>gb|AC149676.2| Bos taurus  BAC CH240-43C16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 168416

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 64    aaaaaacctgcctgccaatgcaa 86
             |||||||||||||||||||||||
Sbjct: 57926 aaaaaacctgcctgccaatgcaa 57948

>gb|AC150881.4| Bos taurus  BAC CH240-354J15 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 174996

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 64     aaaaaacctgcctgccaatgcaa 86
              |||||||||||||||||||||||
Sbjct: 146001 aaaaaacctgcctgccaatgcaa 146023

>gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8) gene, complete cds;
             germline T-cell receptor beta DJC region genes, partial
             cds
          Length = 151480

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 63    caaaaaacctgcctgccaatgca 85
             |||||||||||||||||||||||
Sbjct: 68132 caaaaaacctgcctgccaatgca 68154

>gb|AY611008.1| Bos taurus clone 33E10 repeat region D6Z1
          Length = 8247

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 64   aaaaaacctgcctgccaatgca 85
            ||||||||||||||||||||||
Sbjct: 5948 aaaaaacctgcctgccaatgca 5969

>gb|AC150524.3| Bos taurus  BAC CH240-89P8 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 189720

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 64    aaaaaacctgcctgccaatgca 85
             ||||||||||||||||||||||
Sbjct: 33197 aaaaaacctgcctgccaatgca 33176

>gb|AC087843.2| Bos taurus clone RP42-550C12, complete sequence
          Length = 157165

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 64     aaaaaacctgcctgccaatgca 85
              ||||||||||||||||||||||
Sbjct: 156677 aaaaaacctgcctgccaatgca 156656

>gb|AC087860.2| Bos taurus clone RP42-135P2, complete sequence
          Length = 203696

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 64   aaaaaacctgcctgccaatgca 85
            ||||||||||||||||||||||
Sbjct: 9012 aaaaaacctgcctgccaatgca 8991

>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 64     aaaaaacctgcctgccaatgca 85
              ||||||||||||||||||||||
Sbjct: 599516 aaaaaacctgcctgccaatgca 599495



 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 68      aacctgcctgccaatgcaaa 87
               ||||||||||||||||||||
Sbjct: 1677175 aacctgcctgccaatgcaaa 1677156

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 55      gctgctgccaaaaaacctgcc 75
               |||||||||||||||||||||
Sbjct: 3798832 gctgctgccaaaaaacctgcc 3798812

>ref|XM_786299.1| PREDICTED: Strongylocentrotus purpuratus similar to prolyl
          endopeptidase-like (LOC586521), partial mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 51 gcctgctgctgccaaaaaacc 71
          |||||||||||||||||||||
Sbjct: 3  gcctgctgctgccaaaaaacc 23

>gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence
          Length = 177017

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    aaaaacctgcctgccaatgca 85
             |||||||||||||||||||||
Sbjct: 81677 aaaaacctgcctgccaatgca 81697

>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence
          Length = 169321

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     aacctgcctgccaatgcaaa 87
              ||||||||||||||||||||
Sbjct: 112648 aacctgcctgccaatgcaaa 112629

>gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence
          Length = 183383

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     aacctgcctgccaatgcaaa 87
              ||||||||||||||||||||
Sbjct: 156959 aacctgcctgccaatgcaaa 156940

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 53      ctgctgctgccaaaaaacct 72
               ||||||||||||||||||||
Sbjct: 5352565 ctgctgctgccaaaaaacct 5352546



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 9       acaaacaaaaaagggtctcgcaa 31
               ||||||||||||||||| |||||
Sbjct: 1671748 acaaacaaaaaagggtcgcgcaa 1671770

>emb|X95391.1|BTINRA206 B.taurus microsatellite INRA206 DNA
          Length = 508

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  aacctgcctgccaatgcaaa 87
           ||||||||||||||||||||
Sbjct: 445 aacctgcctgccaatgcaaa 464

>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    ctgctgctgccaaaaaacct 72
             ||||||||||||||||||||
Sbjct: 58733 ctgctgctgccaaaaaacct 58714

>emb|AL445463.8| Human DNA sequence from clone RP11-264H19 on chromosome 10 Contains
             part of the BTRC gene for beta-transducin repeat
             containing, complete sequence
          Length = 143078

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   acaccaatctaaaaatcagt 191
             ||||||||||||||||||||
Sbjct: 10464 acaccaatctaaaaatcagt 10445

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 53      ctgctgctgccaaaaaacct 72
               ||||||||||||||||||||
Sbjct: 5351780 ctgctgctgccaaaaaacct 5351761



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 9       acaaacaaaaaagggtctcgcaa 31
               ||||||||||||||||| |||||
Sbjct: 1671746 acaaacaaaaaagggtcgcgcaa 1671768

>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    ctgctgctgccaaaaaacct 72
             ||||||||||||||||||||
Sbjct: 82880 ctgctgctgccaaaaaacct 82861

>emb|CT009721.14| Mouse DNA sequence from clone RP23-130L13 on chromosome 9, complete
             sequence
          Length = 50450

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   gtaggtacacatgcccatgc 164
             ||||||||||||||||||||
Sbjct: 21698 gtaggtacacatgcccatgc 21679

>gb|AC102290.7| Mus musculus chromosome 3, clone RP24-359J7, complete sequence
          Length = 175819

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    cttccttctttggcctgct 57
             |||||||||||||||||||
Sbjct: 55421 cttccttctttggcctgct 55403

