ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet23f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009194.1| Triticum aestivum clone wle1.pk0002.c10:fis, full... 74 4e-10
2emb|CR626934.1| Triticum aestivum 48 0.023
3gb|AF277253.1|AF277253 Australopyrum velutinum isolate H6724 dis... 48 0.023
4gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L... 48 0.023
5gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 46 0.091
6gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 46 0.091
7emb|X65606.1|HVBKIN12G H.vulgare BKIN12 gene for protein kinase 46 0.091
8gb|DQ146421.1| Triticum monococcum strain PI503874 VRN1 (VRN1) g... 46 0.091
9gb|DQ146422.1| Triticum monococcum strain PI326317 VRN1 (VRN1) g... 46 0.091
10gb|DQ146423.1| Triticum monococcum strain PI306540 VRN1 (VRN1) g... 46 0.091
11gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1... 46 0.091
12gb|AF277249.1|AF277249 Taeniatherum caput-medusae isolate H10254... 46 0.091
13gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14... 44 0.36
14gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 44 0.36
15gb|AC099726.6| Mus musculus chromosome 7, clone RP23-342H24, com... 44 0.36
16gb|AC127696.4| Mus musculus BAC clone RP23-459J11 from chromosom... 44 0.36
17gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156... 44 0.36
18gb|AC096541.2| Homo sapiens chromosome 1 clone RP11-330M19, comp... 42 1.4
19gb|AC110085.3| Homo sapiens BAC clone RP11-603P13 from 4, comple... 42 1.4
20gb|AY699070.1| Haemonchus contortus clone G4 putative serine/thr... 40 5.6
21gb|AY539861.1| Human rotavirus B strain WH-1 NSP2 gene, complete... 40 5.6
22gb|AC119266.14| Mus musculus chromosome 13, clone RP24-321G8, co... 40 5.6
23gb|AC153970.4| Mus musculus 10 BAC RP24-116A15 (Roswell Park Can... 40 5.6
24gb|AY238393.1| Human rotavirus B strain Bang373 nonstructural pr... 40 5.6
25gb|AY238383.1| Human rotavirus B strain CAL-1 nonstructural prot... 40 5.6
26emb|AJ867609.1| Human rotavirus B NSP2 gene for nonstructural pr... 40 5.6
27emb|CR769787.7| Zebrafish DNA sequence from clone DKEY-148G19 in... 40 5.6
28emb|CR626933.1| Triticum turgidum 40 5.6
29emb|CR626929.1| Triticum aestivum 40 5.6
30emb|Z78410.1|CEC51E3 Caenorhabditis elegans Cosmid C51E3, comple... 40 5.6
31emb|AL353707.14| Human DNA sequence from clone RP11-553J6 on chr... 40 5.6
32emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in... 40 5.6
33emb|CR589943.13| Zebrafish DNA sequence from clone DKEYP-73C8 in... 40 5.6
34emb|BX005238.8| Zebrafish DNA sequence from clone DKEY-61P9 in l... 40 5.6
35emb|CR450716.5| Zebrafish DNA sequence from clone DKEYP-84G1 in ... 40 5.6
36emb|BX769174.7| Zebrafish DNA sequence from clone DKEY-246O14, c... 40 5.6
37gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, comp... 40 5.6
38gb|AY941792.1| Human rotavirus B strain CAL-6 nonstructural prot... 40 5.6
39gb|AY941791.1| Human rotavirus B strain CAL-34 nonstructural pro... 40 5.6
40gb|AY941789.1| Human rotavirus B strain CAL-16 nonstructural pro... 40 5.6
41gb|AY941779.1| Human rotavirus B strain CAL-41 nonstructural pro... 40 5.6
42gb|AY941778.1| Human rotavirus B strain CAL-14 nonstructural pro... 40 5.6
43gb|AY941777.1| Human rotavirus B strain CAL-28 nonstructural pro... 40 5.6
44gb|AY941776.1| Human rotavirus B strain CAL-17 nonstructural pro... 40 5.6
45emb|BX571849.18| Zebrafish DNA sequence from clone DKEY-185N1 in... 40 5.6
46gb|AF205850.1|AF205850 Human rotavirus B strain CAL-1 segment 8 ... 40 5.6
47gb|AF277252.1|AF277252 Australopyrum pectinatum isolate H6771 di... 40 5.6
48gb|AF277251.1|AF277251 Australopyrum retrofractum isolate H6723 ... 40 5.6
49gb|AY212934.2| Human rotavirus B strain WH1 nonstructural protei... 40 5.6
50dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
51gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (T... 40 5.6
52dbj|AB182943.1| Triticum aestivum Wknox1a gene for KN1 homeobox ... 40 5.6
53gb|AC153912.8| Mus musculus 10 BAC RP23-331E5 (Roswell Park Canc... 40 5.6
54gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR c... 40 5.6
55dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
56emb|BX784032.4| Zebrafish DNA sequence from clone CH211-87N12 in... 40 5.6
57dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
58dbj|AK173567.1| Ciona intestinalis cDNA, clone:ciad016h20, full ... 40 5.6
59gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN... 40 5.6
60gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN... 40 5.6
61dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, ... 40 5.6
62emb|BX649383.4| Zebrafish DNA sequence from clone DKEY-247I12 in... 40 5.6
63emb|BX119915.8| Zebrafish DNA sequence from clone CH211-10J20 in... 40 5.6
64emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 40 5.6
65dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.6
66gb|AY864914.1| Human rotavirus B strain CAL-10 nonstructural pro... 40 5.6
67gb|AY864913.1| Human rotavirus B strain CAL-8 nonstructural prot... 40 5.6
68emb|AL807796.16| Mouse DNA sequence from clone RP23-167I12 on ch... 40 5.6
69gb|AF008243.1|AF008243 Homo sapiens cosmid clone C102H1064 from ... 40 5.6
70emb|AL929578.4| Zebrafish DNA sequence from clone CH211-189L6, c... 40 5.6
71emb|AL731795.11| Mouse DNA sequence from clone RP23-123M13 on ch... 40 5.6
72gb|M91437.1|ROHNONSTRC Human rotavirus non-structural protein mR... 40 5.6
73dbj|AP000160.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 40 5.6
74dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 40 5.6
75dbj|AP001417.2| Homo sapiens genomic DNA, chromosome 21q22.2, LB... 40 5.6 
>gb|BT009194.1| Triticum aestivum clone wle1.pk0002.c10:fis, full insert mRNA
            sequence
          Length = 1291

