ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet24d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY057118.1| Triticum aestivum cold acclimation protein WCOR41... 551 e-154
2ref|XM_469914.1| Oryza sativa (japonica cultivar-group), mRNA 143 5e-31
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 5e-31
4gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 143 5e-31
5gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 143 5e-31
6gb|AF283006.1| Oryza sativa (japonica cultivar-group) cold accli... 143 5e-31
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
8dbj|AK066036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
9dbj|AK060906.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
10dbj|AK060000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
11gb|BT017742.1| Zea mays clone EL01N0449E04.c mRNA sequence 139 8e-30
12gb|AY181208.1| Zea mays cold acclimation protein COR413-PM1 mRNA... 139 8e-30
13gb|AY106041.1| Zea mays PCO103483 mRNA sequence 139 8e-30
14gb|U73216.1|TAU73216 Triticum aestivum cold acclimation protein ... 111 2e-21
15gb|AY112320.1| Zea mays CL360_-2 mRNA sequence 92 2e-15
16gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, co... 46 0.090
17gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 44 0.36
18gb|AC102196.7| Mus musculus chromosome 3, clone RP24-445M20, com... 44 0.36
19emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chro... 42 1.4
20gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosom... 42 1.4
21dbj|AP001095.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.4
22gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 5.6
23gb|AY796304.1| Homo sapiens transforming growth factor, beta rec... 40 5.6
24gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene ... 40 5.6
25emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on ch... 40 5.6
26gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, comp... 40 5.6
27gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, com... 40 5.6
28gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, compl... 40 5.6
29gb|AC154450.3| Mus musculus BAC clone RP24-169J2 from chromosome... 40 5.6
30gb|AY129330.1| Mycobacteriopahge Che8, complete sequence 40 5.6
31gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, com... 40 5.6
32gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Ca... 40 5.6
33dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 5.6
34dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.6 
>gb|AY057118.1| Triticum aestivum cold acclimation protein WCOR413-like protein
           beta form mRNA, complete cds
          Length = 993

 Score =  551 bits (278), Expect = e-154
 Identities = 355/380 (93%), Gaps = 8/380 (2%)
 Strand = Plus / Minus

                                                                       
Query: 45  atcaaggaaacaaagacctgacaccaaaactacaacaaatcgaaacatgtccatcagaa- 103
           ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| 
Sbjct: 888 atcaaggaaacaaagacctcataccagaactacaacaaatcgaaacatgtccatcagaaa 829

                                                                       
Query: 104 ggtacaagcgcgcagagttcatcgactccgga-------taccgaatcaccatcgaaaag 156
           ||||||| || ||| ||||||||| |||||||       |||| ||||||||||||||  
Sbjct: 828 ggtacaaacgtgcacagttcatcggctccggacgagcaataccaaatcaccatcgaaagc 769

                                                                       
Query: 157 gtctacacgatgaatccccaaacatcgaacagaactgcacaaaccaatcaatggccacac 216
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 768 gtctacacgatgaatccccaaacagcgaacagaactgcacaagccaatcaatggccacac 709

                                                                       
Query: 217 tgatagcagtagatgtcctacaggaaccacagcaccaggacccagactgggtagacgaag 276
            |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct: 708 cgatagcagtagatgtcctacaggagccagagcaccaggacccagactgggtaaacgaag 649

                                                                       
Query: 277 agcaggacgatgccgatggtgttggatacgccattggccttcctgaaggcctccctgaag 336
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 648 agcaggacgatgccgatggtgttggacacgccattggccttcctgaaggcctccctgaag 589

                                                                       
Query: 337 cctcctgacaccctgatgtgctcttgaagcaggtagcacccgatggcgaggcatatgaag 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cctcctgacaccctgatgtgctcttgaagcaggtagcacccgatggcgaggcatatgaag 529

                               
Query: 397 acgccgacgaggtcgttcct 416
           ||||||||||||||||||||
Sbjct: 528 acgccgacgaggtcgttcct 509



