Clone Information

BLAST Search Result

Clone Name	rbaet20c03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|Y15962.1\|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1	460	e-126
2	emb\|AJ291451.1\|HVU291451 Hordeum vulgare mRNA for adenosine diph...	188	7e-45
3	emb\|AJ319659.1\|TAE319659 Triticum aestivum mRNA for adenosine di...	180	2e-42
4	ref\|XM_482788.1\| Oryza sativa (japonica cultivar-group), mRNA	141	1e-30
5	ref\|XM_507258.1\| PREDICTED Oryza sativa (japonica cultivar-group...	141	1e-30
6	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	141	1e-30
7	dbj\|AP004707.4\| Oryza sativa (japonica cultivar-group) genomic D...	141	1e-30
8	dbj\|AP004586.3\| Oryza sativa (japonica cultivar-group) genomic D...	141	1e-30
9	dbj\|AK104729.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	141	1e-30
10	dbj\|AK065284.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	141	1e-30
11	gb\|AF051156.1\|AF051156 Oryza sativa germin-like protein (GLP110)...	141	1e-30
12	gb\|AF032975.1\|AF032975 Oryza sativa germin-like protein 5 (GER5)...	141	1e-30
13	dbj\|AB015593.1\| Oryza sativa OsGLP1 gene for germin-like protein...	141	1e-30
14	dbj\|AB010876.1\| Oryza sativa OsGLP1 mRNA for germin-like protein...	141	1e-30
15	gb\|AY394010.1\| Zea mays germin-like protein (glp1) gene, promote...	127	2e-26
16	gb\|AY112552.1\| Zea mays CL11523_1 mRNA sequence	78	2e-11
17	gb\|AC018509.6\| Homo sapiens chromosome 10 clone RP11-307B23, com...	46	0.064
18	gb\|AC137000.2\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.25
19	gb\|AC148171.16\| Medicago truncatula clone mth2-30a2, complete se...	44	0.25
20	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.25
21	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	44	0.25
22	gb\|AC144455.5\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.25
23	gb\|AY146588.1\| Triticum monococcum BAC clone 453N11, complete se...	42	1.0
24	gb\|AY146587.1\| Triticum turgidum subsp. durum BAC 107G22, comple...	42	1.0
25	gb\|AY299121.1\| Xanthomonas oryzae bacteriophage Xp10 genomic DNA...	42	1.0
26	emb\|AL939114.1\|SCO939114 Streptomyces coelicolor A3(2) complete ...	42	1.0
27	gb\|AC122011.3\| Mus musculus chromosome 10 clone RP24-352E6, comp...	40	4.0
28	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	40	4.0
29	gb\|AC146316.3\| Microcebus murinus clone CH257-437M14, complete s...	40	4.0
30	gb\|AC119899.8\| Mus musculus chromosome 5, clone RP24-235E5, comp...	40	4.0
31	ref\|XM_598627.2\| PREDICTED: Bos taurus similar to CG6454-PB, iso...	40	4.0
32	gb\|AC087514.2\| Felis catus clone RP86-439N5, complete sequence	40	4.0
33	gb\|CP000353.1\| Ralstonia metallidurans CH34 megaplasmid, complet...	40	4.0
34	gb\|AC141846.3\| Homo sapiens chromosome 16 clone CTB-55P19, compl...	40	4.0
35	gb\|AC115290.5\| Mus musculus BAC clone RP23-65M10 from chromosome...	40	4.0
36	gb\|AC100120.9\| Mus musculus chromosome 10, clone RP23-40I1, comp...	40	4.0
37	gb\|AC114553.6\| Mus musculus chromosome 5, clone RP23-408M16, com...	40	4.0
38	emb\|BX322613.6\| Human DNA sequence from clone RP11-745D9 on chro...	40	4.0
39	emb\|AL590225.4\| Human DNA sequence from clone RP11-358H7 on chro...	40	4.0
40	emb\|AL161440.9\| Human DNA sequence from clone RP1-210G8 on chrom...	40	4.0
41	emb\|AL031601.4\|HSY237C10 Human DNA sequence from clone XX-Y237C1...	40	4.0
42	gb\|AC161185.5\| Mus musculus chromosome 5, clone RP23-297D16, com...	40	4.0
43	emb\|BX571857.1\| Staphylococcus aureus strain MSSA476, complete g...	40	4.0
44	gb\|AC158753.8\| Mus musculus chromosome 5, clone RP23-301E24, com...	40	4.0
45	gb\|AC068304.33\| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Can...	40	4.0
46	gb\|AC092721.2\| Homo sapiens chromosome 16 clone RP11-514P19, com...	40	4.0
47	gb\|AC140831.3\| Homo sapiens chromosome 16 clone RP11-907K12, com...	40	4.0
48	gb\|AC092374.4\| Homo sapiens chromosome 16 clone RP11-637I8, comp...	40	4.0
49	gb\|AC026131.4\| Homo sapiens chromosome 11, clone RP11-458M15, co...	40	4.0
50	dbj\|BA000033.2\| Staphylococcus aureus subsp. aureus MW2 DNA, com...	40	4.0
51	gb\|AC007446.8\|AC007446 Homo sapiens, clone hRPK.67_A_1, complete...	40	4.0
52	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	40	4.0
53	gb\|DP000022.1\| Microcebus murinus target 1 genomic scaffold	40	4.0

>emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1
          Length = 833

 Score =  460 bits (232), Expect = e-126
 Identities = 242/244 (99%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 56  ttgacaatcatcaaatgaaattgatatgaaaaattaaacacaacttgaaa-cagactcgg 114
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 814 ttgacaatcatcaaatgaaattgatatgaaaaattaaacacaacttgaaatcagactcgg 755

                                                                       
Query: 115 agttgacctcacaagcgcacgaacacatgcatcaaattaaaccgacacgctgacaccacg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 agttgacctcacaagcgcacgaacacatgcatcaaattaaaccgacacgctgacaccacg 695

                                                                       
Query: 175 acgacctttgctgagaactgcttaattagccgctgccgccgagcacggacttgagcttct 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acgacctttgctgagaactgcttaattagccgctgccgccgagcacggacttgagcttct 635

                                                                       
Query: 235 tcacctgcgcgtcgtccaagaaggtgaccttctcaaccacggcggatggcaggttgttgg 294
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 634 tcacctgcgcgtcgtccaagaaggtgaccttctcaacgacggcggatggcaggttgttgg 575

               
Query: 295 cgaa 298
           ||||
Sbjct: 574 cgaa 571

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>emb|AJ291451.1|HVU291451 Hordeum vulgare mRNA for adenosine diphosphate glucose
           pyrophosphatase (sagppase gene)
          Length = 639

 Score =  188 bits (95), Expect = 7e-45
 Identities = 98/99 (98%)
 Strand = Plus / Minus

                                                                       
Query: 200 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggt 580

                                                  
Query: 260 gaccttctcaaccacggcggatggcaggttgttggcgaa 298
           |||||||||||| ||||||||||||||||||||||||||
Sbjct: 579 gaccttctcaacgacggcggatggcaggttgttggcgaa 541

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>emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine diphosphate glucose
           pyrophosphatase
          Length = 642

 Score =  180 bits (91), Expect = 2e-42
 Identities = 97/99 (97%)
 Strand = Plus / Minus

                                                                       
Query: 200 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggt 583

                                                  
Query: 260 gaccttctcaaccacggcggatggcaggttgttggcgaa 298
           |||||||||||| |||||||| |||||||||||||||||
Sbjct: 582 gaccttctcaacgacggcggacggcaggttgttggcgaa 544

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>ref|XM_482788.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 938

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 204 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 680

                                              
Query: 264 ttctcaaccacggcggatggcaggttgttggcgaa 298
           ||||| || | |||||| |||||||||||||||||
Sbjct: 679 ttctcgacgatggcggacggcaggttgttggcgaa 645

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>ref|XM_507258.1| PREDICTED Oryza sativa (japonica cultivar-group), P0493A04.40 mRNA
          Length = 994

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 204 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 669

                                              
Query: 264 ttctcaaccacggcggatggcaggttgttggcgaa 298
           ||||| || | |||||| |||||||||||||||||
Sbjct: 668 ttctcgacgatggcggacggcaggttgttggcgaa 634

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                            
Query: 204      ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
                ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22551065 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 22551124

                                                   
Query: 264      ttctcaaccacggcggatggcaggttgttggcgaa 298
                ||||| || | |||||| |||||||||||||||||
Sbjct: 22551125 ttctcgacgatggcggacggcaggttgttggcgaa 22551159

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>dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0690E03
          Length = 139924

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                         
Query: 204   ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
             ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24566 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 24625