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 96/112 (85%), Gaps = 4/112 (3%)
 Strand = Plus / Minus

                                                                        
Query: 195  tgtccaacatccaatcttcaaacatttcctgaaaacaaacccgga-gccaagagtttttg 253
            |||||||||||||||| |||||||| || |||||||||||||| | || || |||||| |
Sbjct: 1113 tgtccaacatccaatcctcaaacatatcttgaaaacaaacccgcaggcgaaaagttttcg 1054

                                                                
Query: 254  agacatatccagcggtggcaccagcaa-aggatggccatggcctgccttcac 304
            ||||  |||||||||| ||||||| || ||  ||| ||||||||||||||||
Sbjct: 1053 agac--atccagcggttgcaccagaaagagtgtgggcatggcctgccttcac 1004



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 336 ccatggttgcaacgctgtagcatcagctaccactccctaatccataatccatcggccttg 395
           |||||| |||||||||||| ||||||||| ||| ||||||||  ||| ||||||||||| 
Sbjct: 955 ccatggctgcaacgctgtaacatcagctagcaccccctaatctgtaacccatcggcctta 896

                    
Query: 396 tcatgcatt 404
            ||||||||
Sbjct: 895 gcatgcatt 887



 Score = 46.1 bits (23), Expect = 0.091
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 84   cacaaagtcgttacaaaaggttattccgcgtcaataatcttcaaact 130
            |||||| || |||||||| ||||||||||||  | ||||||||||||
Sbjct: 1195 cacaaactcattacaaaaagttattccgcgttgacaatcttcaaact 1149
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>emb|CR626934.1| Triticum aestivum
          Length = 94398