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcaacaatgatgatgtttttattgatggtcctgtacacacggatcaaggaaacaaaga 60
           |||||||| |||||||||||||||||||  |  ||||| |||  ||||||||||||||||
Sbjct: 966 aatcaacagtgatgatgtttttattgataattatgtacccacaaatcaaggaaacaaaga 907

            
Query: 61  c 61
           |
Sbjct: 906 c 906
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>ref|XM_469914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1118

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 246 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 755 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 696

                                                                       
Query: 306 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 695 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 636

                                           
Query: 366 caggtagcacccgatggcgaggcatatgaaga 397
           ||||||||| || |||  ||||||||||||||
Sbjct: 635 caggtagcatccaatgatgaggcatatgaaga 604
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                            
Query: 246      cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
                |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 31488972 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 31488913

                                                                            
Query: 306      gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
                 || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 31488912 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 31488853

                                                
Query: 366      caggtagcacccgatggcgaggcatatgaaga 397
                ||||||||| || |||  ||||||||||||||
Sbjct: 31488852 caggtagcatccaatgatgaggcatatgaaga 31488821
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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
              sequence
          Length = 133449

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Plus

                                                                          
Query: 246    cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
              |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 103624 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 103683

                                                                          
Query: 306    gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
               || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 103684 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 103743

                                              
Query: 366    caggtagcacccgatggcgaggcatatgaaga 397
              ||||||||| || |||  ||||||||||||||
Sbjct: 103744 caggtagcatccaatgatgaggcatatgaaga 103775
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence,
            complete sequence
          Length = 159091

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Plus

                                                                        
Query: 246  cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
            |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 6828 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 6887

                                                                        
Query: 306  gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
             || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 6888 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 6947

                                            
Query: 366  caggtagcacccgatggcgaggcatatgaaga 397
            ||||||||| || |||  ||||||||||||||
Sbjct: 6948 caggtagcatccaatgatgaggcatatgaaga 6979
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>gb|AF283006.1| Oryza sativa (japonica cultivar-group) cold acclimation protein
           WCOR413-like protein mRNA, complete cds
          Length = 1057

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 246 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 728 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 669

                                                                       
Query: 306 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 668 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 609

                                           
Query: 366 caggtagcacccgatggcgaggcatatgaaga 397
           ||||||||| || |||  ||||||||||||||
Sbjct: 608 caggtagcatccaatgatgaggcatatgaaga 577
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                            
Query: 246      cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
                |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 31579488 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 31579429

                                                                            
Query: 306      gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
                 || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 31579428 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 31579369

                                                
Query: 366      caggtagcacccgatggcgaggcatatgaaga 397
                ||||||||| || |||  ||||||||||||||
Sbjct: 31579368 caggtagcatccaatgatgaggcatatgaaga 31579337
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>dbj|AK066036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049B03, full
           insert sequence
          Length = 1116

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 246 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 752 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 693

                                                                       
Query: 306 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 692 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 633

                                           
Query: 366 caggtagcacccgatggcgaggcatatgaaga 397
           ||||||||| || |||  ||||||||||||||
Sbjct: 632 caggtagcatccaatgatgaggcatatgaaga 601
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>dbj|AK060906.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F05, full
           insert sequence
          Length = 1031

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 246 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 724 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 665

                                                                       
Query: 306 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 664 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 605

                                           
Query: 366 caggtagcacccgatggcgaggcatatgaaga 397
           ||||||||| || |||  ||||||||||||||
Sbjct: 604 caggtagcatccaatgatgaggcatatgaaga 573
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>dbj|AK060000.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G09, full
           insert sequence
          Length = 1061

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 246 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 305
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 772 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 713

                                                                       
Query: 306 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 365
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 712 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 653

