| Clone Name | rbaet22d03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY090547.1| Deschampsia antarctica clone Dacor 1.2 unknown mRNA, 3' UTR and partial cds Length = 753 Score = 250 bits (126), Expect = 1e-63 Identities = 180/198 (90%) Strand = Plus / Minus Query: 1 gtacaggaggttcacctccatgccattggaatctccccaacatcgatttaattccttccc 60 ||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||||| Sbjct: 395 gtacaagaggttcacctccatgccattggcacctccccaacatcaatttaattccttcca 336 Query: 61 agggggagtgaccggcatgagtatgtttccctgaaatcaaacttgttggaggaagtgaaa 120 ||||||||||||| ||||||||| || ||| |||||||| |||||||||| ||||||||| Sbjct: 335 agggggagtgacctgcatgagtaggtctccttgaaatcagacttgttggacgaagtgaaa 276 Query: 121 attgatgcatacactttcttgtttgcatgagccggtgcatgatctgcaaccttaaaccgc 180 || || |||||||||||||||||||||| ||||||||||||||| ||| |||| |||||| Sbjct: 275 atcgacgcatacactttcttgtttgcataagccggtgcatgatccgcagccttgaaccgc 216 Query: 181 tttgctggggcagcctcc 198 || ||||||||||||||| Sbjct: 215 ttagctggggcagcctcc 198
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 109 bits (55), Expect = 3e-21 Identities = 112/131 (85%) Strand = Plus / Plus Query: 52 ttccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaacttgttggag 111 |||||||| ||||| |||||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 4200234 ttccttccaaggggaagtgaccggcatgagtatgtctccttgaaatctgacttcttggaa 4200293 Query: 112 gaagtgaaaattgatgcatacactttcttgtttgcatgagccggtgcatgatctgcaacc 171 ||||| ||||| ||||||||||||| |||||||||| || |||||||| ||| || || Sbjct: 4200294 gaagtaaaaatcgatgcatacacttctttgtttgcatatgctggtgcatggtctccagcc 4200353 Query: 172 ttaaaccgctt 182 || |||||||| Sbjct: 4200354 ttgaaccgctt 4200364
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 109 bits (55), Expect = 3e-21 Identities = 112/131 (85%) Strand = Plus / Plus Query: 52 ttccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaacttgttggag 111 |||||||| ||||| |||||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 45455 ttccttccaaggggaagtgaccggcatgagtatgtctccttgaaatctgacttcttggaa 45514 Query: 112 gaagtgaaaattgatgcatacactttcttgtttgcatgagccggtgcatgatctgcaacc 171 ||||| ||||| ||||||||||||| |||||||||| || |||||||| ||| || || Sbjct: 45515 gaagtaaaaatcgatgcatacacttctttgtttgcatatgctggtgcatggtctccagcc 45574 Query: 172 ttaaaccgctt 182 || |||||||| Sbjct: 45575 ttgaaccgctt 45585
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0036B04 Length = 136159 Score = 109 bits (55), Expect = 3e-21 Identities = 112/131 (85%) Strand = Plus / Plus Query: 52 ttccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaacttgttggag 111 |||||||| ||||| |||||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 133493 ttccttccaaggggaagtgaccggcatgagtatgtctccttgaaatctgacttcttggaa 133552 Query: 112 gaagtgaaaattgatgcatacactttcttgtttgcatgagccggtgcatgatctgcaacc 171 ||||| ||||| ||||||||||||| |||||||||| || |||||||| ||| || || Sbjct: 133553 gaagtaaaaatcgatgcatacacttctttgtttgcatatgctggtgcatggtctccagcc 133612 Query: 172 ttaaaccgctt 182 || |||||||| Sbjct: 133613 ttgaaccgctt 133623
>dbj|AK109370.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D12, full insert sequence Length = 1403 Score = 109 bits (55), Expect = 3e-21 Identities = 112/131 (85%) Strand = Plus / Minus Query: 52 ttccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaacttgttggag 111 |||||||| ||||| |||||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 1147 ttccttccaaggggaagtgaccggcatgagtatgtctccttgaaatctgacttcttggaa 1088 Query: 112 gaagtgaaaattgatgcatacactttcttgtttgcatgagccggtgcatgatctgcaacc 171 ||||| ||||| ||||||||||||| |||||||||| || |||||||| ||| || || Sbjct: 1087 gaagtaaaaatcgatgcatacacttctttgtttgcatatgctggtgcatggtctccagcc 1028 Query: 172 ttaaaccgctt 182 || |||||||| Sbjct: 1027 ttgaaccgctt 1017
>dbj|AK102112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084G03, full insert sequence Length = 1473 Score = 109 bits (55), Expect = 3e-21 Identities = 112/131 (85%) Strand = Plus / Minus Query: 52 ttccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaacttgttggag 111 |||||||| ||||| |||||||||||||||||||| ||| ||||||| |||| ||||| Sbjct: 1142 ttccttccaaggggaagtgaccggcatgagtatgtctccttgaaatctgacttcttggaa 1083 Query: 112 gaagtgaaaattgatgcatacactttcttgtttgcatgagccggtgcatgatctgcaacc 171 ||||| ||||| ||||||||||||| |||||||||| || |||||||| ||| || || Sbjct: 1082 gaagtaaaaatcgatgcatacacttctttgtttgcatatgctggtgcatggtctccagcc 1023 Query: 172 ttaaaccgctt 182 || |||||||| Sbjct: 1022 ttgaaccgctt 1012
