ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet23g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence Length = 141582 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 329 tcctcgtcgccgtcgacctcct 350 |||||||||||||||||||||| Sbjct: 109463 tcctcgtcgccgtcgacctcct 109442
>gb|AC148878.2| Chlamydomonas reinhardtii clone cr-29B2, complete sequence Length = 64153 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 tgtcctcctcctcgctgtcctc 333 |||||||||||||||||||||| Sbjct: 3344 tgtcctcctcctcgctgtcctc 3323
>gb|AY491395.1| Rattus norvegicus ras-related C3 botulinum toxin substrate 1 mRNA, complete cds Length = 792 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 361 cttcagcttctcaatcgtgtcc 382 |||||||||||||||||||||| Sbjct: 390 cttcagcttctcaatcgtgtcc 369
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 tcctcgtcgccgtcgacctcct 350 |||||||||||||||||||||| Sbjct: 32770078 tcctcgtcgccgtcgacctcct 32770099 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 gtcctcgtcgccgtcgacctcctc 351 ||||||||||||||||||| |||| Sbjct: 10589924 gtcctcgtcgccgtcgaccacctc 10589901
>emb|CR688227.2|CNS0FTZJ Tetraodon nigroviridis full-length cDNA Length = 1135 Score = 44.1 bits (22), Expect = 0.36 Identities = 34/38 (89%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctcgtcgccgtcgacctcctc 351 ||||||||||| |||||||||||||||| ||||||| Sbjct: 445 tcctcctcctcctcgtcctcgtcgccgtcgtcctcctc 408
>emb|CR667946.2|CNS0FECW Tetraodon nigroviridis full-length cDNA Length = 1530 Score = 44.1 bits (22), Expect = 0.36 Identities = 34/38 (89%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctcgtcgccgtcgacctcctc 351 ||||||||||| |||||||||||||||| ||||||| Sbjct: 837 tcctcctcctcctcgtcctcgtcgccgtcgtcctcctc 800
>ref|NM_134366.1| Rattus norvegicus ras-related C3 botulinum toxin substrate 1 (Rac1), mRNA Length = 792 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 361 cttcagcttctcaatcgtgtcc 382 |||||||||||||||||||||| Sbjct: 390 cttcagcttctcaatcgtgtcc 369
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 tgtcctcctcctcgctgtcctc 333 |||||||||||||||||||||| Sbjct: 920460 tgtcctcctcctcgctgtcctc 920439
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 tcctcgtcgccgtcgacctcct 350 |||||||||||||||||||||| Sbjct: 32860588 tcctcgtcgccgtcgacctcct 32860609 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 gtcctcgtcgccgtcgacctcctc 351 ||||||||||||||||||| |||| Sbjct: 10588025 gtcctcgtcgccgtcgaccacctc 10588002
>ref|NM_210363.1| Eremothecium gossypii AER150Wp (AER150W), mRNA Length = 1257 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 tgtcctcctcctcgctgtcctc 333 |||||||||||||||||||||| Sbjct: 328 tgtcctcctcctcgctgtcctc 307
>dbj|AK068731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158I01, full insert sequence Length = 1237 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 329 tcctcgtcgccgtcgacctcct 350 |||||||||||||||||||||| Sbjct: 544 tcctcgtcgccgtcgacctcct 523
>gb|AC122457.4| Mus musculus BAC clone RP24-266P11 from chromosome 12, complete sequence Length = 159954 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 cacctgctagcttcagcttct 371 ||||||||||||||||||||| Sbjct: 78018 cacctgctagcttcagcttct 77998
>ref|XM_814751.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053504147.240) partial mRNA Length = 3552 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 313 gtcctcctcctcgctgtcctcgtcg 337 |||||||||||||||||| |||||| Sbjct: 3390 gtcctcctcctcgctgtcgtcgtcg 3366
>emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on chromosome 9 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 187738 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 aaaatccatgtataaatgttg 40 ||||||||||||||||||||| Sbjct: 58302 aaaatccatgtataaatgttg 58282
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tcctcctcgctgtcctcgtcg 337 ||||||||||||||||||||| Sbjct: 3349065 tcctcctcgctgtcctcgtcg 3349085
