| Clone Name | rbaet21e08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 729 bits (368), Expect = 0.0 Identities = 371/372 (99%) Strand = Plus / Minus Query: 1 gaggaatatgtaaaaattcatttatacatagaagactcgttcaggcaaccaccgagaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 768 gaggaatatgtaaaaattcatttatacatagaagactcgttcaggcaaccaccgagaaga 709 Query: 61 gatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaagaagta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 708 gatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaagaagta 649 Query: 121 tgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgccgaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 648 tgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgccgaa 589 Query: 181 aaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcctcctt 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 588 gaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcctcctt 529 Query: 241 cttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaaggaggc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 528 cttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaaggaggc 469 Query: 301 gacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccgagtgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 468 gacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccgagtgt 409 Query: 361 gccggcctgtcc 372 |||||||||||| Sbjct: 408 gccggcctgtcc 397
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 289 bits (146), Expect = 3e-75 Identities = 236/266 (88%) Strand = Plus / Minus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13161324 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13161323 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13161264 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 13161263 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13161204 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13161203 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13161144 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 13161143 cctgcggcgccgagggcgccggcctg 13161118
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 289 bits (146), Expect = 3e-75 Identities = 236/266 (88%) Strand = Plus / Minus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 509 cctgcggcgccgagggcgccggcctg 484
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 289 bits (146), Expect = 3e-75 Identities = 236/266 (88%) Strand = Plus / Minus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 640 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 639 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 580 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 579 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 520 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 519 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 460 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 459 cctgcggcgccgagggcgccggcctg 434
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 289 bits (146), Expect = 3e-75 Identities = 236/266 (88%) Strand = Plus / Minus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 662 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 661 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 602 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 601 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 542 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 541 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 482 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 481 cctgcggcgccgagggcgccggcctg 456
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 289 bits (146), Expect = 3e-75 Identities = 236/266 (88%) Strand = Plus / Minus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 509 cctgcggcgccgagggcgccggcctg 484
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 289 bits (146), Expect = 3e-75 Identities = 236/266 (88%) Strand = Plus / Minus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13115599 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13115598 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13115539 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 13115538 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13115479 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13115478 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13115419 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 13115418 cctgcggcgccgagggcgccggcctg 13115393
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 289 bits (146), Expect = 3e-75 Identities = 236/266 (88%) Strand = Plus / Plus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 169418 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 169419 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 169478 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 169479 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 169538 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 169539 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 169598 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 169599 cctgcggcgccgagggcgccggcctg 169624
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 289 bits (146), Expect = 3e-75 Identities = 236/266 (88%) Strand = Plus / Minus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 150527 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 150526 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 150467 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 150466 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 150407 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 150406 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 150347 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 150346 cctgcggcgccgagggcgccggcctg 150321
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 281 bits (142), Expect = 8e-73 Identities = 235/266 (88%) Strand = Plus / Minus Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163 ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | || Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacg 645 Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223 ||||| | |||||||| |||||||| |||||||||| | ||| || ||||||||||| Sbjct: 644 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 585 Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 584 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 525 Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 524 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 465 Query: 344 ccgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 464 cctgcggcgccgagggcgccggcctg 439
