ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet23c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475883.1| Oryza sativa (japonica cultivar-group), predic... 58 2e-05
2gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4emb|AJ312313.1|OSA312313 Oryza sativa putative B'kappa gene for ... 58 2e-05
5emb|AJ272423.1|OSA272423 Oryza sativa partial mRNA for putative ... 58 2e-05
6dbj|AK069462.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
7gb|AY107361.1| Zea mays PCO100387 mRNA sequence 54 3e-04
8emb|BX510326.11| Zebrafish DNA sequence from clone DKEY-19O24 in... 46 0.079
9emb|BX511218.9| Zebrafish DNA sequence from clone DKEY-37K14 in ... 44 0.31
10emb|AL772132.6| Zebrafish DNA sequence from clone CH211-196N11, ... 44 0.31
11gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic seque... 42 1.2
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.2
13gb|AC090833.8| Homo sapiens chromosome 11, clone CTD-2520I17, co... 42 1.2
14gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, c... 42 1.2
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16gb|AY731289.1| Zea mays cultivar Il14H promoter region (whp1) ge... 40 4.9 
>ref|XM_475883.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1533

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 319  cctaccaggacggctgtgtggccggtcactggctgga 355
            ||||||||||||||||| ||||| |||||||||||||
Sbjct: 1493 cctaccaggacggctgtatggcccgtcactggctgga 1457
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>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10,
             complete sequence
          Length = 116469

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 319   cctaccaggacggctgtgtggccggtcactggctgga 355
             ||||||||||||||||| ||||| |||||||||||||
Sbjct: 97235 cctaccaggacggctgtatggcccgtcactggctgga 97199
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 319      cctaccaggacggctgtgtggccggtcactggctgga 355
                ||||||||||||||||| ||||| |||||||||||||
Sbjct: 27384778 cctaccaggacggctgtatggcccgtcactggctgga 27384742
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>emb|AJ312313.1|OSA312313 Oryza sativa putative B'kappa gene for protein phosphatase 2A B'kappa
            subunit, exons 1-2
          Length = 2942

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 319  cctaccaggacggctgtgtggccggtcactggctgga 355
            ||||||||||||||||| ||||| |||||||||||||
Sbjct: 2486 cctaccaggacggctgtatggcccgtcactggctgga 2450
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>emb|AJ272423.1|OSA272423 Oryza sativa partial mRNA for putative B' regulatory subunit of
           PP2A (sircs1 gene)
          Length = 674

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 319 cctaccaggacggctgtgtggccggtcactggctgga 355
           ||||||||||||||||| ||||| |||||||||||||
Sbjct: 392 cctaccaggacggctgtatggcccgtcactggctgga 356
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>dbj|AK069462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024N22, full
            insert sequence
          Length = 2517

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 319  cctaccaggacggctgtgtggccggtcactggctgga 355
            ||||||||||||||||| ||||| |||||||||||||
Sbjct: 2213 cctaccaggacggctgtatggcccgtcactggctgga 2177
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>gb|AY107361.1| Zea mays PCO100387 mRNA sequence
          Length = 1564

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 319  cctaccaggacggctgtgtggccggtcactggctggagggctgcagc 365
            ||||| ||||||||||| ||||| |||||||||||||  ||||||||
Sbjct: 1195 cctactaggacggctgtatggccagtcactggctggaaagctgcagc 1149
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>emb|BX510326.11| Zebrafish DNA sequence from clone DKEY-19O24 in linkage group 24,
              complete sequence
          Length = 239398

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 43     atgttcataaaataagcaggcaa 65
              |||||||||||||||||||||||
Sbjct: 106404 atgttcataaaataagcaggcaa 106382
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>emb|BX511218.9| Zebrafish DNA sequence from clone DKEY-37K14 in linkage group 17,
             complete sequence
          Length = 152316

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 42    aatgttcataaaataagcaggc 63
             ||||||||||||||||||||||
Sbjct: 53011 aatgttcataaaataagcaggc 52990
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>emb|AL772132.6| Zebrafish DNA sequence from clone CH211-196N11, complete sequence
          Length = 205802

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 42     aatgttcataaaataagcaggc 63
              ||||||||||||||||||||||
Sbjct: 130436 aatgttcataaaataagcaggc 130415
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>gb|AC147427.2| Oryza sativa chromosome 3  B1394A07 genomic sequence, complete sequence
          Length = 175704

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 114    tgcctctacaacatagacata 134
              |||||||||||||||||||||
Sbjct: 117939 tgcctctacaacatagacata 117919
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 114      tgcctctacaacatagacata 134
                |||||||||||||||||||||
Sbjct: 24517921 tgcctctacaacatagacata 24517941
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>gb|AC090833.8| Homo sapiens chromosome 11, clone CTD-2520I17, complete sequence
          Length = 164963

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 5     agaaatagctctagacacttgaatt 29
             ||||| |||||||||||||||||||
Sbjct: 69308 agaaagagctctagacacttgaatt 69332
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>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence
          Length = 111912

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 43   atgttcataaaataagcaggc 63
            |||||||||||||||||||||
Sbjct: 8037 atgttcataaaataagcaggc 8017
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 114      tgcctctacaacatagacata 134
                |||||||||||||||||||||
Sbjct: 24435390 tgcctctacaacatagacata 24435410
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>gb|AY731289.1| Zea mays cultivar Il14H promoter region (whp1) gene, complete
           sequence; and white pollen 1 chalcone synthase (whp1)
           gene, exon 1 and partial cds
          Length = 859

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 tacaacgtacaaaaggaaaa 165
           ||||||||||||||||||||
Sbjct: 463 tacaacgtacaaaaggaaaa 482


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,845,868
Number of Sequences: 3902068
Number of extensions: 2845868
Number of successful extensions: 66868
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66791
Number of HSP's gapped (non-prelim): 77
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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