ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet23c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464670.1| Oryza sativa (japonica cultivar-group), mRNA 204 2e-49
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
3dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
4dbj|AK107161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
5ref|XM_464672.1| Oryza sativa (japonica cultivar-group), mRNA 198 1e-47
6dbj|AK105964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
7gb|BT009396.1| Triticum aestivum clone wlm96.pk039.g16:fis, full... 52 0.002
8emb|AJ318870.1|HVU318870 Hordeum vulgare mRNA for fatty acid hyd... 46 0.099
9gb|AY540745.1| Zea mays hydroperoxide lyase (HPL) mRNA, complete... 44 0.39
10gb|AY196004.1| Triticum aestivum allene oxide synthase (TaAOS) m... 44 0.39
11gb|AY104568.1| Zea mays PCO137115 mRNA sequence 44 0.39
12gb|AY325570.1| Uncultured bacterium clone GG12 putative dissimil... 42 1.5
13gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, comple... 42 1.5
14gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.5
15ref|NM_187610.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
16ref|XM_463821.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
17gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.1
19gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage ... 40 6.1
20gb|AC123813.4| Mus musculus BAC clone RP24-229D8 from chromosome... 40 6.1
21gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
22gb|AC093709.2| Pan troglodytes clone RP43-180A19, complete sequence 40 6.1
23gb|AY340220.1| Oryza sativa (japonica cultivar-group) hydroperox... 40 6.1
24gb|AC094014.3| Papio anubis clone RP41-371B12, complete sequence 40 6.1
25gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxi... 40 6.1
26gb|AC004491.2| Homo sapiens BAC clone CTB-139P11 from 7q11-q21, ... 40 6.1
27gb|AC068037.5| Homo sapiens BAC clone RP11-757K22 from 4, comple... 40 6.1
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
29dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
30gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, compl... 40 6.1
31gb|AC154205.1| Mus musculus BAC clone RP24-88I1 from chromosome ... 40 6.1
32dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
33dbj|AK105694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
34emb|AJ335522.1|HSA335522 Homo sapiens genomic sequence surroundi... 40 6.1
35gb|AY055775.1| Oryza sativa allene oxide synthase (AOS) mRNA, co... 40 6.1
36dbj|AK100012.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
37dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
38dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
39gb|AF060813.1|AF060813 Serpulina murdochii strain 56-150 NADH ox... 40 6.1
40gb|AF060805.1|AF060805 Brachyspira innocens strain 4/71 NADH oxi... 40 6.1
41gb|AF060804.1|AF060804 Brachyspira innocens strain B256 NADH oxi... 40 6.1
42gb|AF060803.1|AF060803 Serpulina murdochii strain 155-20 NADH ox... 40 6.1
43gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
44emb|AL606927.12| Mouse DNA sequence from clone RP23-144I6 on chr... 40 6.1
45gb|L14313.1|HUMTRPTL Homo sapiens DNA sequence, tandem repeat re... 40 6.1
46gb|U00428.1|U00428 Linum usitatissimum allene oxide synthase mRN... 40 6.1 
>ref|XM_464670.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1721

 Score =  204 bits (103), Expect = 2e-49
 Identities = 166/187 (88%)
 Strand = Plus / Minus

                                                                        
Query: 256  gtcagcgaagtgaacgtcaccaccggctccagcggcatctccttcacgtcggcggtgaac 315
            |||||||| |||||||||||||||||||||| ||||  ||||  ||||||||||| ||||
Sbjct: 1556 gtcagcgacgtgaacgtcaccaccggctccaccggcgcctccaccacgtcggcggcgaac 1497

                                                                        
Query: 316  gtgtcgtaccgccggaacagctcggccaccattagcctcccaaccgccgtcaccatgtcc 375
            ||||||||||||||||||||||| |||||||| |||| ||| ||||||  ||||||||||
Sbjct: 1496 gtgtcgtaccgccggaacagctccgccaccatcagccgccccaccgccaccaccatgtcc 1437

