>emb|X92403.1|HVGTRNAR1 H.vulgare mRNA for glutamyl-tRNA reductase, 1st isoform
          Length = 1938

 Score =  529 bits (267), Expect = e-147
 Identities = 295/306 (96%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                        
Query: 8    ccaacagagtatattatagtacagctagaaaattgggctctaaccacagcagccacagta 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 ccaacagagtatattatagtacagctagaaaattgggctctaaccacagcagccacagta 1847

                                                                        
Query: 68   aataatgtacacaggcagttttggagcaaacatgcttcgccgctcctctctacaacacat 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1846 aataatgtacacaggcagttttggagcaaacatgcttcgccgctcctctctacaacacat 1787

                                                                        
Query: 128  tcggaggctgccatggctaattcacggcacaggaagaactcaggagtaagtggaggatcn 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1786 tcggaggctgccatggctaattcacggcacaggaagaactcaggagtaagtggaggatc- 1728

                                                                        
Query: 188  nnnnnnnnntactgggattagaatgtagcgaaattctgggagtggtataagtagatatac 247
                     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1727 aaaaaaaaatactgggattagaatgtagcgaaattctgggagtggtataagtagatatac 1668

                                                                        
Query: 248  agacggacaactgtctcctggtctcagctttgggtcttctctaccttggctttgatcctc 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1667 agacggacaactgtctcctggtctcagctttgggtcttctctaccttggctttgatcttc 1608

                  
Query: 308  tgctcg 313
            ||||||
Sbjct: 1607 tgctcg 1602

>dbj|D88382.1| Hordeum vulgare hemA1 mRNA for glutamyl-tRNA reductase, complete cds
          Length = 1864

 Score =  529 bits (267), Expect = e-147
 Identities = 295/306 (96%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                        
Query: 8    ccaacagagtatattatagtacagctagaaaattgggctctaaccacagcagccacagta 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 ccaacagagtatattatagtacagctagaaaattgggctctaaccacagcagccacagta 1802

                                                                        
Query: 68   aataatgtacacaggcagttttggagcaaacatgcttcgccgctcctctctacaacacat 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 aataatgtacacaggcagttttggagcaaacatgcttcgccgctcctctctacaacacat 1742

                                                                        
Query: 128  tcggaggctgccatggctaattcacggcacaggaagaactcaggagtaagtggaggatcn 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1741 tcggaggctgccatggctaattcacggcacaggaagaactcaggagtaagtggaggatc- 1683

                                                                        
Query: 188  nnnnnnnnntactgggattagaatgtagcgaaattctgggagtggtataagtagatatac 247
                     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1682 aaaaaaaaatactgggattagaatgtagcgaaattctgggagtggtataagtagatatac 1623

                                                                        
Query: 248  agacggacaactgtctcctggtctcagctttgggtcttctctaccttggctttgatcctc 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1622 agacggacaactgtctcctggtctcagctttgggtcttctctaccttggctttgatcttc 1563

                  
Query: 308  tgctcg 313
            ||||||
Sbjct: 1562 tgctcg 1557

>emb|X86101.1|HVHEMA1IS H.vulgare mRNA for glutamyl-tRNA reductase (1st isoform)
          Length = 1997

 Score =  192 bits (97), Expect = 5e-46
 Identities = 100/101 (99%)
 Strand = Plus / Minus

                                                                        
Query: 213  tagcgaaattctgggagtggtataagtagatatacagacggacaactgtctcctggtctc 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 tagcgaaattctgggagtggtataagtagatatacagacggacaactgtctcctggtctc 1918

                                                     
Query: 273  agctttgggtcttctctaccttggctttgatcctctgctcg 313
            |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1917 agctttgggtcttctctaccttggctttgatcttctgctcg 1877

>gb|BT009149.1| Triticum aestivum clone wl1n.pk0060.b11:fis, full insert mRNA
            sequence
          Length = 1480

 Score =  168 bits (85), Expect = 7e-39
 Identities = 106/113 (93%)
 Strand = Plus / Minus

                                                                        
Query: 200  tgggattagaatgtagcgaaattctgggagtggtataagtagatatacagacggacaact 259
            ||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||| |
Sbjct: 1443 tgggattagaatgtagcgacattctgggagcagtataagtagatatacagacgggcaagt 1384

                                                                 
Query: 260  gtctcctggtctcagctttgggtcttctctaccttggctttgatcctctgctc 312
            |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 1383 gtctcctggtctcagctttgggtcttctctaccttggccttgatcttctgctc 1331

>emb|X86102.1|HVHEMA2IS H.vulgare mRNA for glutamyl-tRNA reductase (2nd isoform)
          Length = 1703

 Score =  121 bits (61), Expect = 1e-24
 Identities = 118/135 (87%), Gaps = 9/135 (6%)
 Strand = Plus / Minus

                                                                        
Query: 8    ccaacagagtatattatagtacagctagaaaa-ttgggctctaaccacagcagccacagt 66
            ||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct: 1657 ccaacagagtattatatagtacagcttgaaaaattgggctctaaccacagcagccacaat 1598

                                                                        
Query: 67   aaataatgtaca----caggcagttttggagcaaacatgcttcgccgctcc----tctct 118
            || |||||||||    ||||||||| ||||||||||||||||||| |||||    |||||
Sbjct: 1597 aactaatgtacacaggcaggcagttctggagcaaacatgcttcgctgctcctcgatctct 1538

                           
Query: 119  acaacacattcggag 133
            |||||||||| ||||
Sbjct: 1537 acaacacatttggag 1523



