ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet23f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete se... 86 9e-14
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
3dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
4dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
5dbj|AK105429.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 9e-14
6dbj|AK072859.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 9e-14
7emb|BX641156.1|HSM807177 Homo sapiens mRNA; cDNA DKFZp686D06190 ... 48 0.019
8gb|AC072051.8| Homo sapiens chromosome , clone RP11-79D21, compl... 48 0.019
9ref|XM_493716.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.29
10dbj|AK100206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
11gb|AF165425.5| Homo sapiens chromosome 8 clone GS1-110c1 map q11... 42 1.1
12emb|AL513349.11| Human DNA sequence from clone RP11-566G9 on chr... 42 1.1
13emb|CR860488.1| Pongo pygmaeus mRNA; cDNA DKFZp469C2116 (from cl... 42 1.1
14emb|CR857856.1| Pongo pygmaeus mRNA; cDNA DKFZp469H1429 (from cl... 42 1.1
15emb|CR858057.1| Pongo pygmaeus mRNA; cDNA DKFZp459K1236 (from cl... 42 1.1
16gb|AC159037.2| Pan troglodytes BAC clone CH251-277G20 from chrom... 42 1.1
17gb|AC157498.2| Pan troglodytes BAC clone CH251-412M6 from chromo... 42 1.1
18emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in... 42 1.1
19gb|AC103958.11| Homo sapiens chromosome 8, clone GS1-110C1, comp... 42 1.1
20emb|AM116811.1| Calyptrogyne ghiesbreghtiana plastid rps16 gene,... 42 1.1
21emb|AM116810.1| Pholidostachys pulchra plastid rps16 gene, intro... 42 1.1
22emb|AM116809.1| Welfia regia plastid rps16 gene, intron 1, speci... 42 1.1
23emb|AJ240906.1|GCO240906 Geonoma congesta partial rps16 gene 42 1.1
24emb|AJ240905.1|AMA240905 Asterogyne martiana partial rps16 gene 42 1.1
25emb|AJ240904.1|COC240904 Calyptronoma occidentalis partial rps16... 42 1.1
26emb|AJ238825.1|GUN238825 Geonoma undata chloroplast rps16 gene (... 42 1.1
27emb|AJ238824.1|GST238824 Geonoma stricta chloroplast rps16 gene ... 42 1.1
28emb|AJ238823.1|GPO238823 Geonoma polyandra chloroplast rps16 gen... 42 1.1
29emb|AJ238822.1|GOR238822 Geonoma orbignyana chloroplast rps16 ge... 42 1.1
30emb|AJ238821.1|GMA238821 Geonoma macrostachys chloroplast rps16 ... 42 1.1
31emb|AJ238820.1|GJU238820 Geonoma jussieuana chloroplast rps16 ge... 42 1.1
32emb|AJ238819.1|GDE238819 Geonoma deversa chloroplast rps16 gene ... 42 1.1
33emb|AJ238818.1|GCU238818 Geonoma cuneata chloroplast rps16 gene ... 42 1.1
34emb|AJ238816.1|CGH238816 Calyptrogyne ghiesbreghtiana chloroplas... 42 1.1
35emb|AJ238815.1|WRE238815 Welfia regia chloroplast rps16 gene (pa... 42 1.1
36emb|AJ238814.1|PDA238814 Pholidostachys dactyloides chloroplast ... 42 1.1
37emb|AJ238813.1|PPU238813 Pholidostachys pulchra chloroplast rps1... 42 1.1
38gb|AC113485.19| Mus musculus chromosome 19, clone RP23-346D12, c... 40 4.5
39gb|BC015518.2| Homo sapiens aspartate beta-hydroxylase, mRNA (cD... 40 4.5
40gb|BC025236.1| Homo sapiens aspartate beta-hydroxylase, mRNA (cD... 40 4.5
41emb|AL357515.26| Human DNA sequence from clone RP11-397G5 on chr... 40 4.5
42emb|BX950874.9| Zebrafish DNA sequence from clone CH211-128I1, c... 40 4.5
43ref|NM_004318.2| Homo sapiens aspartate beta-hydroxylase (ASPH),... 40 4.5
44ref|NM_032468.2| Homo sapiens aspartate beta-hydroxylase (ASPH),... 40 4.5
45ref|NM_032466.1| Homo sapiens aspartate beta-hydroxylase (ASPH),... 40 4.5
46gb|AC090465.15| Homo sapiens chromosome 18, clone RP11-527C6, co... 40 4.5
47emb|CR626894.1| Human DNA sequence from clone XX-NCIH2171_3M21, ... 40 4.5
48gb|AC018522.7| Homo sapiens chromosome 18, clone RP11-7N19, comp... 40 4.5
49ref|XM_680928.1| PREDICTED: Danio rerio similar to cold autoinfl... 40 4.5
50ref|XM_692640.1| PREDICTED: Danio rerio similar to NOD3 protein ... 40 4.5
51ref|XM_692007.1| PREDICTED: Danio rerio similar to NOD3 protein ... 40 4.5
52ref|XM_680733.1| PREDICTED: Danio rerio similar to NOD3 protein ... 40 4.5
53gb|AC067881.5| Homo sapiens chromosome 8, clone RP11-687K23, com... 40 4.5
54gb|S83325.1| aspartyl(asparaginyl)beta-hydroxylase [human, hepat... 40 4.5
55gb|AC158130.7| Mus musculus chromosome 19, clone RP24-360F11, co... 40 4.5
56gb|AC004129.2| Homo sapiens BAC clone CTB-136N17 from 7, complet... 40 4.5
57gb|AC012595.10| Homo sapiens BAC clone RP11-539J22 from 2, compl... 40 4.5
58gb|AF306765.1|AF306765 Homo sapiens junctate mRNA, complete cds 40 4.5
59gb|AF289489.1|AF289489 Homo sapiens aspartyl beta-hydroxylase 2.... 40 4.5
60gb|AC108059.6| Homo sapiens BAC clone RP11-398G9 from 2, complet... 40 4.5
61gb|AC008063.2| Homo sapiens BAC clone RP11-178A14 from 2, comple... 40 4.5
62emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 i... 40 4.5
63gb|AY528560.1| Spiroplasma kunkelii strain CR2-3x plasmid pSKU14... 40 4.5
64gb|U03109.1|HSU03109 Human aspartyl beta-hydroxylase mRNA, compl... 40 4.5
65emb|AL731711.11| Mouse DNA sequence from clone RP23-55A17 on chr... 40 4.5
66gb|M18818.1|RABBGLOB Rabbit beta-like globin gene cluster encodi... 40 4.5 
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence
          Length = 136866