                                                                        
Query: 376  ttccctgggcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgaccac 435
            ||||| ||||||||||||||||||||||  ||| | ||  |||| |||||||||||||||
Sbjct: 1436 ttcccggggcactgcttgttcccctccgatggcgccctcgtctccggcccgttcgaccac 1377

                   
Query: 436  accacgt 442
            |||||||
Sbjct: 1376 accacgt 1370
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  204 bits (103), Expect = 2e-49
 Identities = 166/187 (88%)
 Strand = Plus / Minus

                                                                           
Query: 256     gtcagcgaagtgaacgtcaccaccggctccagcggcatctccttcacgtcggcggtgaac 315
               |||||||| |||||||||||||||||||||| ||||  ||||  ||||||||||| ||||
Sbjct: 6629038 gtcagcgacgtgaacgtcaccaccggctccaccggcgcctccaccacgtcggcggcgaac 6628979

                                                                           
Query: 316     gtgtcgtaccgccggaacagctcggccaccattagcctcccaaccgccgtcaccatgtcc 375
               ||||||||||||||||||||||| |||||||| |||| ||| ||||||  ||||||||||
Sbjct: 6628978 gtgtcgtaccgccggaacagctccgccaccatcagccgccccaccgccaccaccatgtcc 6628919

                                                                           
Query: 376     ttccctgggcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgaccac 435
               ||||| ||||||||||||||||||||||  ||| | ||  |||| |||||||||||||||
Sbjct: 6628918 ttcccggggcactgcttgttcccctccgatggcgccctcgtctccggcccgttcgaccac 6628859

                      
Query: 436     accacgt 442
               |||||||
Sbjct: 6628858 accacgt 6628852



 Score =  198 bits (100), Expect = 1e-47
 Identities = 166/188 (88%)
 Strand = Plus / Minus

                                                                           
Query: 255     ggtcagcgaagtgaacgtcaccaccggctccagcggcatctccttcacgtcggcggtgaa 314
               ||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| |||
Sbjct: 6638635 ggtcagcgacgtgaacgtgaccaccggctcaagcggcagctcctccacgtcggcggcgaa 6638576

                                                                           
Query: 315     cgtgtcgtaccgccggaacagctcggccaccattagcctcccaaccgccgtcaccatgtc 374
               |||||||||||||||||||||| | |||||||| |||| ||| ||||||  |||||||||
Sbjct: 6638575 cgtgtcgtaccgccggaacagccccgccaccatcagccgccccaccgccaccaccatgtc 6638516

                                                                           
Query: 375     cttccctgggcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgacca 434
               |||||| ||||||||||||||||||||||  |||   | | |||| ||||||||||||||
Sbjct: 6638515 cttcccggggcactgcttgttcccctccgatggcgtcccggtctccggcccgttcgacca 6638456

                       
Query: 435     caccacgt 442
               ||||||||
Sbjct: 6638455 caccacgt 6638448



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 318    gtcgtaccgccggaacagctcggc 341
              ||||||||||||||| ||||||||
Sbjct: 556035 gtcgtaccgccggaaaagctcggc 556012
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  204 bits (103), Expect = 2e-49
 Identities = 166/187 (88%)
 Strand = Plus / Minus

                                                                         
Query: 256   gtcagcgaagtgaacgtcaccaccggctccagcggcatctccttcacgtcggcggtgaac 315
             |||||||| |||||||||||||||||||||| ||||  ||||  ||||||||||| ||||
Sbjct: 63413 gtcagcgacgtgaacgtcaccaccggctccaccggcgcctccaccacgtcggcggcgaac 63354

                                                                         
Query: 316   gtgtcgtaccgccggaacagctcggccaccattagcctcccaaccgccgtcaccatgtcc 375
             ||||||||||||||||||||||| |||||||| |||| ||| ||||||  ||||||||||
Sbjct: 63353 gtgtcgtaccgccggaacagctccgccaccatcagccgccccaccgccaccaccatgtcc 63294