>gb|AC007866.11| Trypanosoma brucei chromosome 2 clone RPCI93-36E18, complete sequence Length = 110159 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tgttggaggaagtgaaaattg 124 ||||||||||||||||||||| Sbjct: 55007 tgttggaggaagtgaaaattg 55027 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 tgttggaggaagtgaaaat 122 ||||||||||||||||||| Sbjct: 76075 tgttggaggaagtgaaaat 76093
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tgttggaggaagtgaaaattg 124 ||||||||||||||||||||| Sbjct: 1138796 tgttggaggaagtgaaaattg 1138816 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 tgttggaggaagtgaaaat 122 ||||||||||||||||||| Sbjct: 1159864 tgttggaggaagtgaaaat 1159882
>ref|XM_946659.1| Trypanosoma brucei TREU927 adenosine transporter 2 (Tb927.2.6240) partial mRNA Length = 1392 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tgttggaggaagtgaaaattg 124 ||||||||||||||||||||| Sbjct: 345 tgttggaggaagtgaaaattg 365
>gb|AC115724.10| Mus musculus chromosome 3, clone RP23-20L18, complete sequence Length = 208154 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 atgcatacactttcttgttt 144 |||||||||||||||||||| Sbjct: 157142 atgcatacactttcttgttt 157161
>gb|AC162717.3| Equus caballus clone CH241-248O22, complete sequence Length = 56228 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 gttggaggaagtgaaaattg 124 |||||||||||||||||||| Sbjct: 36926 gttggaggaagtgaaaattg 36907
>gb|AC115740.8| Mus musculus chromosome 3, clone RP23-476G18, complete sequence Length = 226125 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 atgcatacactttcttgttt 144 |||||||||||||||||||| Sbjct: 31380 atgcatacactttcttgttt 31399
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 gttggaggaagtgaaaattg 124 |||||||||||||||||||| Sbjct: 273316 gttggaggaagtgaaaattg 273297
>ref|NM_125187.3| Arabidopsis thaliana unknown protein AT5G58020 mRNA, complete cds Length = 1319 Score = 38.2 bits (19), Expect = 9.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 50 aattccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaactt 104 ||||||| || || || ||||||| ||| ||||| || |||||||||||| |||| Sbjct: 1148 aattcctgccgagaggaagtgacctgcaagagtaagtctccctgaaatcagactt 1094
>gb|AC160962.2| Mus musculus BAC clone RP24-308N16 from chromosome 13, complete sequence Length = 147866 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 91 ctgaaatcaaacttgttggagga 113 |||||||||||||||| |||||| Sbjct: 133666 ctgaaatcaaacttgtaggagga 133644
>gb|AC123605.8| Mus musculus chromosome 5, clone RP24-176O2, complete sequence Length = 211657 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 aattccttcccagggggag 68 ||||||||||||||||||| Sbjct: 125219 aattccttcccagggggag 125237
>ref|XM_946663.1| Trypanosoma brucei TREU927 adenosine transporter 2 (Tb927.2.6320) partial mRNA Length = 1389 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 tgttggaggaagtgaaaat 122 ||||||||||||||||||| Sbjct: 345 tgttggaggaagtgaaaat 363
>emb|CR974572.21| Pig DNA sequence from clone CH242-200F24 on chromosome 17, complete sequence Length = 137431 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 52 ttccttcccagggggagtgaccg 74 ||||| ||||||||||||||||| Sbjct: 76393 ttcctccccagggggagtgaccg 76415
>gb|BT010560.1| Arabidopsis thaliana At5g58020 gene, complete cds Length = 1065 Score = 38.2 bits (19), Expect = 9.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 50 aattccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaactt 104 ||||||| || || || ||||||| ||| ||||| || |||||||||||| |||| Sbjct: 1063 aattcctgccgagaggaagtgacctgcaagagtaagtctccctgaaatcagactt 1009
>gb|AC084859.7| Homo sapiens chromosome 11, clone CTC-497E21, complete sequence Length = 172345 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 tcacctccatgccattgga 30 ||||||||||||||||||| Sbjct: 123062 tcacctccatgccattgga 123080
>gb|AC134473.4| Mus musculus BAC clone RP23-190G18 from chromosome 3, complete sequence Length = 212795 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 120 aattgatgcatacactttcttgt 142 ||||| ||||||||||||||||| Sbjct: 130185 aattggtgcatacactttcttgt 130207