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 88/101 (87%), Gaps = 4/101 (3%)
 Strand = Plus / Plus

                                                                         
Query: 1     gaatcaacaaactgaatcatagtcaacttcttttaccagacagaaagtaaacatctagat 60
             |||| ||||||||||||||||||||||||||||||| |||    ||||||||||||||||
Sbjct: 47360 gaataaacaaactgaatcatagtcaacttcttttacaaga---gaagtaaacatctagat 47416

                                                      
Query: 61    acaacaatagctacagagatacaatgaagaacagctcatct 101
             |||||| | |||||  || ||||||  ||||||||||||||
Sbjct: 47417 acaacatttgctacgaaggtacaat-cagaacagctcatct 47456



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 215   aaaacaaaagggtatgggctagataccagtctat 248
             |||| |||||| ||||| ||||||||||||||||
Sbjct: 47567 aaaagaaaaggatatggactagataccagtctat 47600
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 88/101 (87%), Gaps = 4/101 (3%)
 Strand = Plus / Plus

                                                                           
Query: 1       gaatcaacaaactgaatcatagtcaacttcttttaccagacagaaagtaaacatctagat 60
               |||| ||||||||||||||||||||||||||||||| |||    ||||||||||||||||
Sbjct: 1727145 gaataaacaaactgaatcatagtcaacttcttttacaaga---gaagtaaacatctagat 1727201

