ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet21e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L... 729 0.0
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 289 3e-75
3dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 3e-75
4dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 3e-75
5dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 3e-75
6dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 3e-75
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 289 3e-75
8emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 289 3e-75
9emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 289 3e-75
10dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 8e-73
11gb|AY103985.1| Zea mays PCO103239 mRNA sequence 256 4e-65
12emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment ... 78 2e-11
13dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds 56 8e-05
14dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mR... 56 8e-05
15dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I... 52 0.001
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
17emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4,... 44 0.32
18emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4,... 44 0.32
19gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 42 1.3
20emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photo... 42 1.3
21gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete se... 42 1.3
22dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG... 42 1.3
23ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA 40 5.0
24gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosom... 40 5.0
25gb|AC124513.3| Mus musculus BAC clone RP23-448C3 from chromosome... 40 5.0
26gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complet... 40 5.0
27gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.0
28emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13... 40 5.0
29gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 5.0
30gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:1233... 40 5.0
31gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3... 40 5.0
32emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on ch... 40 5.0

>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds
          Length = 777

 Score =  729 bits (368), Expect = 0.0
 Identities = 371/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggaatatgtaaaaattcatttatacatagaagactcgttcaggcaaccaccgagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaggaatatgtaaaaattcatttatacatagaagactcgttcaggcaaccaccgagaaga 709

                                                                       
Query: 61  gatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaagaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaagaagta 649

                                                                       
Query: 121 tgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgccgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgccgaa 589

                                                                       
Query: 181 aaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcctcctt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcctcctt 529

                                                                       
Query: 241 cttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaaggaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaaggaggc 469

                                                                       
Query: 301 gacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccgagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccgagtgt 409

                       
Query: 361 gccggcctgtcc 372
           ||||||||||||
Sbjct: 408 gccggcctgtcc 397



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  289 bits (146), Expect = 3e-75
 Identities = 236/266 (88%)
 Strand = Plus / Minus

                                                                            
Query: 104      atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
                ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13161324

                                                                            
Query: 164      ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
                ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 13161323 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13161264

                                                                            
Query: 224      agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
                ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 13161263 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13161204

                                                                            
Query: 284      ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
                ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 13161203 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13161144

                                          
Query: 344      ccgatggcgccgagtgtgccggcctg 369
                ||   ||||||||| | |||||||||
Sbjct: 13161143 cctgcggcgccgagggcgccggcctg 13161118



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>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full
           insert sequence
          Length = 923

 Score =  289 bits (146), Expect = 3e-75
 Identities = 236/266 (88%)
 Strand = Plus / Minus

                                                                       
Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690

                                                                       
Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
           ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630

                                                                       
Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570

                                                                       
Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510

                                     
Query: 344 ccgatggcgccgagtgtgccggcctg 369
           ||   ||||||||| | |||||||||
Sbjct: 509 cctgcggcgccgagggcgccggcctg 484



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>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full
           insert sequence
          Length = 932

 Score =  289 bits (146), Expect = 3e-75
 Identities = 236/266 (88%)
 Strand = Plus / Minus

                                                                       
Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 640

                                                                       
Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
           ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 639 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 580

                                                                       
Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 579 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 520

                                                                       
Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 519 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 460

                                     
Query: 344 ccgatggcgccgagtgtgccggcctg 369
           ||   ||||||||| | |||||||||
Sbjct: 459 cctgcggcgccgagggcgccggcctg 434



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>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full
           insert sequence
          Length = 985

 Score =  289 bits (146), Expect = 3e-75
 Identities = 236/266 (88%)
 Strand = Plus / Minus

                                                                       
Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 662

                                                                       
Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
           ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 661 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 602

                                                                       
Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 601 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 542

                                                                       
Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 541 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 482

                                     
Query: 344 ccgatggcgccgagtgtgccggcctg 369
           ||   ||||||||| | |||||||||
Sbjct: 481 cctgcggcgccgagggcgccggcctg 456



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>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full
           insert sequence
          Length = 923

 Score =  289 bits (146), Expect = 3e-75
 Identities = 236/266 (88%)
 Strand = Plus / Minus