>gb|AC150650.5| Bos taurus  BAC CH240-447L3 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 148126

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 63    caaaaaacctgcctgccaatgca 85
             |||| ||||||||||||||||||
Sbjct: 23499 caaagaacctgcctgccaatgca 23477

>gb|AC150593.2| Bos taurus  BAC CH240-105D16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 151783

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    aacctgcctgccaatgcaa 86
             |||||||||||||||||||
Sbjct: 59028 aacctgcctgccaatgcaa 59046

>ref|XM_607344.2| PREDICTED: Bos taurus similar to Solute carrier family 12 member 1
           (Bumetanide-sensitive sodium-(potassium)-chloride
           cotransporter 2) (Kidney-specific Na-K-Cl symporter)
           (LOC528908), mRNA
          Length = 1119

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 167 tgacaacaccaatctaaaaatca 189
           ||||||||||||||| |||||||
Sbjct: 253 tgacaacaccaatctcaaaatca 231

>ref|XM_611863.2| PREDICTED: Bos taurus similar to Solute carrier family 12 member 1
            (Bumetanide-sensitive sodium-(potassium)-chloride
            cotransporter 2) (Kidney-specific Na-K-Cl symporter),
            transcript variant 1 (LOC532707), mRNA
          Length = 3426

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 167  tgacaacaccaatctaaaaatca 189
            ||||||||||||||| |||||||
Sbjct: 2565 tgacaacaccaatctcaaaatca 2543

>gb|AY260143.1| Bos taurus prostaglandin G/H synthase 2 gene, flanking region and
           partial 5'UTR
          Length = 3932

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 63  caaaaaacctgcctgccaatgca 85
           |||| ||||||||||||||||||
Sbjct: 362 caaacaacctgcctgccaatgca 384

>gb|AF529305.2| Bubalus bubalis alpha s1 casein gene, promoter region, exon 1, and
           intron 1
          Length = 2246

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 63  caaaaaacctgcctgccaatgca 85
           |||| ||||||||||||||||||
Sbjct: 656 caaagaacctgcctgccaatgca 634

>emb|CR751227.13| Zebrafish DNA sequence from clone DKEY-178D9 in linkage group 3,
             complete sequence
          Length = 114387

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 51    gcctgctgctgccaaaaaacctg 73
             ||||||||||||||| |||||||
Sbjct: 51358 gcctgctgctgccaagaaacctg 51336

>gb|AY644518.1| Bos taurus T cell receptor gamma gene, partial sequence
          Length = 188109

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    aacctgcctgccaatgcaa 86
             |||||||||||||||||||
Sbjct: 54041 aacctgcctgccaatgcaa 54023

>gb|AC158307.5| Mus musculus chromosome 3, clone RP23-148J20, complete sequence
          Length = 204891

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     cttccttctttggcctgct 57
              |||||||||||||||||||
Sbjct: 161285 cttccttctttggcctgct 161303

>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 9     acaaacaaaaaagggtctcgcaa 31
             ||||||||||||||||| |||||
Sbjct: 79940 acaaacaaaaaagggtcgcgcaa 79962

>emb|AL645782.2| Zebrafish DNA sequence from clone BUSM1-254O17 in linkage group 3
              Contains the hoxb1a, hoxb2a, hoxb3a, hoxb4a, hoxb5a,
              hoxb6a, hoxb7a and hob8a genes and three CpG islands,
              complete sequence
          Length = 119385

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 51     gcctgctgctgccaaaaaacctg 73
              ||||||||||||||| |||||||
Sbjct: 104759 gcctgctgctgccaagaaacctg 104781

>emb|AL645569.21| Mouse DNA sequence from clone RP23-96I9 on chromosome 11 Contains the
             5' end of the gene for a novel protein similar to rat
             rabphilin-3a related protein, two novel genes and two CpG
             islands, complete sequence
          Length = 131144

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     acaaacaaaaaagggtctc 27
             |||||||||||||||||||
Sbjct: 10328 acaaacaaaaaagggtctc 10310

>gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 208686

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 33     ccaggtcttccttctttggcctg 55
              ||||||||||||||||| |||||
Sbjct: 118871 ccaggtcttccttcttttgcctg 118849

>gb|AC079317.25| Homo sapiens 12 BAC RP11-4K23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147862

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 33     ccaggtcttccttctttggcctg 55
              ||||||||||||||||| |||||
Sbjct: 108239 ccaggtcttccttcttttgcctg 108217

>gb|AC004811.2|AC004811 Homo sapiens clone 162B15, complete sequence
          Length = 62836

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 33    ccaggtcttccttctttggcctg 55
             ||||||||||||||||| |||||
Sbjct: 33836 ccaggtcttccttcttttgcctg 33814

>emb|AJ309196.1|OSA309196 Oryza sativa snoRNA gene cluster III (Z103a, Z103b, Z103c, Z103d)
          Length = 780

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 9   acaaacaaaaaagggtctcgcaa 31
           ||||||||||||||||| |||||
Sbjct: 331 acaaacaaaaaagggtcgcgcaa 353

>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 9     acaaacaaaaaagggtctcgcaa 31
             ||||||||||||||||| |||||
Sbjct: 84211 acaaacaaaaaagggtcgcgcaa 84233


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,275,561
Number of Sequences: 3902068
Number of extensions: 2275561
Number of successful extensions: 163309
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162924
Number of HSP's gapped (non-prelim): 385
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)