>emb|X76713.1|ZMTRPA Z.mays (C6000237) trpA gene Length = 4796 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctcg 334 ||||||||||||||||||||| Sbjct: 1863 tcctcctcctcgctgtcctcg 1883
>gb|AY254103.1| Zea mays clone ASJ-Bx1.1 indole synthase mRNA, complete cds Length = 1044 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctcg 334 ||||||||||||||||||||| Sbjct: 25 tcctcctcctcgctgtcctcg 45
>gb|AC008188.4|AC008188 Drosophila melanogaster, chromosome 2R, region 56A2-56B1, BAC clone BACR08I18, complete sequence Length = 160650 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 aacaggaggaaaaaactaaca 205 ||||||||||||||||||||| Sbjct: 108920 aacaggaggaaaaaactaaca 108900
>gb|AE003797.3| Drosophila melanogaster chromosome 2R, section 53 of 73 of the complete sequence Length = 306854 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 aacaggaggaaaaaactaaca 205 ||||||||||||||||||||| Sbjct: 141210 aacaggaggaaaaaactaaca 141190
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 tcctcctcgctgtcctcgtcg 337 ||||||||||||||||||||| Sbjct: 3292768 tcctcctcgctgtcctcgtcg 3292748
>gb|AC173483.1| Mus musculus BAC clone RP23-281C13 from chromosome 12, complete sequence Length = 182922 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 cacctgctagcttcagcttct 371 ||||||||||||||||||||| Sbjct: 163288 cacctgctagcttcagcttct 163268
>ref|XM_517642.1| PREDICTED: Pan troglodytes similar to zinc finger protein 622; zinc finger-like protein 9 (LOC461736), mRNA Length = 1760 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 548 tcctcctcctcgctgtcctc 529
>gb|AC169382.2| Mus musculus chromosome 1, clone wi1-1860G10, complete sequence Length = 40385 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 agagaaaagcaaacaaatcc 110 |||||||||||||||||||| Sbjct: 689 agagaaaagcaaacaaatcc 708
>ref|NM_185566.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1017 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 tctctctcgctcacagctct 417 |||||||||||||||||||| Sbjct: 884 tctctctcgctcacagctct 865
>ref|NM_033414.2| Homo sapiens zinc finger protein 622 (ZNF622), mRNA Length = 1710 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 725 tcctcctcctcgctgtcctc 706
>ref|XM_323359.1| Neurospora crassa OR74A hypothetical protein (NCU04041.1) partial mRNA Length = 2418 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 1277 tcctcctcctcgctgtcctc 1258
>ref|XM_952563.1| Neurospora crassa OR74A hypothetical protein (NCU04041.1) partial mRNA Length = 2418 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 1277 tcctcctcctcgctgtcctc 1258
>gb|BC010545.1| Homo sapiens zinc finger protein 622, mRNA (cDNA clone MGC:17552 IMAGE:3463070), complete cds Length = 1695 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 714 tcctcctcctcgctgtcctc 695
>gb|BC008752.2| Homo sapiens zinc finger protein 622, mRNA (cDNA clone MGC:2485 IMAGE:3345757), complete cds Length = 1710 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 725 tcctcctcctcgctgtcctc 706
>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0071K13, complete sequence Length = 176150 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 316 ctcctcctcgctgtcctcgtcgccgtcg 343 ||||||||||| ||||||||| |||||| Sbjct: 65657 ctcctcctcgccgtcctcgtcaccgtcg 65630
>ref|XM_540542.2| PREDICTED: Canis familiaris similar to DIPB protein (LOC483424), mRNA Length = 2510 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tcctcctcgctgtcctcgtc 336 |||||||||||||||||||| Sbjct: 791 tcctcctcgctgtcctcgtc 772
>gb|AC091320.5| Homo sapiens BAC clone RP11-447A2 from 7, complete sequence Length = 179728 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 tgcctcctcaaacaggagga 194 |||||||||||||||||||| Sbjct: 178879 tgcctcctcaaacaggagga 178860
>gb|AC099648.5| Homo sapiens BAC clone RP11-589K15 from 7, complete sequence Length = 69926 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 tgcctcctcaaacaggagga 194 |||||||||||||||||||| Sbjct: 1151 tgcctcctcaaacaggagga 1132