>gb|AC164439.4| Mus musculus BAC clone RP23-31B24 from chromosome 3, complete sequence Length = 206717 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 120 aattgatgcatacactttcttgt 142 ||||| ||||||||||||||||| Sbjct: 192431 aattggtgcatacactttcttgt 192409
>emb|CR936843.10| Mouse DNA sequence from clone RP23-270K2 on chromosome 4, complete sequence Length = 128921 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 109 gaggaagtgaaaattgatg 127 ||||||||||||||||||| Sbjct: 14716 gaggaagtgaaaattgatg 14734
>gb|AC104299.2| Homo sapiens chromosome 3 clone RP11-129K20, complete sequence Length = 181444 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 gtatgtttccctgaaatca 99 ||||||||||||||||||| Sbjct: 109724 gtatgtttccctgaaatca 109742
>gb|AY034579.1| Mus musculus cathepsin J (Ctsj) gene, complete cds Length = 19094 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 91 ctgaaatcaaacttgttggagga 113 |||||||||||||||| |||||| Sbjct: 17626 ctgaaatcaaacttgtaggagga 17648
>gb|AC013762.6| Homo sapiens, clone RP11-2I1, complete sequence Length = 144048 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 tcacctccatgccattgga 30 ||||||||||||||||||| Sbjct: 3116 tcacctccatgccattgga 3134
>gb|AC022113.6| Homo sapiens chromosome 5 clone CTC-461F20, complete sequence Length = 188570 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 tcaaacttgttggaggaag 115 ||||||||||||||||||| Sbjct: 59387 tcaaacttgttggaggaag 59369
>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete sequence Length = 182200 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 tcaaacttgttggaggaag 115 ||||||||||||||||||| Sbjct: 13168 tcaaacttgttggaggaag 13150
>emb|BX829734.1|CNS0A018 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB31ZH12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1223 Score = 38.2 bits (19), Expect = 9.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 50 aattccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaactt 104 ||||||| || || || ||| ||| ||| ||||| ||||||||||||||| |||| Sbjct: 1110 aattcctgccgagaggaagtcacctgcaagagtaagtttccctgaaatcagactt 1056
>emb|BX831485.1|CNS09ZJ1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS9ZD08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1293 Score = 38.2 bits (19), Expect = 9.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 50 aattccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaactt 104 ||||||| || || || ||||||| ||| ||||| || |||||||||||| |||| Sbjct: 1122 aattcctgccgagaggaagtgacctgcaagagtaagtctccctgaaatcagactt 1068
>dbj|AB024029.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19 Length = 41087 Score = 38.2 bits (19), Expect = 9.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 50 aattccttcccagggggagtgaccggcatgagtatgtttccctgaaatcaaactt 104 ||||||| || || || ||||||| ||| ||||| || |||||||||||| |||| Sbjct: 862 aattcctgccgagaggaagtgacctgcaagagtaagtctccctgaaatcagactt 808
>emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chromosome 14, complete sequence Length = 218673 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 aattccttcccagggggag 68 ||||||||||||||||||| Sbjct: 161489 aattccttcccagggggag 161471
>emb|AL844164.17| Mouse DNA sequence from clone RP23-300I3 on chromosome 4, complete sequence Length = 209214 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 109 gaggaagtgaaaattgatg 127 ||||||||||||||||||| Sbjct: 115436 gaggaagtgaaaattgatg 115454
>emb|AL731672.12| Mouse DNA sequence from clone RP23-161L11 on chromosome X, complete sequence Length = 232171 Score = 38.2 bits (19), Expect = 9.8 Identities = 28/31 (90%) Strand = Plus / Plus Query: 101 acttgttggaggaagtgaaaattgatgcata 131 |||||||||||||| || |||||||| |||| Sbjct: 94665 acttgttggaggaaatgcaaattgatacata 94695 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,848,342 Number of Sequences: 3902068 Number of extensions: 1848342 Number of successful extensions: 132535 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132408 Number of HSP's gapped (non-prelim): 127 length of query: 198 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 176 effective length of database: 17,147,199,772 effective search space: 3017907159872 effective search space used: 3017907159872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)