                                                                         
Query: 376   ttccctgggcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgaccac 435
             ||||| ||||||||||||||||||||||  ||| | ||  |||| |||||||||||||||
Sbjct: 63293 ttcccggggcactgcttgttcccctccgatggcgccctcgtctccggcccgttcgaccac 63234

                    
Query: 436   accacgt 442
             |||||||
Sbjct: 63233 accacgt 63227



 Score =  198 bits (100), Expect = 1e-47
 Identities = 166/188 (88%)
 Strand = Plus / Minus

                                                                         
Query: 255   ggtcagcgaagtgaacgtcaccaccggctccagcggcatctccttcacgtcggcggtgaa 314
             ||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| |||
Sbjct: 73010 ggtcagcgacgtgaacgtgaccaccggctcaagcggcagctcctccacgtcggcggcgaa 72951

                                                                         
Query: 315   cgtgtcgtaccgccggaacagctcggccaccattagcctcccaaccgccgtcaccatgtc 374
             |||||||||||||||||||||| | |||||||| |||| ||| ||||||  |||||||||
Sbjct: 72950 cgtgtcgtaccgccggaacagccccgccaccatcagccgccccaccgccaccaccatgtc 72891

                                                                         
Query: 375   cttccctgggcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgacca 434
             |||||| ||||||||||||||||||||||  |||   | | |||| ||||||||||||||
Sbjct: 72890 cttcccggggcactgcttgttcccctccgatggcgtcccggtctccggcccgttcgacca 72831

                     
Query: 435   caccacgt 442
             ||||||||
Sbjct: 72830 caccacgt 72823
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>dbj|AK107161.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F02, full
            insert sequence
          Length = 1721

 Score =  204 bits (103), Expect = 2e-49
 Identities = 166/187 (88%)
 Strand = Plus / Minus

                                                                        
Query: 256  gtcagcgaagtgaacgtcaccaccggctccagcggcatctccttcacgtcggcggtgaac 315
            |||||||| |||||||||||||||||||||| ||||  ||||  ||||||||||| ||||
Sbjct: 1556 gtcagcgacgtgaacgtcaccaccggctccaccggcgcctccaccacgtcggcggcgaac 1497

                                                                        
Query: 316  gtgtcgtaccgccggaacagctcggccaccattagcctcccaaccgccgtcaccatgtcc 375
            ||||||||||||||||||||||| |||||||| |||| ||| ||||||  ||||||||||
Sbjct: 1496 gtgtcgtaccgccggaacagctccgccaccatcagccgccccaccgccaccaccatgtcc 1437

                                                                        
Query: 376  ttccctgggcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgaccac 435
            ||||| ||||||||||||||||||||||  ||| | ||  |||| |||||||||||||||
Sbjct: 1436 ttcccggggcactgcttgttcccctccgatggcgccctcgtctccggcccgttcgaccac 1377

                   
Query: 436  accacgt 442
            |||||||
Sbjct: 1376 accacgt 1370
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>ref|XM_464672.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1856

 Score =  198 bits (100), Expect = 1e-47
 Identities = 166/188 (88%)
 Strand = Plus / Minus

                                                                        
Query: 255  ggtcagcgaagtgaacgtcaccaccggctccagcggcatctccttcacgtcggcggtgaa 314
            ||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| |||
Sbjct: 1563 ggtcagcgacgtgaacgtgaccaccggctcaagcggcagctcctccacgtcggcggcgaa 1504

                                                                        
Query: 315  cgtgtcgtaccgccggaacagctcggccaccattagcctcccaaccgccgtcaccatgtc 374
            |||||||||||||||||||||| | |||||||| |||| ||| ||||||  |||||||||
Sbjct: 1503 cgtgtcgtaccgccggaacagccccgccaccatcagccgccccaccgccaccaccatgtc 1444

                                                                        
Query: 375  cttccctgggcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgacca 434
            |||||| ||||||||||||||||||||||  |||   | | |||| ||||||||||||||
Sbjct: 1443 cttcccggggcactgcttgttcccctccgatggcgtcccggtctccggcccgttcgacca 1384

