>emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31BHv protein
          Length = 1139

 Score =  603 bits (304), Expect = e-169
 Identities = 327/337 (97%)
 Strand = Plus / Minus

                                                                        
Query: 52   aaaagttgaactcatggtattgacaagaaattaacatgattacaccagcagcgaacgaaa 111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 aaaagttgaactcatggtattgacaagaaattaacatgattacaccagcagcgaacgaaa 1074

                                                                        
Query: 112  gcatgnnnnnnntatgggatgggaggagagccagcatcaggaggctaatgcgggagtttc 171
            |||||       ||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1073 gcatgaaaaaaatatgggatgggaggagagccaccatcgggaggctaatgcgggagtttc 1014

                                                                        
Query: 172  aagtggtgacatgcttcagtcttctgcagtaacatttcagcagtgttcccatgtgtccac 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 aagtggtgacatgcttcagtcttctgcagtaacatttcagcagtgttcccatgtgtccac 954

                                                                        
Query: 232  gagaaacgccaagccatgctctccgccgctgcgccgcatcagaaccctcgctgtggtctc 291
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 953  gagaaacgccaagccatgctctccgccgctgcaccgcatcagaaccctcgctgtggtctc 894

                                                                        
Query: 292  tctgctgcaacgttcactcggagtgggcggccatccatctcctgtccatcaagcgctgaa 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  tctgctgcaacgttcactcggagtgggcggccatccatctcctgtccatcaagcgctgaa 834

                                                 
Query: 352  atagcactgtcaagatcctcctttgaagccatagtta 388
            |||||||||||||||||||||||||||||||||||||
Sbjct: 833  atagcactgtcaagatcctcctttgaagccatagtta 797

>ref|XM_483744.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 927

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 277 cctcgctgtggtctctctgctgcaacgttcactcggagtgggcggccatccatctcctgt 336
           ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||  ||||||
Sbjct: 600 cctcgctgtggtcgctcagctgccacattcactcgaagtgggcggccatccaattcctgt 541

                                
Query: 337 ccatcaagcgctgaaatagca 357
           |||||||| || |||||||||
Sbjct: 540 ccatcaagggcagaaatagca 520

>ref|XM_483743.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1233

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 277 cctcgctgtggtctctctgctgcaacgttcactcggagtgggcggccatccatctcctgt 336
           ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||  ||||||
Sbjct: 981 cctcgctgtggtcgctcagctgccacattcactcgaagtgggcggccatccaattcctgt 922

                                
Query: 337 ccatcaagcgctgaaatagca 357
           |||||||| || |||||||||
Sbjct: 921 ccatcaagggcagaaatagca 901

>ref|XM_507331.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1150_A11.19-2
           mRNA
          Length = 1302

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 277 cctcgctgtggtctctctgctgcaacgttcactcggagtgggcggccatccatctcctgt 336
           ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||  ||||||
Sbjct: 975 cctcgctgtggtcgctcagctgccacattcactcgaagtgggcggccatccaattcctgt 916

                                
Query: 337 ccatcaagcgctgaaatagca 357
           |||||||| || |||||||||
Sbjct: 915 ccatcaagggcagaaatagca 895

>dbj|AK105901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F09, full
           insert sequence
          Length = 1230

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 277 cctcgctgtggtctctctgctgcaacgttcactcggagtgggcggccatccatctcctgt 336
           ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||  ||||||
Sbjct: 978 cctcgctgtggtcgctcagctgccacattcactcgaagtgggcggccatccaattcctgt 919

                                
Query: 337 ccatcaagcgctgaaatagca 357
           |||||||| || |||||||||
Sbjct: 918 ccatcaagggcagaaatagca 898

>dbj|AK101214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031B04, full
           insert sequence
          Length = 927

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 277 cctcgctgtggtctctctgctgcaacgttcactcggagtgggcggccatccatctcctgt 336
           ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||  ||||||
Sbjct: 600 cctcgctgtggtcgctcagctgccacattcactcgaagtgggcggccatccaattcctgt 541

                                
Query: 337 ccatcaagcgctgaaatagca 357
           |||||||| || |||||||||
Sbjct: 540 ccatcaagggcagaaatagca 520

>dbj|AK070743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062K14, full
           insert sequence
          Length = 1302

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 277 cctcgctgtggtctctctgctgcaacgttcactcggagtgggcggccatccatctcctgt 336
           ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||  ||||||
Sbjct: 975 cctcgctgtggtcgctcagctgccacattcactcgaagtgggcggccatccaattcctgt 916

                                
Query: 337 ccatcaagcgctgaaatagca 357
           |||||||| || |||||||||
Sbjct: 915 ccatcaagggcagaaatagca 895

>gb|AY108263.1| Zea mays PCO100700 mRNA sequence
          Length = 891

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 265 ccgcatcagaaccctcgctgtggtctctctgctgcaacgttcactcggagtgggcggcca 324
           |||||||| || || | |||||| | |||||||||||| |||||||| || |||||||| 
Sbjct: 616 ccgcatcaaaagcccctctgtggccgctctgctgcaacattcactcgaagagggcggccg 557

                                            
Query: 325 tccatctcctgtccatcaagcgctgaaatagca 357
           ||||  ||||||||||| || || |||||||||
Sbjct: 556 tccaattcctgtccatctagggccgaaatagca 524