                                                                       
Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690

                                                                       
Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
           ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630

                                                                       
Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570

                                                                       
Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510

                                     
Query: 344 ccgatggcgccgagtgtgccggcctg 369
           ||   ||||||||| | |||||||||
Sbjct: 509 cctgcggcgccgagggcgccggcctg 484



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  289 bits (146), Expect = 3e-75
 Identities = 236/266 (88%)
 Strand = Plus / Minus

                                                                            
Query: 104      atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
                ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13115599

                                                                            
Query: 164      ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
                ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 13115598 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13115539

                                                                            
Query: 224      agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
                ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 13115538 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13115479

                                                                            
Query: 284      ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
                ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 13115478 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13115419

                                          
Query: 344      ccgatggcgccgagtgtgccggcctg 369
                ||   ||||||||| | |||||||||
Sbjct: 13115418 cctgcggcgccgagggcgccggcctg 13115393



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>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 193499

 Score =  289 bits (146), Expect = 3e-75
 Identities = 236/266 (88%)
 Strand = Plus / Plus

                                                                          
Query: 104    atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
              ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 169418

                                                                          
Query: 164    ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
              ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 169419 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 169478

                                                                          
Query: 224    agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
              ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 169479 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 169538

                                                                          
Query: 284    ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
              ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 169539 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 169598

                                        
Query: 344    ccgatggcgccgagtgtgccggcctg 369
              ||   ||||||||| | |||||||||
Sbjct: 169599 cctgcggcgccgagggcgccggcctg 169624



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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178827

 Score =  289 bits (146), Expect = 3e-75
 Identities = 236/266 (88%)
 Strand = Plus / Minus

                                                                          
Query: 104    atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
              ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 150527

                                                                          
Query: 164    ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
              ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 150526 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 150467

                                                                          
Query: 224    agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
              ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 150466 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 150407

                                                                          
Query: 284    ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
              ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 150406 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 150347

                                        
Query: 344    ccgatggcgccgagtgtgccggcctg 369
              ||   ||||||||| | |||||||||
Sbjct: 150346 cctgcggcgccgagggcgccggcctg 150321



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>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full
           insert sequence
          Length = 964

 Score =  281 bits (142), Expect = 8e-73
 Identities = 235/266 (88%)
 Strand = Plus / Minus

                                                                       
Query: 104 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 163
           ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | ||
Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacg 645

                                                                       
Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgg 223
           ||||| |  |||||||| |||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 644 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 585

                                                                       
Query: 224 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 283
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 584 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 525

                                                                       
Query: 284 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 343
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 524 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 465

                                     
Query: 344 ccgatggcgccgagtgtgccggcctg 369
           ||   ||||||||| | |||||||||
Sbjct: 464 cctgcggcgccgagggcgccggcctg 439



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>gb|AY103985.1| Zea mays PCO103239 mRNA sequence
          Length = 1657

 Score =  256 bits (129), Expect = 4e-65
 Identities = 231/265 (87%)
 Strand = Plus / Minus

                                                                        
Query: 105  tctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgc 164
            |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||   |||
Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgc 1440

                                                                        
Query: 165  cggatacaccgccgaaaaagaagcctccggtgaactgcgaccacccttcggcggtctgga 224
            |||| |  |||||||| ||||| || ||||||||||  | ||| || ||||||||||| |
Sbjct: 1439 cggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgca 1380

                                                                        
Query: 225  gcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgc 284
            ||||||||||||||||||| |  |||||||| ||||||   ||||| |||||||| || |
Sbjct: 1379 gcttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtccc 1320

                                                                        
Query: 285  cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtc 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 1319 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggc 1260

                                     
Query: 345  cgatggcgccgagtgtgccggcctg 369
            ||  ||||||||| | |||||||||
Sbjct: 1259 cggcggcgccgagcgcgccggcctg 1235



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>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F
          Length = 162

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 52/55 (94%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                  
Query: 105 tctacttgaagaagtatgggaggtcgagc-acgtagaggaggaagtatgcccaga 158
           |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct: 109 tctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55



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>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds
          Length = 812

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 103 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 158
           ||||||||||| | |||| |||||||| |  || ||||||||||||||||||||||
Sbjct: 737 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682



