ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet23e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 4e-04
2gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare str... 54 4e-04
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
5dbj|AK121020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
6gb|AY821714.1| Peridictyon sanctum beta amylase gene, partial cd... 52 0.002
7gb|AY137517.1| Hordeum vulgare subsp. vulgare hypersensitive-ind... 48 0.024
8emb|CR626933.1| Triticum turgidum 48 0.024
9emb|CR626929.1| Triticum aestivum 48 0.024
10gb|M63224.1|WHTGERMINA Wheat germin 9f-3.8 gene, complete cds 48 0.024
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
13emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041... 42 1.5
14gb|L34210.1|BLYCHI26A Hordeum vulgare chitinase (CHI26) gene, co... 42 1.5
15gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 5.9
16gb|AC149071.3| Xenopus tropicalis BAC clone ISB10250N9 containin... 40 5.9
17gb|AC140336.2| Mus musculus BAC clone RP24-266F17 from chromosom... 40 5.9
18gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome... 40 5.9
19gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome... 40 5.9
20ref|XM_383886.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 5.9
21gb|AC107024.5| Homo sapiens 3 BAC RP11-447J13 (Roswell Park Canc... 40 5.9
22ref|XM_815392.1| Trypanosoma cruzi strain CL Brener mucin-associ... 40 5.9
23ref|XM_649330.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.9
24gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, com... 40 5.9
25ref|NG_005518.1| Homo sapiens zinc finger protein 705C pseudogen... 40 5.9
26gb|AC087203.12| Homo sapiens chromosome 8, clone RP11-351I21, co... 40 5.9
27gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, com... 40 5.9
28gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC cl... 40 5.9
29emb|CR318631.5| Zebrafish DNA sequence from clone DKEY-207D5 in ... 40 5.9
30emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 i... 40 5.9
31emb|BX000347.7| Zebrafish DNA sequence from clone DKEY-66C4 in l... 40 5.9
32gb|AC157487.1| Genomic sequence for Zea mays clone ZMMBBb0614J24... 40 5.9
33gb|AC005670.1|AC005670 Homo sapiens chromosome 17, clone hRPK.63... 40 5.9
34dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                  
Query: 331     aacatgtctgcggaacaaattattggccatagctt 365
               |||| ||||||||||||||||||||||||| ||||
Sbjct: 5316807 aacaggtctgcggaacaaattattggccattgctt 5316841
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>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 331   aacatgtctgcggaacaaattattggccatagctt 365
             |||| ||||||||||||||||||||||||| ||||
Sbjct: 22975 aacaggtctgcggaacaaattattggccattgctt 23009
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                  
Query: 331     aacatgtctgcggaacaaattattggccatagctt 365
               |||| ||||||||||||||||||||||||| ||||
Sbjct: 5316022 aacaggtctgcggaacaaattattggccattgctt 5316056
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>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 331   aacatgtctgcggaacaaattattggccatagctt 365
             |||| ||||||||||||||||||||||||| ||||
Sbjct: 37956 aacaggtctgcggaacaaattattggccattgctt 37990
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>dbj|AK121020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049E21, full
            insert sequence
          Length = 1265

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 331  aacatgtctgcggaacaaattattggccatagctt 365
            |||| ||||||||||||||||||||||||| ||||
Sbjct: 1052 aacaggtctgcggaacaaattattggccattgctt 1018
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>gb|AY821714.1| Peridictyon sanctum beta amylase gene, partial cds; and Stowaway
            MITE, complete sequence
          Length = 1475

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 11   gtcgtggttttagttcaaatttgagctaaa 40
            |||||||||||||||||||||||| |||||
Sbjct: 1222 gtcgtggttttagttcaaatttgaactaaa 1251



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 15   tggttttagttcaaatttgagctaaa 40
            |||||||||||||||||||| |||||
Sbjct: 1255 tggttttagttcaaatttgaactaaa 1230
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>gb|AY137517.1| Hordeum vulgare subsp. vulgare hypersensitive-induced reaction
            protein 3 (hir3) gene, complete cds
          Length = 6537