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 159   ctcttatatttctttacagaggga 182
             ||||||||||||||||||||||||
Sbjct: 70983 ctcttatatttctttacagaggga 71006
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>gb|AF277253.1|AF277253 Australopyrum velutinum isolate H6724 disrupted meiotic cDNA 1
           protein (DMC1) gene, partial cds
          Length = 1062

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 159 ctcttatatttctttacagaggga 182
           ||||||||||||||||||||||||
Sbjct: 857 ctcttatatttctttacagaggga 880



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 159 ctcttatatttctttacagaggga 182
           ||||||||||||||||||||||||
Sbjct: 831 ctcttatatttctttacagaggga 808
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>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and
             LRK19 (Lrk19) genes, complete cds
          Length = 35872

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 159   ctcttatatttctttacagaggga 182
             ||||||||||||||||||||||||
Sbjct: 21711 ctcttatatttctttacagaggga 21734



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 159   ctcttatatttctttacagaggga 182
             ||||||||||| ||||||||||||
Sbjct: 21679 ctcttatatttatttacagaggga 21656
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>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 160  tcttatatttctttacagaggga 182
            |||||||||||||||||||||||
Sbjct: 8854 tcttatatttctttacagaggga 8832
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 160   tcttatatttctttacagaggga 182
             |||||||||||||||||||||||
Sbjct: 61103 tcttatatttctttacagaggga 61125
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>emb|X65606.1|HVBKIN12G H.vulgare BKIN12 gene for protein kinase
          Length = 5574

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 160  tcttatatttctttacagaggga 182
            |||||||||||||||||||||||
Sbjct: 2284 tcttatatttctttacagaggga 2262
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>gb|DQ146421.1| Triticum monococcum strain PI503874 VRN1 (VRN1) gene, complete cds
          Length = 16224

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 159  ctcttatatttctttacagagggaata 185
            ||||||||||||||||| |||||||||
Sbjct: 7068 ctcttatatttctttacggagggaata 7042
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>gb|DQ146422.1| Triticum monococcum strain PI326317 VRN1 (VRN1) gene, complete cds
          Length = 15688

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 159  ctcttatatttctttacagagggaata 185
            ||||||||||||||||| |||||||||
Sbjct: 6529 ctcttatatttctttacggagggaata 6503
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>gb|DQ146423.1| Triticum monococcum strain PI306540 VRN1 (VRN1) gene, complete cds
          Length = 16209

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 159  ctcttatatttctttacagagggaata 185
            ||||||||||||||||| |||||||||
Sbjct: 7051 ctcttatatttctttacggagggaata 7025
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>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 159   ctcttatatttctttacagagggaata 185
             ||||||||||||||||| |||||||||
Sbjct: 73601 ctcttatatttctttacggagggaata 73575
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>gb|AF277249.1|AF277249 Taeniatherum caput-medusae isolate H10254 disrupted meiotic cDNA 1
           protein (DMC1) gene, partial cds
          Length = 1080

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 159 ctcttatatttctttacagaggg 181
           |||||||||||||||||||||||
Sbjct: 860 ctcttatatttctttacagaggg 882



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 ctcttatatttctttacagaggga 182
           ||||||||||||| ||||||||||
Sbjct: 833 ctcttatatttctctacagaggga 810
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>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 159  ctcttatatttctttacagagg 180
            ||||||||||||||||||||||
Sbjct: 3530 ctcttatatttctttacagagg 3551



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    tcttatatttctttacagag 179
              ||||||||||||||||||||
Sbjct: 139594 tcttatatttctttacagag 139575



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   tatttctttacagagggaatacaa 188
             |||||||||||| |||||||||||
Sbjct: 27038 tatttctttacatagggaatacaa 27061
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>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
              sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
              (WM1.12) genes, complete cds; transposons Ophelia2,
              Angela3s, and XJ3, complete sequence; LRR protein WM1.3
              (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
              Jody, Angela, and XJ and Stowaway MITE, complete sequence;
              LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
              genes, complete cds; transposons XJ, XA, Angela, and Fred
              and WM1.11 gene, complete sequence; RPM1-like sequence and
              LRR protein WM1.10 (WM1.10) genes, complete cds; and
              transposon XJ, complete sequence
          Length = 198649