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                    
Query: 277      cctcgctgtggtctctctgctgcaacgttcactcggagtgggcggccatcca 328
                ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||
Sbjct: 27873352 cctcgctgtggtcgctcagctgccacattcactcgaagtgggcggccatcca 27873403

>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 277   cctcgctgtggtctctctgctgcaacgttcactcggagtgggcggccatcca 328
             ||||||||||||| ||| ||||| || |||||||| ||||||||||||||||
Sbjct: 81430 cctcgctgtggtcgctcagctgccacattcactcgaagtgggcggccatcca 81481

>gb|AC013410.5| Homo sapiens BAC clone RP11-495I2 from 2, complete sequence
          Length = 200900

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 18     agaacactagggcatcattacagtagcct 46
              |||||||||||||  ||||||||||||||
Sbjct: 170126 agaacactagggctgcattacagtagcct 170154

>gb|AC092614.2| Homo sapiens BAC clone RP11-192M8 from 2, complete sequence
          Length = 106992

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 62   ctcatggtattgacaagaaattaac 86
            |||||||| ||||||||||||||||
Sbjct: 5863 ctcatggttttgacaagaaattaac 5887

>gb|AC092380.4| Homo sapiens chromosome 16 clone RP11-727M7, complete sequence
          Length = 167071

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 45     ctacttgaaaagttgaactca 65
              |||||||||||||||||||||
Sbjct: 141210 ctacttgaaaagttgaactca 141190

>gb|AY107260.1| Zea mays PCO071008 mRNA sequence
          Length = 737

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 244 gccatgctctccgccgctgcg 264
           |||||||||||||||||||||
Sbjct: 62  gccatgctctccgccgctgcg 82

>gb|AY022079.1| Oryza sativa microsatellite MRG4404 containing (TC)X15, closest to
           marker R3324, genomic sequence
          Length = 230

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 ggcggccatccatctcctgt 336
           ||||||||||||||||||||
Sbjct: 66  ggcggccatccatctcctgt 85

>gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosome 17, complete sequence
          Length = 192971

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 128    ggatgggaggagagccagcatcag 151
              |||||||||||||||||| |||||
Sbjct: 159538 ggatgggaggagagccagaatcag 159515

>emb|BX649569.5| Human DNA sequence from clone RP11-204I2 on chromosome 9 Contains part
             of the gene for a novel protein similar to contactin
             associated protein-like 3 (CNTNAP3), complete sequence
          Length = 162657

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   tcaggaggctaatgcgggag 167
             ||||||||||||||||||||
Sbjct: 27901 tcaggaggctaatgcgggag 27882

>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   ctctccgccgctgcgccgca 269
             ||||||||||||||||||||
Sbjct: 58073 ctctccgccgctgcgccgca 58054

>emb|AL627164.8| Zebrafish DNA sequence from clone RP71-1I20 in linkage group 11,
             complete sequence
          Length = 84892

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    agcctacttgaaaagttgaa 61
             ||||||||||||||||||||
Sbjct: 58928 agcctacttgaaaagttgaa 58909

>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC
             Library) complete sequence
          Length = 183586

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   tcaggaggctaatgcgggag 167
             ||||||||||||||||||||
Sbjct: 18864 tcaggaggctaatgcgggag 18883

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 250      ctctccgccgctgcgccgca 269
                ||||||||||||||||||||
Sbjct: 27789403 ctctccgccgctgcgccgca 27789384

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 317      ggcggccatccatctcctgt 336
                ||||||||||||||||||||
Sbjct: 33700319 ggcggccatccatctcctgt 33700338

>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ggcggccatccatctcctgt 336
             ||||||||||||||||||||
Sbjct: 68726 ggcggccatccatctcctgt 68745

>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ggcggccatccatctcctgt 336
             ||||||||||||||||||||
Sbjct: 31186 ggcggccatccatctcctgt 31205

>dbj|AP002827.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2589O24, complete
             sequence
          Length = 64281

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tcttctgcagtaacatttca 210
             ||||||||||||||||||||
Sbjct: 59392 tcttctgcagtaacatttca 59373

>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence
          Length = 168481

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 128    ggatgggaggagagccagcatcag 151
              |||||||||||||||||| |||||
Sbjct: 145026 ggatgggaggagagccagaatcag 145049

>gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosome unknown, complete
             sequence
          Length = 181590

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aggagagccagcatcaggag 154
             ||||||||||||||||||||
Sbjct: 38930 aggagagccagcatcaggag 38911

>gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromosome unknown, complete
              sequence
          Length = 180657

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    aggagagccagcatcaggag 154
              ||||||||||||||||||||
Sbjct: 165604 aggagagccagcatcaggag 165585

>emb|BX005035.9| Human DNA sequence from clone RP11-133G22 on chromosome 9, complete
              sequence
          Length = 146143

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    tcaggaggctaatgcgggag 167
              ||||||||||||||||||||
Sbjct: 118302 tcaggaggctaatgcgggag 118321

>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546,
             complete sequence
          Length = 107979

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tattgacaagaaattaacat 88
             ||||||||||||||||||||
Sbjct: 79592 tattgacaagaaattaacat 79573


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,053,780
Number of Sequences: 3902068
Number of extensions: 3053780
Number of successful extensions: 57476
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57371
Number of HSP's gapped (non-prelim): 104
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)