| Clone Name | rbaet23g11 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | YR692_MIMIV (Q5UNV0) Hypothetical protein R692 | 33 | 0.27 | 2 | NHX3_ARATH (Q84WG1) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exch... | 32 | 0.78 | 3 | NU4M_LUMTE (Q34949) NADH-ubiquinone oxidoreductase chain 4 (EC 1... | 28 | 8.6 |
|---|
>YR692_MIMIV (Q5UNV0) Hypothetical protein R692| Length = 354 Score = 33.1 bits (74), Expect = 0.27 Identities = 13/41 (31%), Positives = 27/41 (65%) Frame = +3 Query: 78 SISAQRKANKSARLRVAYN*SISNRVKTHSSNVPPQTGGKN 200 ++S+Q AN++A + YN S+++ +++N QTGG++ Sbjct: 288 NVSSQNNANRNASMATTYNNSVNSANSINTANTRSQTGGQD 328
>NHX3_ARATH (Q84WG1) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3)| (NHE-3) Length = 503 Score = 31.6 bits (70), Expect = 0.78 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Frame = -1 Query: 189 LFEEARWMNEFLPC*ILISCRLPVVLRI-------CLLFSEH*C*ILLIAVLVPVFIN 37 L EE RWMNE + I+ SC V+L I L+FSE + I +L P+ N Sbjct: 42 LLEETRWMNESITALIIGSCTGIVILLISGGKSSRILVFSED---LFFIYLLPPIIFN 96
>NU4M_LUMTE (Q34949) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3)| (NADH dehydrogenase subunit 4) Length = 452 Score = 28.1 bits (61), Expect = 8.6 Identities = 9/25 (36%), Positives = 18/25 (72%) Frame = -1 Query: 75 ILLIAVLVPVFINIYTWILLIVLLA 1 +L+ +L+P+ +N+Y WI+ + L A Sbjct: 7 VLMSLLLLPLIVNLYPWIIALTLSA 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,846,620 Number of Sequences: 219361 Number of extensions: 713039 Number of successful extensions: 1740 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1740 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)