ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet23g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YR692_MIMIV (Q5UNV0) Hypothetical protein R692 33 0.27
2NHX3_ARATH (Q84WG1) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exch... 32 0.78
3NU4M_LUMTE (Q34949) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 28 8.6

>YR692_MIMIV (Q5UNV0) Hypothetical protein R692|
          Length = 354

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = +3

Query: 78  SISAQRKANKSARLRVAYN*SISNRVKTHSSNVPPQTGGKN 200
           ++S+Q  AN++A +   YN S+++    +++N   QTGG++
Sbjct: 288 NVSSQNNANRNASMATTYNNSVNSANSINTANTRSQTGGQD 328



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>NHX3_ARATH (Q84WG1) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3)|
           (NHE-3)
          Length = 503

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -1

Query: 189 LFEEARWMNEFLPC*ILISCRLPVVLRI-------CLLFSEH*C*ILLIAVLVPVFIN 37
           L EE RWMNE +   I+ SC   V+L I        L+FSE    +  I +L P+  N
Sbjct: 42  LLEETRWMNESITALIIGSCTGIVILLISGGKSSRILVFSED---LFFIYLLPPIIFN 96



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>NU4M_LUMTE (Q34949) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3)|
          (NADH dehydrogenase subunit 4)
          Length = 452

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 75 ILLIAVLVPVFINIYTWILLIVLLA 1
          +L+  +L+P+ +N+Y WI+ + L A
Sbjct: 7  VLMSLLLLPLIVNLYPWIIALTLSA 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,846,620
Number of Sequences: 219361
Number of extensions: 713039
Number of successful extensions: 1740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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