                    
Query: 435  caccacgt 442
            ||||||||
Sbjct: 1383 caccacgt 1376
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>dbj|AK105964.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E05, full
            insert sequence
          Length = 1856

 Score =  198 bits (100), Expect = 1e-47
 Identities = 166/188 (88%)
 Strand = Plus / Minus

                                                                        
Query: 255  ggtcagcgaagtgaacgtcaccaccggctccagcggcatctccttcacgtcggcggtgaa 314
            ||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| |||
Sbjct: 1563 ggtcagcgacgtgaacgtgaccaccggctcaagcggcagctcctccacgtcggcggcgaa 1504

                                                                        
Query: 315  cgtgtcgtaccgccggaacagctcggccaccattagcctcccaaccgccgtcaccatgtc 374
            |||||||||||||||||||||| | |||||||| |||| ||| ||||||  |||||||||
Sbjct: 1503 cgtgtcgtaccgccggaacagccccgccaccatcagccgccccaccgccaccaccatgtc 1444

                                                                        
Query: 375  cttccctgggcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgacca 434
            |||||| ||||||||||||||||||||||  |||   | | |||| ||||||||||||||
Sbjct: 1443 cttcccggggcactgcttgttcccctccgatggcgtcccggtctccggcccgttcgacca 1384

                    
Query: 435  caccacgt 442
            ||||||||
Sbjct: 1383 caccacgt 1376
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>gb|BT009396.1| Triticum aestivum clone wlm96.pk039.g16:fis, full insert mRNA
            sequence
          Length = 1870

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 301  acgtcggcggtgaacgtgtcgtaccgccggaacagctc 338
            |||||||||||||| |||||||||||  ||||||||||
Sbjct: 1479 acgtcggcggtgaaggtgtcgtaccggaggaacagctc 1442
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>emb|AJ318870.1|HVU318870 Hordeum vulgare mRNA for fatty acid hydroperoxide lyase (13-hpl gene)
          Length = 1673

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 384  gcactgcttgttcccctccgccggctcgctgttctcaggcccgttcgacca 434
            ||||||||||||||||  ||||||||| | | |||| |||||||| |||||
Sbjct: 1368 gcactgcttgttccccagcgccggctccccggtctccggcccgttggacca 1318
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>gb|AY540745.1| Zea mays hydroperoxide lyase (HPL) mRNA, complete cds
          Length = 1652

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 318  gtcgtaccgccggaacagctcggcca 343
            |||||| |||||||||||||||||||
Sbjct: 1487 gtcgtagcgccggaacagctcggcca 1462
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>gb|AY196004.1| Triticum aestivum allene oxide synthase (TaAOS) mRNA, complete cds
          Length = 1779

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 301  acgtcggcggtgaacgtgtcgtaccg 326
            |||||||||||||| |||||||||||
Sbjct: 1411 acgtcggcggtgaaggtgtcgtaccg 1386
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>gb|AY104568.1| Zea mays PCO137115 mRNA sequence
          Length = 1938

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 318  gtcgtaccgccggaacagctcggcca 343
            |||||| |||||||||||||||||||
Sbjct: 1487 gtcgtagcgccggaacagctcggcca 1462
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>gb|AY325570.1| Uncultured bacterium clone GG12 putative dissimilatory
           membrane-bound nitrate reductase (narG) gene, partial
           cds
          Length = 641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 302 cgtcggcggtgaacgtgtcgtaccg 326
           |||||||| ||||||||||||||||
Sbjct: 151 cgtcggcgctgaacgtgtcgtaccg 127
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>gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, complete sequence
          Length = 158216