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 1    caaaatagctgtcgtggttttagttcaaatttgagctaaa 40
            |||||||  ||||||||||||||| ||||||||| |||||
Sbjct: 5837 caaaataagtgtcgtggttttagtacaaatttgaactaaa 5876



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 1    caaaatagctgtcgtggttttagttcaaatttg 33
            |||||||  |||| |||||||||||||||||||
Sbjct: 5894 caaaataagtgtcatggttttagttcaaatttg 5862
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>emb|CR626933.1| Triticum turgidum
          Length = 25216

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 1     caaaatagctgtcgtggttttagttcaaatttgagctaaa 40
             |||||||  |||| |||||||||||||||||||| |||||
Sbjct: 11820 caaaataagtgtcttggttttagttcaaatttgaactaaa 11859



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 16    ggttttagttcaaatttgagctaaa 40
             ||||||||||||||||||| |||||
Sbjct: 11862 ggttttagttcaaatttgaactaaa 11838
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>emb|CR626929.1| Triticum aestivum
          Length = 20745

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 1     caaaatagctgtcgtggttttagttcaaatttgagctaaa 40
             |||||||  |||| |||||||||||||||||||| |||||
Sbjct: 14538 caaaataagtgtcttggttttagttcaaatttgaactaaa 14577



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 16    ggttttagttcaaatttgagctaaa 40
             ||||||||||||||||||| |||||
Sbjct: 14580 ggttttagttcaaatttgaactaaa 14556
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>gb|M63224.1|WHTGERMINA Wheat germin 9f-3.8 gene, complete cds
          Length = 3761

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 11   gtcgtggttttagttcaaatttga 34
            ||||||||||||||||||||||||
Sbjct: 2403 gtcgtggttttagttcaaatttga 2380
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 45      tattttggaacgcaaggagtatata 69
               |||||||||||| ||||||||||||
Sbjct: 3741160 tattttggaacgaaaggagtatata 3741136
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 45      tattttggaacgcaaggagtatata 69
               |||||||||||| ||||||||||||
Sbjct: 3741134 tattttggaacgaaaggagtatata 3741110
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>emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 104421

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 45   tattttggaacgcaaggagtatata 69
            |||||||||||| ||||||||||||
Sbjct: 8513 tattttggaacgaaaggagtatata 8537
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>gb|L34210.1|BLYCHI26A Hordeum vulgare chitinase (CHI26) gene, complete cds
          Length = 3169

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 14   gtggttttagttcaaatttga 34
            |||||||||||||||||||||
Sbjct: 2779 gtggttttagttcaaatttga 2759
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 280     ggcctatcggatcctgccca 299
               ||||||||||||||||||||
Sbjct: 2184527 ggcctatcggatcctgccca 2184546
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>gb|AC149071.3| Xenopus tropicalis BAC clone ISB10250N9 containing the Irx4 gene,
            complete cds, complete sequence
          Length = 84437

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 358  catagcttcacaaaaaataa 377
            ||||||||||||||||||||
Sbjct: 7132 catagcttcacaaaaaataa 7151
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>gb|AC140336.2| Mus musculus BAC clone RP24-266F17 from chromosome 18, complete
             sequence
          Length = 186205

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 191   ctactcggaactcacagtagaaag 214
             |||||| |||||||||||||||||
Sbjct: 53712 ctactctgaactcacagtagaaag 53689
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>gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome 18, complete sequence
          Length = 152588

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   tggataaaatcccaggtgaa 279
             ||||||||||||||||||||
Sbjct: 13293 tggataaaatcccaggtgaa 13274
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>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence
          Length = 181095

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   tggataaaatcccaggtgaa 279
             ||||||||||||||||||||
Sbjct: 38654 tggataaaatcccaggtgaa 38673
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>ref|XM_383886.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03710.1)
            partial mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 349  attattggccatagcttcac 368
            ||||||||||||||||||||
Sbjct: 1272 attattggccatagcttcac 1253
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>gb|AC107024.5| Homo sapiens 3 BAC RP11-447J13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 180216

