ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet23h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL15_ARCFU (O28376) 50S ribosomal protein L15P 27 9.0

>RL15_ARCFU (O28376) 50S ribosomal protein L15P|
          Length = 179

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 157 KLVLPPFLNIRPFKDFIRRLRTEQNE*IYTLKYVYVHP 44
           K++   +LN++  K+ +R L+ E     YT +Y+Y  P
Sbjct: 68  KILRKDYLNVQAVKETLRWLKEEGKLDDYTYRYLYSRP 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,000,500
Number of Sequences: 219361
Number of extensions: 707550
Number of successful extensions: 1269
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top