                                                        
Query: 61      acaacaatagctacagagatacaatgaagaacagctcatct 101
               |||||| | |||||  || ||||||  ||||||||||||||
Sbjct: 1727202 acaacatttgctacgaaggtacaat-cagaacagctcatct 1727241



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 215     aaaacaaaagggtatgggctagataccagtctat 248
               |||| |||||| ||||| ||||||||||||||||
Sbjct: 1727352 aaaagaaaaggatatggactagataccagtctat 1727385
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>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0493C11
          Length = 143113

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 88/101 (87%), Gaps = 4/101 (3%)
 Strand = Plus / Plus

                                                                          
Query: 1      gaatcaacaaactgaatcatagtcaacttcttttaccagacagaaagtaaacatctagat 60
              |||| ||||||||||||||||||||||||||||||| |||    ||||||||||||||||
Sbjct: 130316 gaataaacaaactgaatcatagtcaacttcttttacaaga---gaagtaaacatctagat 130372

                                                       
Query: 61     acaacaatagctacagagatacaatgaagaacagctcatct 101
              |||||| | |||||  || ||||||  ||||||||||||||
Sbjct: 130373 acaacatttgctacgaaggtacaat-cagaacagctcatct 130412



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 215    aaaacaaaagggtatgggctagataccagtctat 248
              |||| |||||| ||||| ||||||||||||||||
Sbjct: 130523 aaaagaaaaggatatggactagataccagtctat 130556
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>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0679C08
          Length = 156266

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 88/101 (87%), Gaps = 4/101 (3%)
 Strand = Plus / Plus

                                                                         
Query: 1     gaatcaacaaactgaatcatagtcaacttcttttaccagacagaaagtaaacatctagat 60
             |||| ||||||||||||||||||||||||||||||| |||    ||||||||||||||||
Sbjct: 52294 gaataaacaaactgaatcatagtcaacttcttttacaaga---gaagtaaacatctagat 52350

                                                      
Query: 61    acaacaatagctacagagatacaatgaagaacagctcatct 101
             |||||| | |||||  || ||||||  ||||||||||||||
Sbjct: 52351 acaacatttgctacgaaggtacaat-cagaacagctcatct 52390



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 215   aaaacaaaagggtatgggctagataccagtctat 248
             |||| |||||| ||||| ||||||||||||||||
Sbjct: 52501 aaaagaaaaggatatggactagataccagtctat 52534
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>dbj|AK105429.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E04, full
            insert sequence
          Length = 1767

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 88/101 (87%), Gaps = 4/101 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaatcaacaaactgaatcatagtcaacttcttttaccagacagaaagtaaacatctagat 60
            |||| ||||||||||||||||||||||||||||||| |||    ||||||||||||||||
Sbjct: 1750 gaataaacaaactgaatcatagtcaacttcttttacaaga---gaagtaaacatctagat 1694

                                                     
Query: 61   acaacaatagctacagagatacaatgaagaacagctcatct 101
            |||||| | |||||  || ||||||  ||||||||||||||
Sbjct: 1693 acaacatttgctacgaaggtacaat-cagaacagctcatct 1654



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 215  aaaacaaaagggtatgggctagataccagtctat 248
            |||| |||||| ||||| ||||||||||||||||
Sbjct: 1543 aaaagaaaaggatatggactagataccagtctat 1510
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>dbj|AK072859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143I01, full
            insert sequence
          Length = 1845

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 88/101 (87%), Gaps = 4/101 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaatcaacaaactgaatcatagtcaacttcttttaccagacagaaagtaaacatctagat 60
            |||| ||||||||||||||||||||||||||||||| |||    ||||||||||||||||
Sbjct: 1845 gaataaacaaactgaatcatagtcaacttcttttacaaga---gaagtaaacatctagat 1789

                                                     
Query: 61   acaacaatagctacagagatacaatgaagaacagctcatct 101
            |||||| | |||||  || ||||||  ||||||||||||||
Sbjct: 1788 acaacatttgctacgaaggtacaat-cagaacagctcatct 1749