                                           
Query: 366 caggtagcacccgatggcgaggcatatgaaga 397
           ||||||||| || |||  ||||||||||||||
Sbjct: 652 caggtagcatccaatgatgaggcatatgaaga 621
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>gb|BT017742.1| Zea mays clone EL01N0449E04.c mRNA sequence
          Length = 1064

 Score =  139 bits (70), Expect = 8e-30
 Identities = 133/154 (86%)
 Strand = Plus / Minus

                                                                       
Query: 257 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 316
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 713 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 654

                                                                       
Query: 317 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 376
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 653 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 594

                                             
Query: 377 cgatggcgaggcatatgaagacgccgacgaggtc 410
           ||||  | |||||||||||||| || ||||||||
Sbjct: 593 cgatcacaaggcatatgaagacaccaacgaggtc 560
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>gb|AY181208.1| Zea mays cold acclimation protein COR413-PM1 mRNA, complete cds
          Length = 1126

 Score =  139 bits (70), Expect = 8e-30
 Identities = 133/154 (86%)
 Strand = Plus / Minus

                                                                       
Query: 257 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 316
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 685 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 626

                                                                       
Query: 317 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 376
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 625 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 566

                                             
Query: 377 cgatggcgaggcatatgaagacgccgacgaggtc 410
           ||||  | |||||||||||||| || ||||||||
Sbjct: 565 cgatcacaaggcatatgaagacaccaacgaggtc 532
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>gb|AY106041.1| Zea mays PCO103483 mRNA sequence
          Length = 1220

 Score =  139 bits (70), Expect = 8e-30
 Identities = 133/154 (86%)
 Strand = Plus / Minus

                                                                       
Query: 257 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 316
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 873 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 814

                                                                       
Query: 317 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 376
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 813 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 754

                                             
Query: 377 cgatggcgaggcatatgaagacgccgacgaggtc 410
           ||||  | |||||||||||||| || ||||||||
Sbjct: 753 cgatcacaaggcatatgaagacaccaacgaggtc 720
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>gb|U73216.1|TAU73216 Triticum aestivum cold acclimation protein WCOR413 (Wcor413) mRNA,
           complete cds
          Length = 896

 Score =  111 bits (56), Expect = 2e-21
 Identities = 125/148 (84%)
 Strand = Plus / Minus

                                                                       
Query: 234 ctacaggaaccacagcaccaggacccagactgggtagacgaagagcaggacgatgccgat 293
           ||||||||||||||  || | | ||||||| ||||||| |||||| |||| |||||||||
Sbjct: 696 ctacaggaaccacatgacgacggcccagaccgggtagatgaagaggaggaggatgccgat 637

                                                                       
Query: 294 ggtgttggatacgccattggccttcctgaaggcctccctgaagcctcctgacaccctgat 353
           |||||||||   |||||||| ||||  |||||||||| ||| ||| || ||| || ||||
Sbjct: 636 ggtgttggaccagccattgggcttctggaaggcctccttgaggccccccgacgccttgat 577

                                       
Query: 354 gtgctcttgaagcaggtagcacccgatg 381
           |||||| || ||||||||||||||||||
Sbjct: 576 gtgctcgtggagcaggtagcacccgatg 549
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>gb|AY112320.1| Zea mays CL360_-2 mRNA sequence
          Length = 661

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                       
Query: 341 ctgacaccctgatgtgctcttgaagcaggtagcacccgatggcgaggcatatgaagacgc 400
           ||||| |||||||||||||||| ||||||||||| ||||| || |||||||||||||| |
Sbjct: 262 ctgacgccctgatgtgctcttggagcaggtagcatccgatcgcaaggcatatgaagacac 203

                     
Query: 401 cgacgaggtc 410
           ||||||||||
Sbjct: 202 cgacgaggtc 193
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>gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, complete sequence
          Length = 189781

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 58    agacctgacaccaaaactacaac 80
             |||||||||||||||||||||||
Sbjct: 18044 agacctgacaccaaaactacaac 18066
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>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    aaacaaagacctgacaccaaaa 73
             ||||||||||||||||||||||
Sbjct: 20577 aaacaaagacctgacaccaaaa 20556
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>gb|AC102196.7| Mus musculus chromosome 3, clone RP24-445M20, complete sequence
          Length = 166532

