ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet23c10 |
|---|---|
| Clone Library Name | barley_pub |
>ZN622_CHICK (Q90Y35) Zinc finger protein 622 (Zn-finger protein C47)| Length = 405 Score = 30.8 bits (68), Expect = 0.84 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 228 RAPFARASTERTYAKRGWRRSNYRRRLADLP 320 R F A +R + K W R N +R++AD+P Sbjct: 10 RVAFKDADIQRAHYKTDWHRYNLKRKVADMP 40
>PRT2_SEPOF (P80002) Spermatid-specific protein T2 [Contains:| Spermatid-specific protein T2B; Sperm protamine SP2] Length = 77 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 156 KRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 +R+++RR RR+ R R+P+ R R +R RR YRRR Sbjct: 25 RRRSRRR---------RRSRRRRSRSPYRRRYRRRRRRRRSRRRRRYRRR 65
>ITB8_RABIT (P26013) Integrin beta-8 precursor| Length = 768 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = -3 Query: 120 RGKCTCERAPCAETPTCNFACLFYEHCPRA*FKCLE 13 RG C C R C++ + C EHCP C E Sbjct: 604 RGTCVCGRCECSDPRSIGRFC---EHCPTCPTACSE 636
>MATK_GOSHI (Q6EIK6) Maturase K (Intron maturase)| Length = 504 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 194 SDQLQGSSFCFPFVRCNYSHYVYVVEANVP 105 S LQ FPF+ +SH YV+EA +P Sbjct: 123 SHNLQSIHSIFPFLEDKFSHLNYVLEALIP 152
>YB9M_YEAST (P38344) 45.8 kDa protein in SHM1-MRPL37 intergenic region| Length = 393 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 237 FARASTERTYAKRGWRRSNYRRRLADLP 320 F + +R + K W R N +RR+A LP Sbjct: 16 FDSSDEQRAHMKSDWHRYNLKRRVAQLP 43
>LAMA3_MOUSE (Q61789) Laminin alpha-3 chain precursor (Nicein alpha subunit)| Length = 3333 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 93 PCAETPTCNFACLFYEHCPRA*FKC 19 PCA T + CL Y+H P F C Sbjct: 880 PCAHTGSPQDNCLLYQHLPLTAFSC 904
>ITB8_HUMAN (P26012) Integrin beta-8 precursor| Length = 769 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/36 (36%), Positives = 15/36 (41%) Frame = -3 Query: 120 RGKCTCERAPCAETPTCNFACLFYEHCPRA*FKCLE 13 RG C C R C + + C EHCP C E Sbjct: 604 RGTCVCGRCECTDPRSIGRFC---EHCPTCYTACKE 636
>MATK_STAPI (Q5VH43) Maturase K (Intron maturase)| Length = 502 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 194 SDQLQGSSFCFPFVRCNYSHYVYVVEANVP 105 S LQ FPF+ +SH+ YV++ +P Sbjct: 125 SSNLQSIHSIFPFLEDKFSHFNYVLDVLIP 154
>PAT3_CAEEL (Q27874) Integrin beta pat-3 precursor| Length = 809 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -3 Query: 120 RGKCTCERAPCAETPTCN-FACLFYEHCPRA*FKCLE 13 +G+C C R C ++P N ++ E CP KC+E Sbjct: 620 KGECICGRCRCFDSPDGNRYSGAKCEICPTCPTKCVE 656
>HSP1_PSEWO (Q71VG4) Sperm protamine P1| Length = 62 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>HSP1_PSENI (Q71VG5) Sperm protamine P1| Length = 62 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>HSP1_PSEMD (P67832) Sperm protamine P1| Length = 62 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>HSP1_PARBI (O18768) Sperm protamine P1| Length = 61 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>HSP1_PARAP (P67831) Sperm protamine P1| Length = 62 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>HSP1_MYOWA (Q71VG9) Sperm protamine P1| Length = 62 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>HSP1_MYOME (Q71VH0) Sperm protamine P1| Length = 62 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>HSP1_DASRO (P67830) Sperm protamine P1| Length = 62 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>HSP1_DASBY (Q71VG7) Sperm protamine P1| Length = 62 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 153 YKRKTKRRALELI*SSARRASPNRGRAPFARASTERTYAKRGWRRSNYRRR 305 Y+R ++ R+ RR S +R R R S + +RG RR RRR Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHRNRRRTYRRSRRHSRRRRGRRRGYSRRR 53