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 256 bits (129), Expect = 4e-65 Identities = 231/265 (87%) Strand = Plus / Minus Query: 105 tctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgc 164 |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||| Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgc 1440 Query: 165 cggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgga 224 |||| | |||||||| ||||| || |||||||||| | ||| || ||||||||||| | Sbjct: 1439 cggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgca 1380 Query: 225 gcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgc 284 ||||||||||||||||||| | |||||||| |||||| ||||| |||||||| || | Sbjct: 1379 gcttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtccc 1320 Query: 285 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtc 344 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 1319 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggc 1260 Query: 345 cgatggcgccgagtgtgccggcctg 369 || ||||||||| | ||||||||| Sbjct: 1259 cggcggcgccgagcgcgccggcctg 1235
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 77.8 bits (39), Expect = 2e-11 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 105 tctacttgaagaagtatgggaggtcgagc-acgtagaggaggaagtatgcccaga 158 |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| Sbjct: 109 tctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55
>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds Length = 812 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 103 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 158 ||||||||||| | |||| |||||||| | || |||||||||||||||||||||| Sbjct: 737 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682
>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of photosystem I, complete cds Length = 811 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 103 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 158 ||||||||||| | |||| |||||||| | || |||||||||||||||||||||| Sbjct: 674 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 211 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 252 ||||||||| ||||||| ||||| |||||||||||| ||||| Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 aaattcatttatacatagaaga 35 |||||||||||||||||||||| Sbjct: 5987801 aaattcatttatacatagaaga 5987780
>emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013J13, complete sequence Length = 137572 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 aaattcatttatacatagaaga 35 |||||||||||||||||||||| Sbjct: 11198 aaattcatttatacatagaaga 11177
>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17, complete sequence Length = 137981 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 aaattcatttatacatagaaga 35 |||||||||||||||||||||| Sbjct: 131038 aaattcatttatacatagaaga 131017
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 atatgtaaaaattcatttata 26 ||||||||||||||||||||| Sbjct: 41414 atatgtaaaaattcatttata 41394
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaact 200 ||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640
>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence Length = 140426 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 atatgtaaaaattcatttata 26 ||||||||||||||||||||| Sbjct: 41414 atatgtaaaaattcatttata 41394
>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl carrier protein, asparagine synthase homolog, complete cds Length = 5188 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 ccggcgcggtggacggctcgc 284 ||||||||||||||||||||| Sbjct: 2273 ccggcgcggtggacggctcgc 2293
>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA Length = 1067 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgaggcagacgctgaggatg 334 |||||||||||||||||||| Sbjct: 297 tgaggcagacgctgaggatg 316
>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence Length = 225152 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 taaaaattcatttatacatagaag 34 ||||||||||||||| |||||||| Sbjct: 218092 taaaaattcatttatccatagaag 218069
>gb|AC124513.3| Mus musculus BAC clone RP23-448C3 from chromosome 19, complete sequence Length = 202236 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 taaaaattcatttatacatagaag 34 ||||||||||||||| |||||||| Sbjct: 11868 taaaaattcatttatccatagaag 11845
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 aatctacttgaagaagtatg 122 |||||||||||||||||||| Sbjct: 143165 aatctacttgaagaagtatg 143184
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 ttcggcggtctggagcttgtcggc 234 |||||||| ||||||||||||||| Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948
>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the 3' end of the ACO2 gene for mitochondrial aconitase 2, the gene for a novel protein similar to yeast DNA-directed RNA Polymerase III 25 kD Polypeptide, the gene for the human ortholog of rat Pippin, the PMM1 gene for phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and two novel genes. Contains ESTs, STSs, GSSs and two putative CpG islands, complete sequence Length = 107818 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 agaggaggaagtatgcccag 157 |||||||||||||||||||| Sbjct: 64984 agaggaggaagtatgcccag 65003
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 attaatctacttgaagaagt 119 |||||||||||||||||||| Sbjct: 781146 attaatctacttgaagaagt 781165
>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031), complete cds Length = 1067 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgaggcagacgctgaggatg 334 |||||||||||||||||||| Sbjct: 297 tgaggcagacgctgaggatg 316
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tcgtacatgcatgccaccta 100 |||||||||||||||||||| Sbjct: 81350 tcgtacatgcatgccaccta 81369
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 aatctacttgaagaagtatg 122 |||||||||||||||||||| Sbjct: 121761 aatctacttgaagaagtatg 121780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,789,032 Number of Sequences: 3902068 Number of extensions: 2789032 Number of successful extensions: 49894 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49762 Number of HSP's gapped (non-prelim): 131 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)