ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet21g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrin... 44 8e-05
2YP66_CAEEL (Q09215) Hypothetical protein B0495.6 28 4.5

>TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein|
           2.2) (OsTIP2.2)
          Length = 248

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -2

Query: 305 IWIYWXXXXXXXXXXXIVYRYLYMCDNHTPVASNDY 198
           IWIYW           +VYRY+YMC +H PVAS+++
Sbjct: 213 IWIYWVGPLVGGGLAGLVYRYVYMCGDHAPVASSEF 248



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>YP66_CAEEL (Q09215) Hypothetical protein B0495.6|
          Length = 87

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = +2

Query: 8   HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRH------SDHHARTFLCC--RRHHGN 163
           H++ Q+E H  SK Y  T +R EP+ M   ++ RH      S  +   +  C  R    N
Sbjct: 9   HVLAQLE-HLQSK-YTGTAMRHEPSRMDCESAPRHSRLSNVSSRNEHVYCRCGEREPSSN 66

Query: 164 QAPNDPSH 187
              +D SH
Sbjct: 67  PLQSDKSH 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,655,352
Number of Sequences: 219361
Number of extensions: 705108
Number of successful extensions: 1492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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