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 215  aaaacaaaagggtatgggctagataccagtctat 248
            |||| |||||| ||||| ||||||||||||||||
Sbjct: 1638 aaaagaaaaggatatggactagataccagtctat 1605
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>emb|BX641156.1|HSM807177 Homo sapiens mRNA; cDNA DKFZp686D06190 (from clone DKFZp686D06190)
          Length = 3936

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 56   tagatacaacaatagctacagagataca 83
            |||||| |||||||||||||||||||||
Sbjct: 2825 tagataaaacaatagctacagagataca 2798
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>gb|AC072051.8| Homo sapiens chromosome , clone RP11-79D21, complete sequence
          Length = 157284

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 56     tagatacaacaatagctacagagataca 83
              |||||| |||||||||||||||||||||
Sbjct: 126158 tagataaaacaatagctacagagataca 126185
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>ref|XM_493716.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1712

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 215  aaaacaaaagggtatgggctagataccagtctat 248
            |||| |||||| ||||| ||||||||||||||||
Sbjct: 1618 aaaagaaaaggatatggactagataccagtctat 1585
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>dbj|AK100206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041H11, full
            insert sequence
          Length = 1712

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 215  aaaacaaaagggtatgggctagataccagtctat 248
            |||| |||||| ||||| ||||||||||||||||
Sbjct: 1618 aaaagaaaaggatatggactagataccagtctat 1585
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>gb|AF165425.5| Homo sapiens chromosome 8 clone GS1-110c1 map q11.21, complete sequence
          Length = 108065

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   aaacaaaaaacaaaagggtat 229
             |||||||||||||||||||||
Sbjct: 29577 aaacaaaaaacaaaagggtat 29557
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>emb|AL513349.11| Human DNA sequence from clone RP11-566G9 on chromosome 1 Contains part
             of the NEGR1 gene for neuronal growth regulator 1,
             complete sequence
          Length = 149587

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    acaatgaagaacagctcatct 101
             |||||||||||||||||||||
Sbjct: 53837 acaatgaagaacagctcatct 53817
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>emb|CR860488.1| Pongo pygmaeus mRNA; cDNA DKFZp469C2116 (from clone DKFZp469C2116)
          Length = 4560

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 265  aagcatttttcctgtggaagcacaa 289
            |||||||||||||||||||| ||||
Sbjct: 1033 aagcatttttcctgtggaagaacaa 1057
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>emb|CR857856.1| Pongo pygmaeus mRNA; cDNA DKFZp469H1429 (from clone DKFZp469H1429)
          Length = 2930

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 265  aagcatttttcctgtggaagcacaa 289
            |||||||||||||||||||| ||||
Sbjct: 1132 aagcatttttcctgtggaagaacaa 1156
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>emb|CR858057.1| Pongo pygmaeus mRNA; cDNA DKFZp459K1236 (from clone DKFZp459K1236)
          Length = 2903

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 265  aagcatttttcctgtggaagcacaa 289
            |||||||||||||||||||| ||||
Sbjct: 1101 aagcatttttcctgtggaagaacaa 1125
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>gb|AC159037.2| Pan troglodytes BAC clone CH251-277G20 from chromosome unknown,
             complete sequence
          Length = 171362

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    aacaatagctacagagataca 83
             |||||||||||||||||||||
Sbjct: 53029 aacaatagctacagagataca 53009
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>gb|AC157498.2| Pan troglodytes BAC clone CH251-412M6 from chromosome unknown, complete
             sequence
          Length = 159994

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    aacaatagctacagagataca 83
             |||||||||||||||||||||
Sbjct: 74503 aacaatagctacagagataca 74523
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>emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in linkage group 11,
              complete sequence
          Length = 197146

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    aactttaaacaaaaaacaaaa 223
              |||||||||||||||||||||
Sbjct: 118611 aactttaaacaaaaaacaaaa 118631
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>gb|AC103958.11| Homo sapiens chromosome 8, clone GS1-110C1, complete sequence
          Length = 107642

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   aaacaaaaaacaaaagggtat 229
             |||||||||||||||||||||
Sbjct: 29578 aaacaaaaaacaaaagggtat 29558
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>emb|AM116811.1| Calyptrogyne ghiesbreghtiana plastid rps16 gene, intron 1, specimen
           voucher Knudsen & Asmussen 627 (AAU)
          Length = 817