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 gtcctcgtcgccgtcgacctcctc 351 ||||||||||||||||||| |||| Sbjct: 6838 gtcctcgtcgccgtcgaccacctc 6815
>ref|XM_795626.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC592688 (LOC592688), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 875 tcctcctcctcgctgtcctc 856
>emb|AL162586.26| Human DNA sequence from clone RP11-228B15 on chromosome 9 Contains the 5' end of the SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3), the CDK9 gene for cyclin-dependent kinase 9 (CDC2-related kinase) (TAK, C-2k, CDC2L4, PITALRE), the FPGS gene for folylpolyglutamate synthase (folylpolyglutamate synthetase), the 3' end fo the ENG gene for endoglin (Osler-Rendu-Weber syndrome 1)(END, ORW, HHT1, ORW1, CD105), a novel gene and five CpG islands, complete sequence Length = 80642 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gtgcctcctcaaacaggagg 193 |||||||||||||||||||| Sbjct: 60350 gtgcctcctcaaacaggagg 60331
>emb|AL138914.9| Human DNA sequence from clone RP11-15L1 on chromosome 13 Contains part of a novel gene, complete sequence Length = 153439 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ctcagagaaaagcaaacaaa 107 |||||||||||||||||||| Sbjct: 62027 ctcagagaaaagcaaacaaa 62008
>emb|X91637.1|GGBRG1PRT G.gallus mRNA for BRG1 protein Length = 4893 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 4688 tcctcctcctcgctgtcctc 4669
>emb|BX897678.1| Neurospora crassa DNA linkage group VI BAC clone B10H18 Length = 74165 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 47949 tcctcctcctcgctgtcctc 47930
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence Length = 153308 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 gtcctcgtcgccgtcgacctcctc 351 ||||||||||||||||||| |||| Sbjct: 145737 gtcctcgtcgccgtcgaccacctc 145714
>gb|AC104508.4| Drosophila melanogaster 3L BAC RP98-1O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163279 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgtcctcgtcgccgtcga 344 |||||||||||||||||||| Sbjct: 77605 gctgtcctcgtcgccgtcga 77586
>gb|AC091208.4| Drosophila melanogaster 3L BAC RP98-46N3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182705 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgtcctcgtcgccgtcga 344 |||||||||||||||||||| Sbjct: 108256 gctgtcctcgtcgccgtcga 108237
>emb|CR626791.1| full-length cDNA clone CS0DH005YL20 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1564 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 712 tcctcctcctcgctgtcctc 693
>emb|CR624583.1| full-length cDNA clone CS0DE008YM04 of Placenta of Homo sapiens (human) Length = 1651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 711 tcctcctcctcgctgtcctc 692
>emb|CR624161.1| full-length cDNA clone CS0DA007YA22 of Neuroblastoma of Homo sapiens (human) Length = 1623 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 691 tcctcctcctcgctgtcctc 672
>emb|CR609231.1| full-length cDNA clone CS0DB006YC06 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 1585 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 679 tcctcctcctcgctgtcctc 660
>emb|CR605829.1| full-length cDNA clone CS0DC027YH22 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1646 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 691 tcctcctcctcgctgtcctc 672
>emb|CR604339.1| full-length cDNA clone CS0DI004YL04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1638 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 729 tcctcctcctcgctgtcctc 710
>gb|AC104147.4| Drosophila melanogaster X BAC RP98-33I18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170490 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cctcctcctcgctgtcctcg 334 |||||||||||||||||||| Sbjct: 122313 cctcctcctcgctgtcctcg 122294
>gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169618 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cctcctcctcgctgtcctcg 334 |||||||||||||||||||| Sbjct: 37626 cctcctcctcgctgtcctcg 37607
>emb|CR599167.1| full-length cDNA clone CL0BB017ZD03 of Neuroblastoma of Homo sapiens (human) Length = 1673 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 708 tcctcctcctcgctgtcctc 689
>emb|CR591618.1| full-length cDNA clone CS0DK007YG24 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1686 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 732 tcctcctcctcgctgtcctc 713
>gb|AC020980.6| Homo sapiens chromosome 5 clone RPCI-1_167G20, complete sequence Length = 175177 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 164084 tcctcctcctcgctgtcctc 164103
>ref|NM_166917.1| Drosophila melanogaster CG11596-RB, transcript variant B (CG11596), mRNA Length = 1657 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cctcctcctcgctgtcctcg 334 |||||||||||||||||||| Sbjct: 1230 cctcctcctcgctgtcctcg 1211
>ref|NM_166916.1| Drosophila melanogaster CG11596-RC, transcript variant C (CG11596), mRNA Length = 1803 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cctcctcctcgctgtcctcg 334 |||||||||||||||||||| Sbjct: 1376 cctcctcctcgctgtcctcg 1357
>ref|NM_130607.2| Drosophila melanogaster CG11596-RA, transcript variant A (CG11596), mRNA Length = 1733 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cctcctcctcgctgtcctcg 334 |||||||||||||||||||| Sbjct: 1306 cctcctcctcgctgtcctcg 1287
>gb|AY046059.1| Homo sapiens zinc finger-like protein 9 (ZPR9) mRNA, complete cds Length = 1702 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 736 tcctcctcctcgctgtcctc 717
>gb|AC022113.6| Homo sapiens chromosome 5 clone CTC-461F20, complete sequence Length = 188570 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 161155 tcctcctcctcgctgtcctc 161136
>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete sequence Length = 182200 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 116502 tcctcctcctcgctgtcctc 116483
>emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on chromosome 2, complete sequence Length = 157571 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cctcaaacaggaggaaaaaa 199 |||||||||||||||||||| Sbjct: 75161 cctcaaacaggaggaaaaaa 75142
>gb|AY051951.1| Drosophila melanogaster LD42227 full length cDNA Length = 1750 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cctcctcctcgctgtcctcg 334 |||||||||||||||||||| Sbjct: 1306 cctcctcctcgctgtcctcg 1287
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gtccgcaaacagcttgtcgt 398 |||||||||||||||||||| Sbjct: 1232021 gtccgcaaacagcttgtcgt 1232002
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 316 ctcctcctcgctgtcctcgtcgccgtcg 343 ||||||||||| ||||||||| |||||| Sbjct: 14955870 ctcctcctcgccgtcctcgtcaccgtcg 14955843
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cgctgtcctcgtcgccgtcg 343 |||||||||||||||||||| Sbjct: 9883381 cgctgtcctcgtcgccgtcg 9883362
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctcgtcg 337 |||||||||||||||| ||||||| Sbjct: 6112136 tcctcctcctcgctgtgctcgtcg 6112159
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cctcgctgtcctcgtcgccg 340 |||||||||||||||||||| Sbjct: 37316208 cctcgctgtcctcgtcgccg 37316227
>ref|XM_392300.2| PREDICTED: Apis mellifera similar to CG17941-PA (LOC408767), mRNA Length = 9924 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 tcctcctcgctgtcctcgtcgccg 340 |||||||||| ||||||||||||| Sbjct: 8780 tcctcctcgccgtcctcgtcgccg 8757
>ref|NM_205059.1| Gallus gallus BRG1 protein (BRG1), mRNA Length = 4893 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 4688 tcctcctcctcgctgtcctc 4669
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cctcgctgtcctcgtcgccg 340 |||||||||||||||||||| Sbjct: 28242 cctcgctgtcctcgtcgccg 28261
