>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein; Coat|
            protein 1 (25 kDa protein) (CP-1); Coat protein 2 (26 kDa
            protein) (CP-2); Coat protein 3 (35 kDa protein) (CP-3);
            Putative helicase (EC 3.6.1.-) (Putative NTP-binding
            protei
          Length = 3471

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = -3

Query: 179  IGVVNAWACVPTQLPSIAKGIHIACKPLCYRLHWQAGFLAAAGQR 45
            I +  A   VPT       GIH     L YR+H   GF  AA  R
Sbjct: 2770 IELTEANVSVPTSYYEANGGIHTIISGLRYRVHCMPGFCGAAIMR 2814


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,754,269
Number of Sequences: 219361
Number of extensions: 489781
Number of successful extensions: 1279
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)