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 361 aacaaaaaacaaaagggtatg 381
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>emb|AM116810.1| Pholidostachys pulchra plastid rps16 gene, intron 1, specimen
           voucher Knudsen & Asmussen 613 (AAU)
          Length = 811

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 355 aacaaaaaacaaaagggtatg 375
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>emb|AM116809.1| Welfia regia plastid rps16 gene, intron 1, specimen voucher Knudsen
           & Asmussen 607 (AAU)
          Length = 816

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 360 aacaaaaaacaaaagggtatg 380
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>emb|AJ240906.1|GCO240906 Geonoma congesta partial rps16 gene
          Length = 878

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 392 aacaaaaaacaaaagggtatg 412
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>emb|AJ240905.1|AMA240905 Asterogyne martiana partial rps16 gene
          Length = 868

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 392 aacaaaaaacaaaagggtatg 412
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>emb|AJ240904.1|COC240904 Calyptronoma occidentalis partial rps16 gene
          Length = 867

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 391 aacaaaaaacaaaagggtatg 411
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>emb|AJ238825.1|GUN238825 Geonoma undata chloroplast rps16 gene (partial), intron
          Length = 870

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 392 aacaaaaaacaaaagggtatg 412
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>emb|AJ238824.1|GST238824 Geonoma stricta chloroplast rps16 gene (partial), intron
          Length = 870

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 390 aacaaaaaacaaaagggtatg 410
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>emb|AJ238823.1|GPO238823 Geonoma polyandra chloroplast rps16 gene (partial), intron
          Length = 880

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 392 aacaaaaaacaaaagggtatg 412
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>emb|AJ238822.1|GOR238822 Geonoma orbignyana chloroplast rps16 gene (partial), intron
          Length = 866

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 390 aacaaaaaacaaaagggtatg 410
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>emb|AJ238821.1|GMA238821 Geonoma macrostachys chloroplast rps16 gene (partial), intron
          Length = 875

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 389 aacaaaaaacaaaagggtatg 409
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>emb|AJ238820.1|GJU238820 Geonoma jussieuana chloroplast rps16 gene (partial), intron
          Length = 872

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 393 aacaaaaaacaaaagggtatg 413
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>emb|AJ238819.1|GDE238819 Geonoma deversa chloroplast rps16 gene (partial), intron
          Length = 867

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 391 aacaaaaaacaaaagggtatg 411
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>emb|AJ238818.1|GCU238818 Geonoma cuneata chloroplast rps16 gene (partial), intron
          Length = 870

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 393 aacaaaaaacaaaagggtatg 413
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>emb|AJ238816.1|CGH238816 Calyptrogyne ghiesbreghtiana chloroplast rps16 gene (partial),
           intron
          Length = 867

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 392 aacaaaaaacaaaagggtatg 412
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>emb|AJ238815.1|WRE238815 Welfia regia chloroplast rps16 gene (partial), intron
          Length = 864

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 386 aacaaaaaacaaaagggtatg 406
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>emb|AJ238814.1|PDA238814 Pholidostachys dactyloides chloroplast rps16 gene (partial), intron
          Length = 863

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 386 aacaaaaaacaaaagggtatg 406
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>emb|AJ238813.1|PPU238813 Pholidostachys pulchra chloroplast rps16 gene (partial), intron
          Length = 864

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 aacaaaaaacaaaagggtatg 230
           |||||||||||||||||||||
Sbjct: 386 aacaaaaaacaaaagggtatg 406
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>gb|AC113485.19| Mus musculus chromosome 19, clone RP23-346D12, complete sequence
          Length = 190974

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   actttaaacaaaaaacaaaa 223
             ||||||||||||||||||||
Sbjct: 77451 actttaaacaaaaaacaaaa 77470
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>gb|BC015518.2| Homo sapiens aspartate beta-hydroxylase, mRNA (cDNA clone
            IMAGE:3887962), partial cds
          Length = 1080