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   tagtcactcggccctggtggt 257
             |||||||||||||||||||||
Sbjct: 58925 tagtcactcggccctggtggt 58905
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 269     acgtcaccaccggctccagcggcat 293
               |||||||||||||| ||||||||||
Sbjct: 1590144 acgtcaccaccggcgccagcggcat 1590120
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>ref|NM_187610.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 304  tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
            ||||||||||| |||||||||||  |||| ||||||
Sbjct: 1367 tcggcggtgaaggtgtcgtaccggaggaagagctcg 1332
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>ref|XM_463821.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 318  gtcgtaccgccggaacagctcggc 341
            ||||||||||||||| ||||||||
Sbjct: 1457 gtcgtaccgccggaaaagctcggc 1434
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>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   ccgccgtcaccatgtccttc 378
             ||||||||||||||||||||
Sbjct: 31949 ccgccgtcaccatgtccttc 31930
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 304     tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
               ||||||||||| |||||||||||  |||| ||||||
Sbjct: 6578486 tcggcggtgaaggtgtcgtaccggaggaagagctcg 6578451
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>gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage seedling allene
            oxide synthase (AOS) gene, complete cds
          Length = 2465

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 304  tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
            ||||||||||| |||||||||||  |||| ||||||
Sbjct: 1762 tcggcggtgaaggtgtcgtaccggaggaagagctcg 1727
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>gb|AC123813.4| Mus musculus BAC clone RP24-229D8 from chromosome 8, complete sequence
          Length = 175377

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      aatgtaaataaagcttttta 22
              ||||||||||||||||||||
Sbjct: 122234 aatgtaaataaagcttttta 122215
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>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02,
              complete sequence
          Length = 162425

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 304    tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
              ||||||||||| |||||||||||  |||| ||||||
Sbjct: 121248 tcggcggtgaaggtgtcgtaccggaggaagagctcg 121213
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>gb|AC093709.2| Pan troglodytes clone RP43-180A19, complete sequence
          Length = 195646

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    tcaggcccgttcgaccacac 437
              ||||||||||||||||||||
Sbjct: 145664 tcaggcccgttcgaccacac 145645
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>gb|AY340220.1| Oryza sativa (japonica cultivar-group) hydroperoxide lyase (HPL1)
            gene, complete cds
          Length = 1731

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 318  gtcgtaccgccggaacagctcggc 341
            ||||||||||||||| ||||||||
Sbjct: 1470 gtcgtaccgccggaaaagctcggc 1447
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>gb|AC094014.3| Papio anubis clone RP41-371B12, complete sequence
          Length = 161946

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   tcaggcccgttcgaccacac 437
             ||||||||||||||||||||
Sbjct: 90213 tcaggcccgttcgaccacac 90194
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>gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxide synthase mRNA,
            complete cds
          Length = 1775

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 304  tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
            ||||||||||| |||||||||||  |||| ||||||
Sbjct: 1484 tcggcggtgaaggtgtcgtaccggaggaagagctcg 1449
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>gb|AC004491.2| Homo sapiens BAC clone CTB-139P11 from 7q11-q21, complete sequence
          Length = 175839

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   tcaggcccgttcgaccacac 437
             ||||||||||||||||||||
Sbjct: 22498 tcaggcccgttcgaccacac 22517
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>gb|AC068037.5| Homo sapiens BAC clone RP11-757K22 from 4, complete sequence
          Length = 206136

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      aatgtaaataaagcttttta 22
              ||||||||||||||||||||
Sbjct: 201138 aatgtaaataaagcttttta 201157
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     ccgccgtcaccatgtccttc 378
               ||||||||||||||||||||
Sbjct: 3437994 ccgccgtcaccatgtccttc 3437975
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 304     tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
               ||||||||||| |||||||||||  |||| ||||||
Sbjct: 6577699 tcggcggtgaaggtgtcgtaccggaggaagagctcg 6577664
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>gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, complete sequence
          Length = 126052

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   ccttccctgggcactgcttg 393
             ||||||||||||||||||||
Sbjct: 19810 ccttccctgggcactgcttg 19791
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>gb|AC154205.1| Mus musculus BAC clone RP24-88I1 from chromosome 14, complete sequence
          Length = 219623

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tgtaaataaagctttttatt 24
              ||||||||||||||||||||
Sbjct: 116628 tgtaaataaagctttttatt 116609
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>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0501G04
          Length = 156603

