| Clone Name | rbaet23g10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009041.1| Triticum aestivum clone wdk5c.pk006.c9:fis, full insert mRNA sequence Length = 1355 Score = 180 bits (91), Expect = 2e-42 Identities = 182/207 (87%), Gaps = 4/207 (1%) Strand = Plus / Minus Query: 88 aaggccaacacagagtattccccatttgctacacaaagtgggactcaaacttgcaagggc 147 |||||||||||| ||||||||||||| |||||||||||||||| | || |||| ||||| Sbjct: 1230 aaggccaacacaaagtattccccatt-gctacacaaagtgggattaaagcttgacagggc 1172 Query: 148 ttaaatgtcagaccaacactagcagggacagcaaaagcttttatttctgtagag-gggct 206 || | |||||||||||||||||||||||| || |||||||||||||||||| | ||||| Sbjct: 1171 ttga-tgtcagaccaacactagcagggac-gccaaagcttttatttctgtaaggagggct 1114 Query: 207 cctttgaacggagggatttggcttcggaaaacagctttgcgcgctcgaggagtctcgggg 266 ||| ||| ||||||||||||||| ||| |||||||| ||||||| |||||||| || || Sbjct: 1113 cctacgaatggagggatttggctttggagaacagcttcgcgcgcttgaggagtcccgagg 1054 Query: 267 atcactccaccaccatgctctcggcct 293 |||||| ||||||||||||||||||| Sbjct: 1053 gtcactcgaccaccatgctctcggcct 1027 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 10 ggcaccatgatgctttattgcacactggctgacacatgga 49 ||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1332 ggcaccatgatgctttatttcacactggctgacatatgga 1293
>dbj|D13153.1|WHTCYS1 Triticum aestivum mRNA for O-acetylserine (thiol) lyase Length = 1371 Score = 141 bits (71), Expect = 1e-30 Identities = 177/207 (85%), Gaps = 4/207 (1%) Strand = Plus / Minus Query: 88 aaggccaacacaga-gtattccccatttgctacacaaagtgggactcaaacttgcaaggg 146 |||||||||||| | |||||||||||| |||| ||||||||||| | ||||||| ||| Sbjct: 1227 aaggccaacacaaaagtattccccatt-gctaaacaaagtgggattaaaacttgacagga 1169 Query: 147 cttaaatgtcagaccaacactagcagggacagcaaaagcttttatttctgtagaggggct 206 ||| | |||||||||||||||||||||||| || ||||||||||||||||||| ||||| Sbjct: 1168 cttga-tgtcagaccaacactagcagggac-gccaaagcttttatttctgtaggagggct 1111 Query: 207 cctttgaacggagggatttggcttcggaaaacagctttgcgcgctcgaggagtctcgggg 266 ||| ||| | ||||||||||||| ||| |||| || ||||||| |||||||| || | Sbjct: 1110 cctacgaatgtagggatttggctttggagaacacgttcgcgcgcttgaggagtcccgaga 1051 Query: 267 atcactccaccaccatgctctcggcct 293 |||||| ||||||||||||||||||| Sbjct: 1050 gtcactcgaccaccatgctctcggcct 1024 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 10 ggcaccatgatgctttattgcacactggctgacacatgga 49 |||||||||||| || ||| |||||||||||||| ||||| Sbjct: 1326 ggcaccatgatgtttcatttcacactggctgacatatgga 1287
>ref|XM_711631.1| Candida albicans SC5314 putative protein kinase regulator of (H+)-ATPase (CaO19_3415), mRNA Length = 2439 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 gcaaaagcttttatttctgta 198 ||||||||||||||||||||| Sbjct: 1292 gcaaaagcttttatttctgta 1272
>ref|XM_711571.1| Candida albicans SC5314 putative protein kinase regulator of (H+)-ATPase (CaO19_10918), mRNA Length = 2439 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 gcaaaagcttttatttctgta 198 ||||||||||||||||||||| Sbjct: 1292 gcaaaagcttttatttctgta 1272
>emb|AL033391.1|CAC20C1 C.albicans cosmid Ca20C1 Length = 37968 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 gcaaaagcttttatttctgta 198 ||||||||||||||||||||| Sbjct: 33620 gcaaaagcttttatttctgta 33600
>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence Length = 184603 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gacacatggaattcaaatat 59 |||||||||||||||||||| Sbjct: 59057 gacacatggaattcaaatat 59076
>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057M18 map near E10005S, complete sequence Length = 140920 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 aatcgccagaaggccaacacagag 102 ||||||||||||||||||| |||| Sbjct: 110144 aatcgccagaaggccaacaaagag 110121
>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete sequence Length = 211741 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 acacaaagtgggactcaaac 137 |||||||||||||||||||| Sbjct: 205383 acacaaagtgggactcaaac 205402
>gb|AE017245.1| Mycoplasma synoviae 53, complete genome Length = 799476 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 cagcaaaagcttttatttct 195 |||||||||||||||||||| Sbjct: 112956 cagcaaaagcttttatttct 112975
>gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164941 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ttccccatttgctacacaaa 124 |||||||||||||||||||| Sbjct: 136408 ttccccatttgctacacaaa 136427
>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8, complete sequence Length = 218866 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cagaccaacactagcaggga 175 |||||||||||||||||||| Sbjct: 197879 cagaccaacactagcaggga 197898
>ref|XM_686774.1| PREDICTED: Danio rerio similar to relaxin (LOC563417), mRNA Length = 867 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ggatcactccaccaccatgc 284 |||||||||||||||||||| Sbjct: 380 ggatcactccaccaccatgc 399
>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170356 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ttccccatttgctacacaaa 124 |||||||||||||||||||| Sbjct: 62108 ttccccatttgctacacaaa 62127
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 aatcgccagaaggccaacacagag 102 ||||||||||||||||||| |||| Sbjct: 13752335 aatcgccagaaggccaacaaagag 13752312
>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199439 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 cacatggaattcaaatatac 61 |||||||||||||||||||| Sbjct: 152294 cacatggaattcaaatatac 152275
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 acagcaaaagcttttatttc 194 |||||||||||||||||||| Sbjct: 1523191 acagcaaaagcttttatttc 1523210
>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7, complete sequence Length = 197927 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 cagaccaacactagcaggga 175 |||||||||||||||||||| Sbjct: 64945 cagaccaacactagcaggga 64926
>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete sequence Length = 244140 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ttccccatttgctacacaaa 124 |||||||||||||||||||| Sbjct: 73393 ttccccatttgctacacaaa 73412
>emb|BX530024.6| Zebrafish DNA sequence from clone RP71-39B20, complete sequence Length = 146464 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ggatcactccaccaccatgc 284 |||||||||||||||||||| Sbjct: 66718 ggatcactccaccaccatgc 66737
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 aatcgccagaaggccaacacagag 102 ||||||||||||||||||| |||| Sbjct: 13834333 aatcgccagaaggccaacaaagag 13834310
>emb|AM161139.1| Danio rerio partial mRNA for Relaxin 3c (rlx 3c gene) Length = 552 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ggatcactccaccaccatgc 284 |||||||||||||||||||| Sbjct: 435 ggatcactccaccaccatgc 454
>gb|AY834225.1| Danio rerio relaxin 3c mRNA, complete cds Length = 462 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ggatcactccaccaccatgc 284 |||||||||||||||||||| Sbjct: 342 ggatcactccaccaccatgc 361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,627,041 Number of Sequences: 3902068 Number of extensions: 2627041 Number of successful extensions: 43738 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43660 Number of HSP's gapped (non-prelim): 72 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)