>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0679C12 Length = 153666 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cctcgctgtcctcgtcgccg 340 |||||||||||||||||||| Sbjct: 153197 cctcgctgtcctcgtcgccg 153216
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctcgtcg 337 |||||||||||||||| ||||||| Sbjct: 25955 tcctcctcctcgctgtgctcgtcg 25978
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644A02 Length = 144954 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctcgtcg 337 |||||||||||||||| ||||||| Sbjct: 116635 tcctcctcctcgctgtgctcgtcg 116658
>dbj|AP005724.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0017I18 Length = 146304 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cgctgtcctcgtcgccgtcg 343 |||||||||||||||||||| Sbjct: 38828 cgctgtcctcgtcgccgtcg 38809
>dbj|AP005701.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0095I04 Length = 138924 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cgctgtcctcgtcgccgtcg 343 |||||||||||||||||||| Sbjct: 66068 cgctgtcctcgtcgccgtcg 66049
>dbj|AK120019.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C01, full insert sequence Length = 1446 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cctcgctgtcctcgtcgccg 340 |||||||||||||||||||| Sbjct: 891 cctcgctgtcctcgtcgccg 910
>dbj|AK104975.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A11, full insert sequence Length = 1004 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctcgtcg 337 |||||||||||||||| ||||||| Sbjct: 256 tcctcctcctcgctgtgctcgtcg 279
>dbj|AK073565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041B13, full insert sequence Length = 947 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctcgtcg 337 |||||||||||||||| ||||||| Sbjct: 260 tcctcctcctcgctgtgctcgtcg 283
>ref|NM_209753.1| Eremothecium gossypii ADR304Wp (ADR304W), mRNA Length = 1968 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gtccgcaaacagcttgtcgt 398 |||||||||||||||||||| Sbjct: 486 gtccgcaaacagcttgtcgt 467
>emb|Z56794.1|HS140B3R H.sapiens CpG island DNA genomic Mse1 fragment, clone 140b3, reverse read cpg140b3.rt1a Length = 224 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tcctcctcctcgctgtcctc 333 |||||||||||||||||||| Sbjct: 71 tcctcctcctcgctgtcctc 90
>gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21 of 83 of the complete sequence Length = 315944 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgtcctcgtcgccgtcga 344 |||||||||||||||||||| Sbjct: 179599 gctgtcctcgtcgccgtcga 179580
>gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 of 74 of the complete sequence Length = 300933 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cctcctcctcgctgtcctcg 334 |||||||||||||||||||| Sbjct: 164603 cctcctcctcgctgtcctcg 164584
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 316 ctcctcctcgctgtcctcgtcgccgtcg 343 ||||||||||| ||||||||| |||||| Sbjct: 15037565 ctcctcctcgccgtcctcgtcaccgtcg 15037538
>gb|U24253.1|HSFPGMS2 Human folylpolyglutamate synthetase (FPGS) gene, exons 5-11, and partial cds Length = 2630 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gtgcctcctcaaacaggagg 193 |||||||||||||||||||| Sbjct: 1694 gtgcctcctcaaacaggagg 1675
>gb|U40865.1|HSFPGS3 Human folylpolyglutamate synthetase gene, exons 9, 10, and 11, complete sequence Length = 1151 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gtgcctcctcaaacaggagg 193 |||||||||||||||||||| Sbjct: 477 gtgcctcctcaaacaggagg 458
>emb|AL009191.1|DMC39E1 Drosophila melanogaster cosmid clone 39E1 Length = 34100 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cctcctcctcgctgtcctcg 334 |||||||||||||||||||| Sbjct: 2812 cctcctcctcgctgtcctcg 2793 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,474,386 Number of Sequences: 3902068 Number of extensions: 4474386 Number of successful extensions: 91300 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90570 Number of HSP's gapped (non-prelim): 730 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