 Score =  101 bits (51), Expect = 1e-18
 Identities = 80/87 (91%), Gaps = 2/87 (2%)
 Strand = Plus / Minus

                                                                        
Query: 229  gtggtataagtagatatacaga-cggacaactgtctcctggtc-tcagctttgggtcttc 286
            |||||||||||||||||||||| ||||  || ||||||||||| ||||||||||||||||
Sbjct: 1443 gtggtataagtagatatacagaacggaggaccgtctcctggtcctcagctttgggtcttc 1384

                                       
Query: 287  tctaccttggctttgatcctctgctcg 313
            ||||||||||| |||||| ||||||||
Sbjct: 1383 tctaccttggccttgatcttctgctcg 1357

>gb|AC154880.17| Mus musculus chromosome 15, clone RP24-191N3, complete sequence
          Length = 184220

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 289    taccttggctttgatcctctgc 310
              ||||||||||||||||||||||
Sbjct: 106288 taccttggctttgatcctctgc 106267

>ref|NM_166591.1| Drosophila melanogaster CG30416-RA (CG30416), mRNA
          Length = 1828

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 280 ggtcttctctaccttggcttt 300
           |||||||||||||||||||||
Sbjct: 938 ggtcttctctaccttggcttt 918

>gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, BAC clone
             BACR04G19, complete sequence
          Length = 181955

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   ggtcttctctaccttggcttt 300
             |||||||||||||||||||||
Sbjct: 90456 ggtcttctctaccttggcttt 90476

>gb|AC102761.12| Mus musculus chromosome 8, clone RP24-227E21, complete sequence
          Length = 162108

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 283    cttctctaccttggctttgat 303
              |||||||||||||||||||||
Sbjct: 104059 cttctctaccttggctttgat 104039

>gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68 of 73 of the complete
              sequence
          Length = 299331

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 280    ggtcttctctaccttggcttt 300
              |||||||||||||||||||||
Sbjct: 142933 ggtcttctctaccttggcttt 142953

>gb|BT001295.1| Drosophila melanogaster AT11052 full insert cDNA
          Length = 1889

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 280 ggtcttctctaccttggcttt 300
           |||||||||||||||||||||
Sbjct: 927 ggtcttctctaccttggcttt 907

>emb|AL390294.19| Human DNA sequence from clone RP11-379F12 on chromosome 10 Contains the
             3' end of the TAF3 gene for TAF3 RNA polymerase II, TATA
             box binding protein (TBP)-associated factor, 140kDa
             (TAF140,TAFII140), the GATA3 gene for GATA binding protein
             3 (HDR,MGC5445), two novel genes and 3 CpG islands,
             complete sequence
          Length = 151559

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    tagaaaattgggctctaacc 52
             ||||||||||||||||||||
Sbjct: 34496 tagaaaattgggctctaacc 34477

>emb|AL357041.11| Human DNA sequence from clone RP11-221L2 on chromosome 1 Contains ESTs,
              STSs and GSSs, complete sequence
          Length = 130794

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    ggaagaactcaggagtaagt 178
              ||||||||||||||||||||
Sbjct: 120623 ggaagaactcaggagtaagt 120604

>emb|AL139234.19| Human DNA sequence from clone RP3-438D16 on chromosome Xq24-26.1
             Contains the PDCD8 gene for programmed cell death 8
             (apoptosis-inducing factor) (AIF), the RAB33A gene for
             RAB33A, member RAS oncogene family (S10, RabS10), the 3'
             end of a novel gene (FLJ20095) and two CpG islands,
             complete sequence
          Length = 90007

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gtacacaggcagttttggag 93
             ||||||||||||||||||||
Sbjct: 15014 gtacacaggcagttttggag 15033

>emb|AL035671.5|HS420J14 Human DNA sequence from clone RP3-420J14 on chromosome 6p24.1-24.3
             Contains an S-adenosylmethionine decarboxylase 1 (AMD1)
             (EC 4.1.1.50, ADOMETDC) pseudogene and a CpG island,
             complete sequence
          Length = 145150

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    atgtacacaggcagttttgg 91
             ||||||||||||||||||||
Sbjct: 99734 atgtacacaggcagttttgg 99753

>emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in linkage group 9,
              complete sequence
          Length = 210830

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 150    cacggcacaggaagaactcaggag 173
              ||||||||||||||||| ||||||
Sbjct: 141820 cacggcacaggaagaacgcaggag 141797

>gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, complete sequence
          Length = 193553

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   atatacagacggacaactgt 261
             ||||||||||||||||||||
Sbjct: 42882 atatacagacggacaactgt 42863

>gb|U60902.1|OCU60902 Otolemur crassicaudatus epsilon-, gamma-, delta-, and beta-globin
            genes, complete cds, and eta-globin pseudogene
          Length = 57113

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  ccttggctttgatcctctgc 310
            ||||||||||||||||||||
Sbjct: 5822 ccttggctttgatcctctgc 5841

>dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1184D12
          Length = 176854

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 266    tggtctcagctttgggtcttctct 289
              |||| |||||||||||||||||||
Sbjct: 128780 tggtgtcagctttgggtcttctct 128803


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,600,222
Number of Sequences: 3902068
Number of extensions: 2600222
Number of successful extensions: 45206
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45166
Number of HSP's gapped (non-prelim): 36
length of query: 313
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 291
effective length of database: 17,147,199,772
effective search space: 4989835133652
effective search space used: 4989835133652
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)