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 346  caaattattggccatagctt 365
            ||||||||||||||||||||
Sbjct: 6786 caaattattggccatagctt 6805
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>ref|XM_815392.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053508165.170) partial mRNA
          Length = 1233

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 127 aaatcaatcaacaccgcatgaaaaatca 154
           ||||||||||| |||||||||| |||||
Sbjct: 333 aaatcaatcaataccgcatgaacaatca 360
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>ref|XM_649330.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (54.t00042)
            partial mRNA
          Length = 4962

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  atcaaatgtagcttcttcaa 170
            ||||||||||||||||||||
Sbjct: 1257 atcaaatgtagcttcttcaa 1238
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>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence
          Length = 213683

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 191    ctactcggaactcacagtagaaag 214
              |||||| |||||||||||||||||
Sbjct: 146091 ctactctgaactcacagtagaaag 146068
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>ref|NG_005518.1| Homo sapiens zinc finger protein 705C pseudogene (ZNF705CP) on
             chromosome 8
          Length = 26370

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   aactcacagtagaaagaaac 218
             ||||||||||||||||||||
Sbjct: 23417 aactcacagtagaaagaaac 23436
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>gb|AC087203.12| Homo sapiens chromosome 8, clone RP11-351I21, complete sequence
          Length = 117500

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   aactcacagtagaaagaaac 218
             ||||||||||||||||||||
Sbjct: 27423 aactcacagtagaaagaaac 27442
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>gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, complete sequence
          Length = 216977

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   atttaacagaacatgtctgc 341
             ||||||||||||||||||||
Sbjct: 73587 atttaacagaacatgtctgc 73568
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>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04,
             complete sequence
          Length = 107631

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    tttagttcaaatttgagctaaaca 42
             |||||||||||||||| |||||||
Sbjct: 86518 tttagttcaaatttgaactaaaca 86541
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>emb|CR318631.5| Zebrafish DNA sequence from clone DKEY-207D5 in linkage group 18,
             complete sequence
          Length = 189711

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 199   aactcacagtagaaagaaacaagc 222
             ||||||||||||||| ||||||||
Sbjct: 55629 aactcacagtagaaaaaaacaagc 55606
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>emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 in linkage group 18,
             complete sequence
          Length = 166185

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 199   aactcacagtagaaagaaacaagc 222
             ||||||||||||||| ||||||||
Sbjct: 97948 aactcacagtagaaaaaaacaagc 97971
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>emb|BX000347.7| Zebrafish DNA sequence from clone DKEY-66C4 in linkage group 18, complete
              sequence
          Length = 155713

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 199    aactcacagtagaaagaaacaagc 222
              ||||||||||||||| ||||||||
Sbjct: 109376 aactcacagtagaaaaaaacaagc 109399
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>gb|AC157487.1| Genomic sequence for Zea mays clone ZMMBBb0614J24, from chromosome 8,
            complete sequence
          Length = 136932

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 19   tttagttcaaatttgagctaaaca 42
            |||||||||||||||| |||||||
Sbjct: 3301 tttagttcaaatttgaactaaaca 3324
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>gb|AC005670.1|AC005670 Homo sapiens chromosome 17, clone hRPK.63_A_1, complete sequence
          Length = 147902

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   atagcttcacaaaaaataac 378
             ||||||||||||||||||||
Sbjct: 58090 atagcttcacaaaaaataac 58071
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>dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04I02, TM0021,
             complete sequence
          Length = 83700

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   tagcggtaaaatcaatcaac 138
             ||||||||||||||||||||
Sbjct: 16750 tagcggtaaaatcaatcaac 16769


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,240,893
Number of Sequences: 3902068
Number of extensions: 4240893
Number of successful extensions: 92263
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92100
Number of HSP's gapped (non-prelim): 163
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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