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  aagcatttttcctgtggaag 284
            ||||||||||||||||||||
Sbjct: 1025 aagcatttttcctgtggaag 1044
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>gb|BC025236.1| Homo sapiens aspartate beta-hydroxylase, mRNA (cDNA clone
           IMAGE:5090911), complete cds
          Length = 2761

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aagcatttttcctgtggaag 284
           ||||||||||||||||||||
Sbjct: 962 aagcatttttcctgtggaag 981
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>emb|AL357515.26| Human DNA sequence from clone RP11-397G5 on chromosome 6 Contains the
             3' end of the AMD1 gene for S-adenosylmethionine
             decarboxylase 1, two novel genes, a glutathione
             S-transferase M2 (muscle) (GSTM2) pseudogene and three CpG
             islands, complete sequence
          Length = 190440

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tttaaacaaaaaacaaaagg 225
             ||||||||||||||||||||
Sbjct: 60326 tttaaacaaaaaacaaaagg 60345
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>emb|BX950874.9| Zebrafish DNA sequence from clone CH211-128I1, complete sequence
          Length = 177114

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aaacaaaaaacaaaagggta 228
             ||||||||||||||||||||
Sbjct: 28381 aaacaaaaaacaaaagggta 28362
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>ref|NM_004318.2| Homo sapiens aspartate beta-hydroxylase (ASPH), transcript variant
           1, mRNA
          Length = 2452

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aagcatttttcctgtggaag 284
           ||||||||||||||||||||
Sbjct: 971 aagcatttttcctgtggaag 990
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>ref|NM_032468.2| Homo sapiens aspartate beta-hydroxylase (ASPH), transcript variant
           2, mRNA
          Length = 2773

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aagcatttttcctgtggaag 284
           ||||||||||||||||||||
Sbjct: 970 aagcatttttcctgtggaag 989
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>ref|NM_032466.1| Homo sapiens aspartate beta-hydroxylase (ASPH), transcript variant
           3, mRNA
          Length = 2680

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aagcatttttcctgtggaag 284
           ||||||||||||||||||||
Sbjct: 905 aagcatttttcctgtggaag 924
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>gb|AC090465.15| Homo sapiens chromosome 18, clone RP11-527C6, complete sequence
          Length = 174535

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   tgtgtagcactggcagggaa 318
             ||||||||||||||||||||
Sbjct: 19177 tgtgtagcactggcagggaa 19158
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>emb|CR626894.1| Human DNA sequence from clone XX-NCIH2171_3M21, complete sequence
          Length = 126392

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   aagcatttttcctgtggaag 284
             ||||||||||||||||||||
Sbjct: 29810 aagcatttttcctgtggaag 29791
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>gb|AC018522.7| Homo sapiens chromosome 18, clone RP11-7N19, complete sequence
          Length = 169578

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    tgtgtagcactggcagggaa 318
              ||||||||||||||||||||
Sbjct: 123880 tgtgtagcactggcagggaa 123861
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>ref|XM_680928.1| PREDICTED: Danio rerio similar to cold autoinflammatory syndrome 1
           homolog (LOC557805), mRNA
          Length = 2670

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  aatgaagaacagctcatctt 102
           ||||||||||||||||||||
Sbjct: 252 aatgaagaacagctcatctt 233
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>ref|XM_692640.1| PREDICTED: Danio rerio similar to NOD3 protein (LOC569265), mRNA
          Length = 2868

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  aatgaagaacagctcatctt 102
           ||||||||||||||||||||
Sbjct: 219 aatgaagaacagctcatctt 200
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>ref|XM_692007.1| PREDICTED: Danio rerio similar to NOD3 protein (LOC568664), mRNA
          Length = 8079

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   aatgaagaacagctcatctt 102
            ||||||||||||||||||||
Sbjct: 3789 aatgaagaacagctcatctt 3770
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>ref|XM_680733.1| PREDICTED: Danio rerio similar to NOD3 protein (LOC557639), mRNA
          Length = 3180

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  aatgaagaacagctcatctt 102
           ||||||||||||||||||||
Sbjct: 336 aatgaagaacagctcatctt 317
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>gb|AC067881.5| Homo sapiens chromosome 8, clone RP11-687K23, complete sequence
          Length = 186676

