| |||||||||||||| |||| Sbjct: 1523 gtccttgccgaggcaaatcctcggcccgg 1495
>dbj|AK060990.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C11, full insert sequence Length = 1697 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 164 cgcttcttcagcttcaccatgagcccatttttcatgtgcag 204 |||||||||| ||||||||||| ||| || ||||| ||||| Sbjct: 1560 cgcttcttcaccttcaccatgaccccgttcttcatctgcag 1520
>gb|AC150276.2| Mus musculus BAC clone RP23-177G19 from 19, complete sequence Length = 221528 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 118 cacacaagatacaaataagaaaagg 142 |||| |||||||||||||||||||| Sbjct: 103969 cacagaagatacaaataagaaaagg 103945
>gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093E24, complete sequence Length = 146492 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atacaaataagaaaaggagg 145 |||||||||||||||||||| Sbjct: 3856 atacaaataagaaaaggagg 3875
>gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence Length = 174949 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atacaaataagaaaaggagg 145 |||||||||||||||||||| Sbjct: 171214 atacaaataagaaaaggagg 171233
>gb|AC164642.3| Mus musculus BAC clone RP23-248L4 from chromosome 6, complete sequence Length = 212166 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 acaagatacaaataagaaaaggag 144 |||||||||||||| ||||||||| Sbjct: 208166 acaagatacaaataggaaaaggag 208189
>gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome 6, complete sequence Length = 212096 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 acaagatacaaataagaaaaggag 144 |||||||||||||| ||||||||| Sbjct: 154488 acaagatacaaataggaaaaggag 154465
>gb|AC097505.2| Homo sapiens BAC clone RP11-362J17 from 4, complete sequence Length = 184043 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ttattatagcaaaacattcg 56 |||||||||||||||||||| Sbjct: 172966 ttattatagcaaaacattcg 172947
>gb|AC016582.9| Homo sapiens chromosome 19 clone CTD-2554C21, complete sequence Length = 188712 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aaatgagatgtccttgccaa 317 |||||||||||||||||||| Sbjct: 33310 aaatgagatgtccttgccaa 33329
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atacaaataagaaaaggagg 145 |||||||||||||||||||| Sbjct: 11432426 atacaaataagaaaaggagg 11432445
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atacaaataagaaaaggagg 145 |||||||||||||||||||| Sbjct: 8081623 atacaaataagaaaaggagg 8081642
>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417E03 Length = 133019 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atacaaataagaaaaggagg 145 |||||||||||||||||||| Sbjct: 1669 atacaaataagaaaaggagg 1688
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atacaaataagaaaaggagg 145 |||||||||||||||||||| Sbjct: 120135 atacaaataagaaaaggagg 120154
>gb|AC007676.19|AC007676 Homo sapiens, clone RP11-9B17, complete sequence Length = 152138 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 aaatgagatgtccttgccaa 317 |||||||||||||||||||| Sbjct: 102181 aaatgagatgtccttgccaa 102200
>gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosome ul, complete sequence Length = 146640 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 ttatagcagtacacatacaaatac 91 ||||| |||||||||||||||||| Sbjct: 34905 ttataccagtacacatacaaatac 34882
>dbj|AP004926.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13P22, TM0079c, complete sequence Length = 109022 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 caagatacaaataagaaaag 141 |||||||||||||||||||| Sbjct: 101246 caagatacaaataagaaaag 101227
>emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & CYP_b genes Length = 234411 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 acaagatacaaataagaaaaggag 144 ||||||||||||||||| |||||| Sbjct: 216985 acaagatacaaataagacaaggag 217008
>emb|AL645473.12| Mouse DNA sequence from clone RP23-246H17 on chromosome 4, complete sequence Length = 162757 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 acaagatacaaataagaaaaggag 144 ||||||||||||||||| |||||| Sbjct: 122533 acaagatacaaataagacaaggag 122556
>emb|AL731651.1| Mouse DNA sequence from clone XX-PAC129 on chromosome 4, complete sequence Length = 147323 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 acaagatacaaataagaaaaggag 144 ||||||||||||||||| |||||| Sbjct: 129897 acaagatacaaataagacaaggag 129920 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,467,654 Number of Sequences: 3902068 Number of extensions: 3467654 Number of successful extensions: 66894 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 66642 Number of HSP's gapped (non-prelim): 253 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)