ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet21d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX901942.6| Zebrafish DNA sequence from clone DKEY-121B10 in... 42 1.4
2ref|XM_477217.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
3gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, comple... 40 5.7
4gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig co... 40 5.7
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
6emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in l... 40 5.7
7dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
8dbj|AP005194.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
9dbj|AK103504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
10dbj|AP002027.1| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 5.7

>emb|BX901942.6| Zebrafish DNA sequence from clone DKEY-121B10 in linkage group 1,
             complete sequence
          Length = 166521

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   aatatcatgcagcactaaacc 302
             |||||||||||||||||||||
Sbjct: 67817 aatatcatgcagcactaaacc 67837



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   aatatcatgcagcactaaacc 207
             |||||||||||||||||||||
Sbjct: 67817 aatatcatgcagcactaaacc 67837



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>ref|XM_477217.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3755

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   caaatgtatattgatttaag 48
            ||||||||||||||||||||
Sbjct: 2430 caaatgtatattgatttaag 2449



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>gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, complete sequence
          Length = 211931

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     agcaaagctcaccccaaatg 34
              ||||||||||||||||||||
Sbjct: 115364 agcaaagctcaccccaaatg 115383



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>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
              cluster, cholinesterase, and COLP5alpha genes, complete
              sequence
          Length = 796348

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     aaatgtatattgatttaagc 49
              ||||||||||||||||||||
Sbjct: 129332 aaatgtatattgatttaagc 129313



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 29      caaatgtatattgatttaag 48
               ||||||||||||||||||||
Sbjct: 7787607 caaatgtatattgatttaag 7787588



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>emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in linkage group 3, complete
              sequence
          Length = 272769

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     aaatgtatattgatttaagc 49
              ||||||||||||||||||||
Sbjct: 160975 aaatgtatattgatttaagc 160994



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>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0523A04
          Length = 149049

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    caaatgtatattgatttaag 48
             ||||||||||||||||||||
Sbjct: 36605 caaatgtatattgatttaag 36586



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>dbj|AP005194.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0565A07
          Length = 152191

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     caaatgtatattgatttaag 48
              ||||||||||||||||||||
Sbjct: 131696 caaatgtatattgatttaag 131677



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>dbj|AK103504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131D01, full
            insert sequence
          Length = 3755

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   caaatgtatattgatttaag 48
            ||||||||||||||||||||
Sbjct: 2430 caaatgtatattgatttaag 2449



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>dbj|AP002027.1| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:496L13, complete
             sequence
          Length = 182676

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ccccaaatgtatattgattt 45
             ||||||||||||||||||||
Sbjct: 71158 ccccaaatgtatattgattt 71177


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,567,293
Number of Sequences: 3902068
Number of extensions: 3567293
Number of successful extensions: 60906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60884
Number of HSP's gapped (non-prelim): 22
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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