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 318   gtcgtaccgccggaacagctcggc 341
             ||||||||||||||| ||||||||
Sbjct: 34088 gtcgtaccgccggaaaagctcggc 34065
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>dbj|AK105694.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C08, full
            insert sequence
          Length = 1742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 318  gtcgtaccgccggaacagctcggc 341
            ||||||||||||||| ||||||||
Sbjct: 1457 gtcgtaccgccggaaaagctcggc 1434
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>emb|AJ335522.1|HSA335522 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-BM21RS
          Length = 746

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 157 gtctactatagcaattatta 176
           ||||||||||||||||||||
Sbjct: 606 gtctactatagcaattatta 587
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>gb|AY055775.1| Oryza sativa allene oxide synthase (AOS) mRNA, complete cds
          Length = 1809

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 304  tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
            ||||||||||| |||||||||||  |||| ||||||
Sbjct: 1493 tcggcggtgaaggtgtcgtaccggaggaagagctcg 1458
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>dbj|AK100012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140G07, full
            insert sequence
          Length = 1646

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 318  gtcgtaccgccggaacagctcggc 341
            ||||||||||||||| ||||||||
Sbjct: 1400 gtcgtaccgccggaaaagctcggc 1377
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>dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052K11, full
            insert sequence
          Length = 1974

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 304  tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
            ||||||||||| |||||||||||  |||| ||||||
Sbjct: 1630 tcggcggtgaaggtgtcgtaccggaggaagagctcg 1595
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>dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A10, full
            insert sequence
          Length = 1843

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 304  tcggcggtgaacgtgtcgtaccgccggaacagctcg 339
            ||||||||||| |||||||||||  |||| ||||||
Sbjct: 1507 tcggcggtgaaggtgtcgtaccggaggaagagctcg 1472
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>gb|AF060813.1|AF060813 Serpulina murdochii strain 56-150 NADH oxidase gene, partial cds
          Length = 1273

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 147 cagtagcacagtctactatagcaa 170
           |||||||||||||| |||||||||
Sbjct: 854 cagtagcacagtctcctatagcaa 831
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>gb|AF060805.1|AF060805 Brachyspira innocens strain 4/71 NADH oxidase gene, partial cds
          Length = 1252

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 147 cagtagcacagtctactatagcaa 170
           |||||||||||||| |||||||||
Sbjct: 855 cagtagcacagtctcctatagcaa 832
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>gb|AF060804.1|AF060804 Brachyspira innocens strain B256 NADH oxidase gene, partial cds
          Length = 1239

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 147 cagtagcacagtctactatagcaa 170
           |||||||||||||| |||||||||
Sbjct: 841 cagtagcacagtctcctatagcaa 818
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>gb|AF060803.1|AF060803 Serpulina murdochii strain 155-20 NADH oxidase gene, partial cds
          Length = 1265

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 147 cagtagcacagtctactatagcaa 170
           |||||||||||||| |||||||||
Sbjct: 845 cagtagcacagtctcctatagcaa 822
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     ccgccgtcaccatgtccttc 378
               ||||||||||||||||||||
Sbjct: 3446698 ccgccgtcaccatgtccttc 3446679
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>emb|AL606927.12| Mouse DNA sequence from clone RP23-144I6 on chromosome 4, complete
            sequence
          Length = 212373

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  acttggcagttgcactatag 215
            ||||||||||||||||||||
Sbjct: 3968 acttggcagttgcactatag 3949
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>gb|L14313.1|HUMTRPTL Homo sapiens DNA sequence, tandem repeat region
          Length = 268

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   aatgtaaataaagcttttta 22
           ||||||||||||||||||||
Sbjct: 135 aatgtaaataaagcttttta 116
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>gb|U00428.1|U00428 Linum usitatissimum allene oxide synthase mRNA complete cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 373  tccttccctgggcactgcttgttc 396
            |||||||||| |||||||||||||
Sbjct: 1726 tccttccctgcgcactgcttgttc 1703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,567,695
Number of Sequences: 3902068
Number of extensions: 3567695
Number of successful extensions: 65893
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65548
Number of HSP's gapped (non-prelim): 341
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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