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 159    ctcttatatttctttacagagg 180
              ||||||||||||||||||||||
Sbjct: 117332 ctcttatatttctttacagagg 117311
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>gb|AC099726.6| Mus musculus chromosome 7, clone RP23-342H24, complete sequence
          Length = 217218

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 114    tcaataatcttcaaactgttta 135
              ||||||||||||||||||||||
Sbjct: 163619 tcaataatcttcaaactgttta 163640
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>gb|AC127696.4| Mus musculus BAC clone RP23-459J11 from chromosome 7, complete sequence
          Length = 168580

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 114   tcaataatcttcaaactgttta 135
             ||||||||||||||||||||||
Sbjct: 81433 tcaataatcttcaaactgttta 81454
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>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete
           sequence
          Length = 187012

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 159 ctcttatatttctttacagagg 180
           ||||||||||||||||||||||
Sbjct: 643 ctcttatatttctttacagagg 664
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>gb|AC096541.2| Homo sapiens chromosome 1 clone RP11-330M19, complete sequence
          Length = 200368

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 275    cagcaaaggatggccatggcc 295
              |||||||||||||||||||||
Sbjct: 183601 cagcaaaggatggccatggcc 183621
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>gb|AC110085.3| Homo sapiens BAC clone RP11-603P13 from 4, complete sequence
          Length = 80015

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 115  caataatcttcaaactgttta 135
            |||||||||||||||||||||
Sbjct: 2029 caataatcttcaaactgttta 2049
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>gb|AY699070.1| Haemonchus contortus clone G4 putative serine/threonine kinase (stk)
            gene, exon 1 and partial cds, alternatively spliced
          Length = 5235

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  ttatatttctttacagaggg 181
            ||||||||||||||||||||
Sbjct: 1617 ttatatttctttacagaggg 1598
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>gb|AY539861.1| Human rotavirus B strain WH-1 NSP2 gene, complete cds
          Length = 1007

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 389 aatcttcaaacatttcctga 370
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>gb|AC119266.14| Mus musculus chromosome 13, clone RP24-321G8, complete sequence
          Length = 174035

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 212   tcaaacatttcctgaaaacaaacc 235
             |||||||||||||||| |||||||
Sbjct: 89628 tcaaacatttcctgaagacaaacc 89605
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>gb|AC153970.4| Mus musculus 10 BAC RP24-116A15 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 178124

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   gaccaaattaaatctcagtc 52
            ||||||||||||||||||||
Sbjct: 3071 gaccaaattaaatctcagtc 3090
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>gb|AY238393.1| Human rotavirus B strain Bang373 nonstructural protein (NSP2) gene,
           complete cds
          Length = 1007

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 389 aatcttcaaacatttcctga 370
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>gb|AY238383.1| Human rotavirus B strain CAL-1 nonstructural protein (NSP2) gene,
           complete cds
          Length = 1007

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 389 aatcttcaaacatttcctga 370
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>emb|AJ867609.1| Human rotavirus B NSP2 gene for nonstructural protein 2, strain
           ADRV
          Length = 975

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 368 aatcttcaaacatttcctga 349
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>emb|CR769787.7| Zebrafish DNA sequence from clone DKEY-148G19 in linkage group 1,
              complete sequence
          Length = 142653

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     aattaaatctcagtcagttg 57
              ||||||||||||||||||||
Sbjct: 129382 aattaaatctcagtcagttg 129401
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>emb|CR626933.1| Triticum turgidum
          Length = 25216

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   ctcttatatttctttacagaggga 182
             |||||||||||||||| |||||||
Sbjct: 11730 ctcttatatttctttatagaggga 11753
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>emb|CR626929.1| Triticum aestivum
          Length = 20745

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   ctcttatatttctttacagaggga 182
             |||||||||||||||| |||||||
Sbjct: 14448 ctcttatatttctttatagaggga 14471
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>emb|Z78410.1|CEC51E3 Caenorhabditis elegans Cosmid C51E3, complete sequence
          Length = 32561

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   caaacatttcctgaaaacaa 232
             ||||||||||||||||||||
Sbjct: 14529 caaacatttcctgaaaacaa 14510
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>emb|AL353707.14| Human DNA sequence from clone RP11-553J6 on chromosome 9 Contains a
              ribosomal protein S19 (RPS19) pseudogene, complete sequence
          Length = 125373