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   aagcatttttcctgtggaag 284
             ||||||||||||||||||||
Sbjct: 71583 aagcatttttcctgtggaag 71564
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>gb|S83325.1| aspartyl(asparaginyl)beta-hydroxylase [human, hepatoblastoma cell
           line HepG2, mRNA Partial, 2324 nt]
          Length = 2324

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aagcatttttcctgtggaag 284
           ||||||||||||||||||||
Sbjct: 905 aagcatttttcctgtggaag 924
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>gb|AC158130.7| Mus musculus chromosome 19, clone RP24-360F11, complete sequence
          Length = 206879

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   actttaaacaaaaaacaaaa 223
             ||||||||||||||||||||
Sbjct: 59857 actttaaacaaaaaacaaaa 59838
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>gb|AC004129.2| Homo sapiens BAC clone CTB-136N17 from 7, complete sequence
          Length = 162701

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   agctaactttaaacaaaaaa 218
             ||||||||||||||||||||
Sbjct: 78288 agctaactttaaacaaaaaa 78269
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>gb|AC012595.10| Homo sapiens BAC clone RP11-539J22 from 2, complete sequence
          Length = 170686

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   cagggaaaaggccaccaaat 331
             ||||||||||||||||||||
Sbjct: 32274 cagggaaaaggccaccaaat 32255
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>gb|AF306765.1|AF306765 Homo sapiens junctate mRNA, complete cds
          Length = 2280

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aagcatttttcctgtggaag 284
           ||||||||||||||||||||
Sbjct: 934 aagcatttttcctgtggaag 953
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>gb|AF289489.1|AF289489 Homo sapiens aspartyl beta-hydroxylase 2.8 kb transcript mRNA,
           complete cds; alternatively spliced
          Length = 2680

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aagcatttttcctgtggaag 284
           ||||||||||||||||||||
Sbjct: 905 aagcatttttcctgtggaag 924
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>gb|AC108059.6| Homo sapiens BAC clone RP11-398G9 from 2, complete sequence
          Length = 124950

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   aaaaggccaccaaattttgg 336
             ||||||||||||||||||||
Sbjct: 95027 aaaaggccaccaaattttgg 95008
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>gb|AC008063.2| Homo sapiens BAC clone RP11-178A14 from 2, complete sequence
          Length = 138740

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    agctaactttaaacaaaaaa 218
              ||||||||||||||||||||
Sbjct: 126393 agctaactttaaacaaaaaa 126374
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>emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 in linkage group 23,
              complete sequence
          Length = 156598

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    aaacaaaaaacaaaagggta 228
              ||||||||||||||||||||
Sbjct: 142599 aaacaaaaaacaaaagggta 142580
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>gb|AY528560.1| Spiroplasma kunkelii strain CR2-3x plasmid pSKU146, complete
           sequence
          Length = 14615

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 taactttaaacaaaaaacaa 221
           ||||||||||||||||||||
Sbjct: 953 taactttaaacaaaaaacaa 972
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>gb|U03109.1|HSU03109 Human aspartyl beta-hydroxylase mRNA, complete cds
          Length = 2449

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 aagcatttttcctgtggaag 284
           ||||||||||||||||||||
Sbjct: 971 aagcatttttcctgtggaag 990
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>emb|AL731711.11| Mouse DNA sequence from clone RP23-55A17 on chromosome X, complete
              sequence
          Length = 209999

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    gctaactttaaacaaaaaac 219
              ||||||||||||||||||||
Sbjct: 126586 gctaactttaaacaaaaaac 126605
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>gb|M18818.1|RABBGLOB Rabbit beta-like globin gene cluster encoding the epsilon, gamma, delta
             (pseudogene) and beta globin polypeptides, complete cds
          Length = 44594

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   taagctaactttaaacaaaa 216
             ||||||||||||||||||||
Sbjct: 20966 taagctaactttaaacaaaa 20985


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,299,950
Number of Sequences: 3902068
Number of extensions: 4299950
Number of successful extensions: 219485
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 219290
Number of HSP's gapped (non-prelim): 183
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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