>MATK_NICAL (Q95DQ2) Maturase K (Intron maturase)| Length = 509 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -1 Query: 194 SDQLQGSSFCFPFVRCNYSHYVYVVEANVP 105 S LQ FPF+ N+SH YV++ +P Sbjct: 127 SHNLQSIHSTFPFLEDNFSHLNYVLDILIP 156
>MATK_KIGAF (Q9TIR9) Maturase K (Intron maturase)| Length = 509 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = -1 Query: 194 SDQLQGSSFCFPFVRCNYSHYVYVVEANVP 105 S L+ FPF+ N+SH+ +V++ +P Sbjct: 122 SQNLRSIHSIFPFLEDNFSHFNFVLDIGIP 151
>EEA1_MOUSE (Q8BL66) Early endosome antigen 1| Length = 1411 Score = 27.7 bits (60), Expect = 7.1 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%) Frame = +2 Query: 8 NSSRHLN*ALGQCS*NKQAKLQVGVSAQGARSQVHLPL--QHRHSGNSYNVQKENKTTSP 181 ++ +HL + Q ++ K Q G+ QG SQ+H L R G ++ KE + S Sbjct: 386 STRQHLKVEVKQLQQQREEKEQHGLQLQGEVSQLHCKLLETERQLGEAHGRLKEQRQLSS 445 Query: 182 G---------VDLIISQARFTEQGKSTICTS 247 DL + +R EQ K + S Sbjct: 446 EKLMEKEQQVADLQLKLSRLEEQLKEKVTNS 476
>Y1454_OCEIH (Q8ER61) UPF0348 protein OB1454| Length = 400 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/43 (23%), Positives = 21/43 (48%) Frame = +2 Query: 131 HSGNSYNVQKENKTTSPGVDLIISQARFTEQGKSTICTSLHRT 259 H+G+ Y++ + ++ + I F ++G+ I HRT Sbjct: 14 HNGHQYHINQARNVSNSTCIIAIMSGNFLQRGEPAIIDKFHRT 56
>MATK_HEDHE (Q8WH60) Maturase K (Intron maturase)| Length = 505 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 194 SDQLQGSSFCFPFVRCNYSHYVYVVEANVP 105 S L+ FPF+ SH++YV+E +P Sbjct: 126 SHNLRSIHSIFPFLEDKISHFIYVLEILIP 155
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 357 PPASDRPHSRPGRVGQPVVGDSLIAAT 277 PP+S P S PG++GQP SL AT Sbjct: 962 PPSSRSPSSSPGQLGQPPGELSLGLAT 988
>ITBN_DROME (Q27591) Integrin beta-nu precursor| Length = 799 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 10/37 (27%) Frame = -3 Query: 120 RGKCTCERAPCAETPTCNFA----------CLFYEHC 40 RG C CE C E F CLFYE C Sbjct: 603 RGTCQCEECQCEEPYLGKFCEIDPEKDNKLCLFYEPC 639
>PTX3_MOUSE (P48759) Pentraxin-related protein PTX3 precursor (Pentaxin-related| protein PTX3) (Tumor necrosis factor-inducible protein TSG-14) Length = 381 Score = 27.3 bits (59), Expect = 9.3 Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Frame = +3 Query: 174 RALELI*SSARRASPNRGRAPFARAST-ERTYAKRGWRRSNYRRRLADLPYQDGCVAGHW 350 RALE + +R AS R A A E T G RR ADL VA HW Sbjct: 115 RALEPLLQESRDASLRLARLEDAEARRPEATVPGLGAVLEELRRTRADLSAVQSWVARHW 174 Query: 351 L-EGC 362 L GC Sbjct: 175 LPAGC 179
>YLPA_CAEEL (P34380) Hypothetical protein F02A9.1 precursor| Length = 200 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 117 GKCTCERAPCAETPTCNFACLF 52 G C R C +TP CN +C F Sbjct: 127 GNLPCGRYGCPQTPLCNGSCRF 148
>ZN622_RAT (Q7TM96) Zinc finger protein 622 (Liver regeneration-related| protein LRRG121) Length = 386 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +3 Query: 228 RAPFARASTERTYAKRGWRRSNYRRRLADL 317 R F A +R + K W R N RR++A++ Sbjct: 10 RVAFRDAEMQRAHYKTDWHRYNLRRKVANM 39
>LEU1_SCHPO (O59736) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 584 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 227 KSTICTSLHRTNIR*TRVAAIKLSPTTG*PTLPGRLCG 340 + +C SLH N R T VAA +L G + G L G Sbjct: 254 REKVCVSLHPHNDRGTAVAAAELGQLAGGDRIEGCLFG 291 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,918,670 Number of Sequences: 219361 Number of extensions: 748028 Number of successful extensions: 2365 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2301 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2365 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