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    aaacatttcctgaaaacaaa 233
              ||||||||||||||||||||
Sbjct: 109766 aaacatttcctgaaaacaaa 109747
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>emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in linkage group 23,
             complete sequence
          Length = 110120

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   atcttcaaacatttcctgaaaaca 231
             ||||| ||||||||||||||||||
Sbjct: 76649 atcttaaaacatttcctgaaaaca 76626
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>emb|CR589943.13| Zebrafish DNA sequence from clone DKEYP-73C8 in linkage group 18,
            complete sequence
          Length = 179531

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 208  atcttcaaacatttcctgaaaaca 231
            ||||| ||||||||||||||||||
Sbjct: 6482 atcttaaaacatttcctgaaaaca 6505
to top
>emb|BX005238.8| Zebrafish DNA sequence from clone DKEY-61P9 in linkage group 4 Contains
             three genes for a novel protein similar to vertebrate heat
             shock 70kDa protein 12A (Hspa12a), the gene for a novel
             protein similar to vertebrate guanylate nucleotide binding
             protein family,  the gene for a novel protein containing a
             beta-ketoacyl synthase, N-terminal domain, six novel genes
             and five CpG islands, complete sequence
          Length = 166866

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   atcttcaaacatttcctgaaaaca 231
             ||||| ||||||||||||||||||
Sbjct: 65815 atcttaaaacatttcctgaaaaca 65792



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   atcttcaaacatttcctgaaaaca 231
             ||||| ||||||||||||||||||
Sbjct: 33551 atcttaaaacatttcctgaaaaca 33528
to top
>emb|CR450716.5| Zebrafish DNA sequence from clone DKEYP-84G1 in linkage group 18,
             complete sequence
          Length = 193900

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   atcttcaaacatttcctgaaaaca 231
             ||||| ||||||||||||||||||
Sbjct: 58274 atcttaaaacatttcctgaaaaca 58297
to top
>emb|BX769174.7| Zebrafish DNA sequence from clone DKEY-246O14, complete sequence
          Length = 187545

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 208    atcttcaaacatttcctgaaaaca 231
              ||||| ||||||||||||||||||
Sbjct: 147780 atcttaaaacatttcctgaaaaca 147757
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>gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, complete sequence
          Length = 185700

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    tatatttctttacagaggga 182
              ||||||||||||||||||||
Sbjct: 124489 tatatttctttacagaggga 124470
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>gb|AY941792.1| Human rotavirus B strain CAL-6 nonstructural protein 2 (NSP2) gene,
           partial cds
          Length = 434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 377 aatcttcaaacatttcctga 358
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>gb|AY941791.1| Human rotavirus B strain CAL-34 nonstructural protein 2 (NSP2)
           gene, partial cds
          Length = 434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 377 aatcttcaaacatttcctga 358
to top
>gb|AY941789.1| Human rotavirus B strain CAL-16 nonstructural protein 2 (NSP2)
           gene, partial cds
          Length = 434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 377 aatcttcaaacatttcctga 358
to top
>gb|AY941779.1| Human rotavirus B strain CAL-41 nonstructural protein 2 (NSP2)
           gene, partial cds
          Length = 434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 377 aatcttcaaacatttcctga 358
to top
>gb|AY941778.1| Human rotavirus B strain CAL-14 nonstructural protein 2 (NSP2)
           gene, partial cds
          Length = 434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 377 aatcttcaaacatttcctga 358
to top
>gb|AY941777.1| Human rotavirus B strain CAL-28 nonstructural protein 2 (NSP2)
           gene, partial cds
          Length = 434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 377 aatcttcaaacatttcctga 358
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>gb|AY941776.1| Human rotavirus B strain CAL-17 nonstructural protein 2 (NSP2)
           gene, partial cds
          Length = 434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 377 aatcttcaaacatttcctga 358
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>emb|BX571849.18| Zebrafish DNA sequence from clone DKEY-185N1 in linkage group 2,
             complete sequence
          Length = 128844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   atcttcaaacatttcctgaaaaca 231
             ||||| ||||||||||||||||||
Sbjct: 77919 atcttaaaacatttcctgaaaaca 77942
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>gb|AF205850.1|AF205850 Human rotavirus B strain CAL-1 segment 8 putative nonstructural
           protein NSP2 gene, complete cds
          Length = 979

