ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet22b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G6PI_TREPA (O83488) Glucose-6-phosphate isomerase (EC 5.3.1.9) (... 29 4.4
2KAT3_ARATH (P92960) Potassium channel KAT3 (AKT4) (AtKC1) (Potas... 29 4.4
3DOF53_ARATH (Q84TE9) Dof zinc finger protein DOF5.3 (AtDOF5.3) 29 5.8
4ASSY_SULAC (Q4J8F1) Argininosuccinate synthase (EC 6.3.4.5) (Cit... 29 5.8
5DNAJ_ACTAC (P77866) Chaperone protein dnaJ 28 9.9
6CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein ... 28 9.9

>G6PI_TREPA (O83488) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 535

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 105 VLVFDDGGLFRDLSNESLYLYILLSVGLEDHTWFL 1
           +LV   G     LSNE    ++L   GLE HT F+
Sbjct: 211 ILVSKSGTTLETLSNELFVAHVLRQAGLEPHTQFV 245



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>KAT3_ARATH (P92960) Potassium channel KAT3 (AKT4) (AtKC1) (Potassium channel|
           TKC)
          Length = 662

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 46  QVQRLI-AKITEQSSIIEHQNTTLSHNRNGRLSQQQRVGEERRVYTHG 186
           QVQ  + ++ T QS+  + +  T+S + NG++ +++R G  +RV  HG
Sbjct: 551 QVQETVQSEETPQSN--DEEIVTVSRHENGQIEERRREGVPKRVIIHG 596



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>DOF53_ARATH (Q84TE9) Dof zinc finger protein DOF5.3 (AtDOF5.3)|
          Length = 257

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 17  SSNPT--DNNMYKYNDSLLRSRNNPPSSNTKTPRCLTTEMAGC 139
           SSNPT  DN+  K + +   +R  PP    + PRC +T    C
Sbjct: 26  SSNPTPLDNDQKKPSPATAVTRPQPPELALRCPRCDSTNTKFC 68



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>ASSY_SULAC (Q4J8F1) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 391

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 143 NSKELGRRGEFTPMVTDLTSYN 208
           N K LGR+G+F+P   ++ SYN
Sbjct: 340 NMKILGRKGKFSPFSEEIASYN 361



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>DNAJ_ACTAC (P77866) Chaperone protein dnaJ|
          Length = 375

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 211 RIVACQICHHGCKLSSPPQLFAVETACHFC 122
           ++  C  CH   +L      F  E  CHFC
Sbjct: 158 KVETCPHCHGAGRLRRQQGFFVTEQPCHFC 187



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>CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)|
            (Microtubule-binding protein 190) (d-CLIP-190)
          Length = 1690

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 49   VQRLIAKITEQSSIIEHQNTTLSHN 123
            VQ L  K+ E SSIIE QNT L+ +
Sbjct: 1240 VQNLEEKVRESSSIIEAQNTKLNES 1264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,217,261
Number of Sequences: 219361
Number of extensions: 981150
Number of successful extensions: 2936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2930
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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