ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet20c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 0.40
2emb|AL160273.9| Human DNA sequence from clone RP11-366I5 on chro... 42 0.40
3gb|AY573073.1| Cyrtodiopsis dalmanni 12S ribosomal RNA gene, par... 38 6.3
4gb|AY532606.1| Rock bream iridovirus strain RBIV-KOR-TY1 from So... 38 6.3
5emb|CR376860.38| Zebrafish DNA sequence from clone DKEY-111H22 i... 38 6.3
6gb|AC005084.2| Homo sapiens BAC clone CTA-298G8 from 7, complete... 38 6.3
7emb|AL121939.12|HSDJ223E3 Human DNA sequence from clone RP1-223E... 38 6.3
8emb|AL078584.17|HSJ245M18 Human DNA sequence from clone RP1-245M... 38 6.3
9gb|AY894343.1| Orange-spotted grouper iridovirus, complete genome 38 6.3
10emb|AL662792.21| Mouse DNA sequence from clone RP23-52L14 on chr... 38 6.3
11emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in... 38 6.3
12emb|BX571833.6| Zebrafish DNA sequence from clone DKEY-287J13, c... 38 6.3
13gb|AC012563.7|AC012563 Arabidopsis thaliana chromosome 1 BAC T23... 38 6.3
14emb|BX005050.6| Zebrafish DNA sequence from clone CH211-11A11, c... 38 6.3
15emb|AL837506.3| Mouse DNA sequence from clone RP23-353G2 on chro... 38 6.3

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    ccgagcacgatcgacggccgc 126
              |||||||||||||||||||||
Sbjct: 619783 ccgagcacgatcgacggccgc 619763



to top

>emb|AL160273.9| Human DNA sequence from clone RP11-366I5 on chromosome 9, complete
              sequence
          Length = 159934

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     taattaataatcacacaaaaa 38
              |||||||||||||||||||||
Sbjct: 119166 taattaataatcacacaaaaa 119146



to top

>gb|AY573073.1| Cyrtodiopsis dalmanni 12S ribosomal RNA gene, partial sequence;
          mitochondrial
          Length = 717

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 17 ttaattaataatcacacaaaaat 39
          ||||||||||| |||||||||||
Sbjct: 29 ttaattaataaccacacaaaaat 7



to top

>gb|AY532606.1| Rock bream iridovirus strain RBIV-KOR-TY1 from South Korea, complete
             genome
          Length = 112080

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    gtgcgacgttccaccgaca 85
             |||||||||||||||||||
Sbjct: 77335 gtgcgacgttccaccgaca 77353



to top

>emb|CR376860.38| Zebrafish DNA sequence from clone DKEY-111H22 in linkage group 8,
             complete sequence
          Length = 195545

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    attaataatcacacaaaaa 38
             |||||||||||||||||||
Sbjct: 55266 attaataatcacacaaaaa 55284



to top

>gb|AC005084.2| Homo sapiens BAC clone CTA-298G8 from 7, complete sequence
          Length = 177901

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 15    tcttaattaataatcacacaaaa 37
             |||||||||||||||| ||||||
Sbjct: 14043 tcttaattaataatcaaacaaaa 14065



to top

>emb|AL121939.12|HSDJ223E3 Human DNA sequence from clone RP1-223E3 on chromosome 6q13-15 Contains
             the gene for a novel protein similar to serine protease 23
             (PRSS23, ZSIG13), complete sequence
          Length = 59621

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    ttcttaattaataatcaca 32
             |||||||||||||||||||
Sbjct: 45486 ttcttaattaataatcaca 45468



to top

>emb|AL078584.17|HSJ245M18 Human DNA sequence from clone RP1-245M18 on chromosome 6p21.32-22.3
             Contains the 5' end of the gene for  chromosome 6 open
             reading frame 32 (PL48, DIFF40, DIFF48, KIAA0386), a 
             cytochrome c oxidase polypeptide II pseudogene and a CpG
             island, complete sequence
          Length = 104770

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    ataatcacacaaaaatctc 42
             |||||||||||||||||||
Sbjct: 42168 ataatcacacaaaaatctc 42150



to top

>gb|AY894343.1| Orange-spotted grouper iridovirus, complete genome
          Length = 112636

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    gtgcgacgttccaccgaca 85
             |||||||||||||||||||
Sbjct: 77710 gtgcgacgttccaccgaca 77728



to top

>emb|AL662792.21| Mouse DNA sequence from clone RP23-52L14 on chromosome 11, complete
             sequence
          Length = 164120

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 21    ttaataatcacacaaaaatctct 43
             |||||||||||| ||||||||||
Sbjct: 72175 ttaataatcacaaaaaaatctct 72153



to top

>emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in linkage group 3,
             complete sequence
          Length = 180778

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    attaataatcacacaaaaa 38
             |||||||||||||||||||
Sbjct: 98682 attaataatcacacaaaaa 98700



to top

>emb|BX571833.6| Zebrafish DNA sequence from clone DKEY-287J13, complete sequence
          Length = 198050

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     attaataatcacacaaaaa 38
              |||||||||||||||||||
Sbjct: 177479 attaataatcacacaaaaa 177497



to top

>gb|AC012563.7|AC012563 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete
             sequence
          Length = 101966

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    taattaataatcacacaaa 36
             |||||||||||||||||||
Sbjct: 39023 taattaataatcacacaaa 39041



to top

>emb|BX005050.6| Zebrafish DNA sequence from clone CH211-11A11, complete sequence
          Length = 166695

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      gaacgtttcttaattaata 26
              |||||||||||||||||||
Sbjct: 124123 gaacgtttcttaattaata 124141



to top

>emb|AL837506.3| Mouse DNA sequence from clone RP23-353G2 on chromosome 2, complete
             sequence
          Length = 112171

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    aataatcacacaaaaatct 41
             |||||||||||||||||||
Sbjct: 84792 aataatcacacaaaaatct 84810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 954,778
Number of Sequences: 3902068
Number of extensions: 954778
Number of successful extensions: 63214
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63159
Number of HSP's gapped (non-prelim): 55
length of query: 133
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 112
effective length of database: 17,151,101,840
effective search space: 1920923406080
effective search space used: 1920923406080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top