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 369 aatcttcaaacatttcctga 350
to top
>gb|AF277252.1|AF277252 Australopyrum pectinatum isolate H6771 disrupted meiotic cDNA 1
           protein (DMC1) gene, partial cds
          Length = 1048

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 159 ctcttatatttctttacagaggga 182
           ||||| ||||||||||||||||||
Sbjct: 840 ctcttttatttctttacagaggga 863



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 ctcttatatttctttacagaggga 182
           |||||||||||||||| |||||||
Sbjct: 830 ctcttatatttctttatagaggga 807
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>gb|AF277251.1|AF277251 Australopyrum retrofractum isolate H6723 disrupted meiotic cDNA 1
           protein (DMC1) gene, partial cds
          Length = 1061

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 159 ctcttatatttctttacagaggga 182
           ||||| ||||||||||||||||||
Sbjct: 840 ctcttttatttctttacagaggga 863



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 ctcttatatttctttacagaggga 182
           |||||||||||||||| |||||||
Sbjct: 830 ctcttatatttctttatagaggga 807
to top
>gb|AY212934.2| Human rotavirus B strain WH1 nonstructural protein 2 gene, complete
           cds
          Length = 1007

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 389 aatcttcaaacatttcctga 370
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 286     ggccatggcctgccttcacgttctgatgaaga 317
               ||||||||||||||| || ||||||| |||||
Sbjct: 9261145 ggccatggcctgcctacaagttctgacgaaga 9261176
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>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14)
             genes, complete cds; and unknown gene
          Length = 43606

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   ctcttatatttctttacagaggga 182
             ||||||||||| ||||||||||||
Sbjct: 11086 ctcttatatttatttacagaggga 11109
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>dbj|AB182943.1| Triticum aestivum Wknox1a gene for KN1 homeobox protein, complete cds
          Length = 9755

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  ctcttatatttctttacagaggga 182
            ||||||||||||||||| ||||||
Sbjct: 7995 ctcttatatttctttacggaggga 7972
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>gb|AC153912.8| Mus musculus 10 BAC RP23-331E5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206168

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    gaccaaattaaatctcagtc 52
             ||||||||||||||||||||
Sbjct: 63443 gaccaaattaaatctcagtc 63424
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>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like
             putative defense response protein, and putative alliin
             lyase genes, complete cds; and unknown genes
          Length = 106618

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ctcttatatttctttacaga 178
             ||||||||||||||||||||
Sbjct: 53509 ctcttatatttctttacaga 53528
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>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0662B01
          Length = 155913

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 286    ggccatggcctgccttcacgttctgatgaaga 317
              ||||||||||||||| || ||||||| |||||
Sbjct: 155167 ggccatggcctgcctacaagttctgacgaaga 155198
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>emb|BX784032.4| Zebrafish DNA sequence from clone CH211-87N12 in linkage group 18,
             complete sequence
          Length = 112053

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   atcttcaaacatttcctgaaaaca 231
             ||||| ||||||||||||||||||
Sbjct: 99876 atcttaaaacatttcctgaaaaca 99899
to top
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0676F10
          Length = 142510

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 286   ggccatggcctgccttcacgttctgatgaaga 317
             ||||||||||||||| || ||||||| |||||
Sbjct: 28486 ggccatggcctgcctacaagttctgacgaaga 28517
to top
>dbj|AK173567.1| Ciona intestinalis cDNA, clone:ciad016h20, full insert sequence
          Length = 2361

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 ctcttatatttctttacaga 178
           ||||||||||||||||||||
Sbjct: 71  ctcttatatttctttacaga 90
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>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene,
            complete cds; and Stowaway MITE and gypsy retrotransposon
            Sukkula, complete sequence
          Length = 12464

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  ctcttatatttctttacagaggga 182
            ||||||||||||||||| ||||||
Sbjct: 4973 ctcttatatttctttacggaggga 4950
to top
>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene,
            complete cds; and Stowaway MITE and gypsy retrotransposon
            Sukkula, complete sequence
          Length = 12233