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 52    aaacaaagacctgacaccaaaa 73
             ||||||||||||||||||||||
Sbjct: 45002 aaacaaagacctgacaccaaaa 45023
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>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete
             sequence
          Length = 209619

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   ctacaggaaccacagcaccag 254
             |||||||||||||||||||||
Sbjct: 22753 ctacaggaaccacagcaccag 22733
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>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete
             sequence
          Length = 209280

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   ctacaggaaccacagcaccag 254
             |||||||||||||||||||||
Sbjct: 92501 ctacaggaaccacagcaccag 92481
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>dbj|AP001095.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-802O4, complete
              sequence
          Length = 187824

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 329    ccctgaagcctcctgacaccc 349
              |||||||||||||||||||||
Sbjct: 132987 ccctgaagcctcctgacaccc 133007
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 270     gacgaagagcaggacgatgccgat 293
               ||||||||||| ||||||||||||
Sbjct: 1930168 gacgaagagcatgacgatgccgat 1930145
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>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan,
              300kDa) (TGFBR3) gene, complete cds
          Length = 226174

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    ccttcctgaaggcctccctg 333
              ||||||||||||||||||||
Sbjct: 159484 ccttcctgaaggcctccctg 159465
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>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete
             sequence
          Length = 99318

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   gcacaaaccaatcaatggcc 212
             ||||||||||||||||||||
Sbjct: 81145 gcacaaaccaatcaatggcc 81164
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>emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on chromosome 1 Contains part
             of the TGFBR3 gene fortransforming growth factor, beta
             receptor III (betaglycan, 300kDa), complete sequence
          Length = 34325

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   ccttcctgaaggcctccctg 333
             ||||||||||||||||||||
Sbjct: 34166 ccttcctgaaggcctccctg 34185
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>gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, complete sequence
          Length = 226170

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     caatgatgatgtttttattgatgg 30
             ||||||||||||||||||| ||||
Sbjct: 92347 caatgatgatgtttttattaatgg 92324
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>gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, complete sequence
          Length = 216334

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    caaggaaacaaagacctgac 66
             ||||||||||||||||||||
Sbjct: 92242 caaggaaacaaagacctgac 92223
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>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence
          Length = 247769

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   aaggaaacaaagacctgaca 67
            ||||||||||||||||||||
Sbjct: 1464 aaggaaacaaagacctgaca 1445
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>gb|AC154450.3| Mus musculus BAC clone RP24-169J2 from chromosome 12, complete sequence
          Length = 168477

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     caatgatgatgtttttattgatgg 30
             |||||||||| |||||||||||||
Sbjct: 96925 caatgatgatatttttattgatgg 96948
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>gb|AY129330.1| Mycobacteriopahge Che8, complete sequence
          Length = 59471

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   gacgatgccgatggtgttgg 301
             ||||||||||||||||||||
Sbjct: 58072 gacgatgccgatggtgttgg 58053
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>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aaggaaacaaagacctgaca 67
              ||||||||||||||||||||
Sbjct: 195672 aaggaaacaaagacctgaca 195653
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>gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 107895

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   caccaggacccagactgggt 268
             ||||||||||||||||||||
Sbjct: 35349 caccaggacccagactgggt 35368
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     acaggaaccacagcaccagg 255
               ||||||||||||||||||||
Sbjct: 1645209 acaggaaccacagcaccagg 1645190
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 271     acgaagagcaggacgatgccgatg 294
               |||||||||||| |||||||||||
Sbjct: 2496734 acgaagagcaggccgatgccgatg 2496711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,235,378
Number of Sequences: 3902068
Number of extensions: 3235378
Number of successful extensions: 64690
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64519
Number of HSP's gapped (non-prelim): 170
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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