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>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of
           photosystem I, complete cds
          Length = 811

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 103 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 158
           ||||||||||| | |||| |||||||| |  || ||||||||||||||||||||||
Sbjct: 674 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619



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>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial
           cds
          Length = 404

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 211 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 252
           ||||||||| ||||||| ||||| |||||||||||| |||||
Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 14      aaattcatttatacatagaaga 35
               ||||||||||||||||||||||
Sbjct: 5987801 aaattcatttatacatagaaga 5987780



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>emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013J13,
             complete sequence
          Length = 137572

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 14    aaattcatttatacatagaaga 35
             ||||||||||||||||||||||
Sbjct: 11198 aaattcatttatacatagaaga 11177



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>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17,
              complete sequence
          Length = 137981

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 14     aaattcatttatacatagaaga 35
              ||||||||||||||||||||||
Sbjct: 131038 aaattcatttatacatagaaga 131017



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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     atatgtaaaaattcatttata 26
             |||||||||||||||||||||
Sbjct: 41414 atatgtaaaaattcatttata 41394



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>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction
           center
          Length = 834

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 164 ccggatacaccgccgaaaaagaagcctccggtgaact 200
           ||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640



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>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence
          Length = 140426

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     atatgtaaaaattcatttata 26
             |||||||||||||||||||||
Sbjct: 41414 atatgtaaaaattcatttata 41394



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>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for
            beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl
            carrier protein, asparagine synthase homolog, complete
            cds
          Length = 5188

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 264  ccggcgcggtggacggctcgc 284
            |||||||||||||||||||||
Sbjct: 2273 ccggcgcggtggacggctcgc 2293



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>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA
          Length = 1067

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 tgaggcagacgctgaggatg 334
           ||||||||||||||||||||
Sbjct: 297 tgaggcagacgctgaggatg 316



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>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence
          Length = 225152

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 11     taaaaattcatttatacatagaag 34
              ||||||||||||||| ||||||||
Sbjct: 218092 taaaaattcatttatccatagaag 218069



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>gb|AC124513.3| Mus musculus BAC clone RP23-448C3 from chromosome 19, complete sequence
          Length = 202236

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    taaaaattcatttatacatagaag 34
             ||||||||||||||| ||||||||
Sbjct: 11868 taaaaattcatttatccatagaag 11845



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>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence
          Length = 161199

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    aatctacttgaagaagtatg 122
              ||||||||||||||||||||
Sbjct: 143165 aatctacttgaagaagtatg 143184



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 211     ttcggcggtctggagcttgtcggc 234
               |||||||| |||||||||||||||
Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948



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>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the
             3' end of the ACO2 gene for mitochondrial aconitase 2, the
             gene for a novel protein similar to yeast DNA-directed RNA
             Polymerase III 25 kD  Polypeptide, the gene for the human
             ortholog of rat Pippin, the PMM1 gene for
             phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and
             two novel genes. Contains ESTs, STSs, GSSs and  two
             putative CpG islands, complete sequence
          Length = 107818

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   agaggaggaagtatgcccag 157
             ||||||||||||||||||||
Sbjct: 64984 agaggaggaagtatgcccag 65003



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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    attaatctacttgaagaagt 119
              ||||||||||||||||||||
Sbjct: 781146 attaatctacttgaagaagt 781165



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>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031),
           complete cds
          Length = 1067

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 tgaggcagacgctgaggatg 334
           ||||||||||||||||||||
Sbjct: 297 tgaggcagacgctgaggatg 316



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>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence
          Length = 189097

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tcgtacatgcatgccaccta 100
             ||||||||||||||||||||
Sbjct: 81350 tcgtacatgcatgccaccta 81369



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>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete
              sequence
          Length = 209560

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    aatctacttgaagaagtatg 122
              ||||||||||||||||||||
Sbjct: 121761 aatctacttgaagaagtatg 121780


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,789,032
Number of Sequences: 3902068
Number of extensions: 2789032
Number of successful extensions: 49894
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49762
Number of HSP's gapped (non-prelim): 131
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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