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  ctcttatatttctttacagaggga 182
            ||||||||||||||||| ||||||
Sbjct: 4742 ctcttatatttctttacggaggga 4719
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>dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, map 22, complete
              sequences
          Length = 207747

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 356    catcagctaccactccctaatcca 379
              |||| |||||||||||||||||||
Sbjct: 119393 catctgctaccactccctaatcca 119370
to top
>emb|BX649383.4| Zebrafish DNA sequence from clone DKEY-247I12 in linkage group 1,
             complete sequence
          Length = 189528

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aattaaatctcagtcagttg 57
             ||||||||||||||||||||
Sbjct: 64046 aattaaatctcagtcagttg 64027
to top
>emb|BX119915.8| Zebrafish DNA sequence from clone CH211-10J20 in linkage group 20,
             complete sequence
          Length = 90306

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   atcttcaaacatttcctgaaaaca 231
             ||||| ||||||||||||||||||
Sbjct: 72723 atcttaaaacatttcctgaaaaca 72700
to top
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 209    tcttcaaacatttcctgaaaacaa 232
              |||||||||||||||| |||||||
Sbjct: 995704 tcttcaaacatttcctcaaaacaa 995681
to top
>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 356    catcagctaccactccctaatcca 379
              |||| |||||||||||||||||||
Sbjct: 281104 catctgctaccactccctaatcca 281081
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>gb|AY864914.1| Human rotavirus B strain CAL-10 nonstructural protein 2 (NSP2)
           gene, partial cds
          Length = 446

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 389 aatcttcaaacatttcctga 370
to top
>gb|AY864913.1| Human rotavirus B strain CAL-8 nonstructural protein 2 (NSP2) gene,
           partial cds
          Length = 446

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 389 aatcttcaaacatttcctga 370
to top
>emb|AL807796.16| Mouse DNA sequence from clone RP23-167I12 on chromosome 4, complete
             sequence
          Length = 168268

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   gctctcattaccaccatggt 342
             ||||||||||||||||||||
Sbjct: 93566 gctctcattaccaccatggt 93547
to top
>gb|AF008243.1|AF008243 Homo sapiens cosmid clone C102H1064 from 21q22.2, complete sequence
          Length = 34037

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 356   catcagctaccactccctaatcca 379
             |||| |||||||||||||||||||
Sbjct: 17135 catctgctaccactccctaatcca 17158
to top
>emb|AL929578.4| Zebrafish DNA sequence from clone CH211-189L6, complete sequence
          Length = 142570

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   atcttcaaacatttcctgaaaaca 231
             ||||| ||||||||||||||||||
Sbjct: 32609 atcttaaaacatttcctgaaaaca 32586
to top
>emb|AL731795.11| Mouse DNA sequence from clone RP23-123M13 on chromosome 2, complete
             sequence
          Length = 177282

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tcttatatttctttacagag 179
             ||||||||||||||||||||
Sbjct: 69299 tcttatatttctttacagag 69280
to top
>gb|M91437.1|ROHNONSTRC Human rotavirus non-structural protein mRNA, complete cds
          Length = 1006

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aatcttcaaacatttcctga 226
           ||||||||||||||||||||
Sbjct: 389 aatcttcaaacatttcctga 370
to top
>dbj|AP000160.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 12/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 356   catcagctaccactccctaatcca 379
             |||| |||||||||||||||||||
Sbjct: 28521 catctgctaccactccctaatcca 28498
to top
>dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 9/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 356   catcagctaccactccctaatcca 379
             |||| |||||||||||||||||||
Sbjct: 62917 catctgctaccactccctaatcca 62894
to top
>dbj|AP001417.2| Homo sapiens genomic DNA, chromosome 21q22.2, LB7T-ERG region,
             clone:D40
          Length = 89723

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 356   catcagctaccactccctaatcca 379
             |||| |||||||||||||||||||
Sbjct: 11669 catctgctaccactccctaatcca 11646


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,087,891
Number of Sequences: 3902068
Number of extensions: 4087891
Number of successful extensions: 77757
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77612
Number of HSP's gapped (non-prelim): 144
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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