                                                
Query: 264   ttctcaaccacggcggatggcaggttgttggcgaa 298
             ||||| || | |||||| |||||||||||||||||
Sbjct: 24626 ttctcgacgatggcggacggcaggttgttggcgaa 24660

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>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0493A04
          Length = 149367

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                          
Query: 204    ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
              ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145993 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 146052

                                                 
Query: 264    ttctcaaccacggcggatggcaggttgttggcgaa 298
              ||||| || | |||||| |||||||||||||||||
Sbjct: 146053 ttctcgacgatggcggacggcaggttgttggcgaa 146087

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>dbj|AK104729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C02, full
           insert sequence
          Length = 938

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 204 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 680

                                              
Query: 264 ttctcaaccacggcggatggcaggttgttggcgaa 298
           ||||| || | |||||| |||||||||||||||||
Sbjct: 679 ttctcgacgatggcggacggcaggttgttggcgaa 645

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>dbj|AK065284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M08, full
           insert sequence
          Length = 994

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 204 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 669

                                              
Query: 264 ttctcaaccacggcggatggcaggttgttggcgaa 298
           ||||| || | |||||| |||||||||||||||||
Sbjct: 668 ttctcgacgatggcggacggcaggttgttggcgaa 634

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>gb|AF051156.1|AF051156 Oryza sativa germin-like protein (GLP110) mRNA, complete cds
          Length = 1004

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 204 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 661

                                              
Query: 264 ttctcaaccacggcggatggcaggttgttggcgaa 298
           ||||| || | |||||| |||||||||||||||||
Sbjct: 660 ttctcgacgatggcggacggcaggttgttggcgaa 626

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>gb|AF032975.1|AF032975 Oryza sativa germin-like protein 5 (GER5) mRNA, complete cds
          Length = 1030

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 204 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 682

                                              
Query: 264 ttctcaaccacggcggatggcaggttgttggcgaa 298
           ||||| || | |||||| |||||||||||||||||
Sbjct: 681 ttctcgacgatggcggacggcaggttgttggcgaa 647

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>dbj|AB015593.1| Oryza sativa OsGLP1 gene for germin-like protein 1, complete cds
          Length = 642

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 204 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 579

                                              
Query: 264 ttctcaaccacggcggatggcaggttgttggcgaa 298
           ||||| || | |||||| |||||||||||||||||
Sbjct: 578 ttctcgacgatggcggacggcaggttgttggcgaa 544

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>dbj|AB010876.1| Oryza sativa OsGLP1 mRNA for germin-like protein 1, complete cds
          Length = 994

 Score =  141 bits (71), Expect = 1e-30
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                       
Query: 204 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 681

                                              
Query: 264 ttctcaaccacggcggatggcaggttgttggcgaa 298
           ||||| || | |||||| |||||||||||||||||
Sbjct: 680 ttctcgacgatggcggacggcaggttgttggcgaa 646

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>gb|AY394010.1| Zea mays germin-like protein (glp1) gene, promoter region and
            complete cds
          Length = 2490

 Score =  127 bits (64), Expect = 2e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 204  ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 263
            |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ccgctgccgccgagcacactcttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 2030

                                            
Query: 264  ttctcaaccacggcggatggcaggttgttggc 295
            ||||| || |||||||| || |||||||||||
Sbjct: 2029 ttctccacgacggcggacgggaggttgttggc 1998

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>gb|AY112552.1| Zea mays CL11523_1 mRNA sequence
          Length = 544

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                  
Query: 241 gcgcgtcgtccaagaaggtgaccttctcaaccacggcggatggcaggttgttggc 295
           |||||||||||||||||||||||||||| || |||||||| || |||||||||||
Sbjct: 366 gcgcgtcgtccaagaaggtgaccttctccacgacggcggacgggaggttgttggc 420

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>gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, complete sequence
          Length = 162877

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 67     caaatgaaattgatatgaaaaat 89
              |||||||||||||||||||||||
Sbjct: 144794 caaatgaaattgatatgaaaaat 144816

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>gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0035I01, complete sequence
          Length = 147813

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 72   gaaattgatatgaaaaattaaa 93
            ||||||||||||||||||||||
Sbjct: 3137 gaaattgatatgaaaaattaaa 3158

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>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence
          Length = 158384

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 72    gaaattgatatgaaaaattaaa 93
             ||||||||||||||||||||||
Sbjct: 58531 gaaattgatatgaaaaattaaa 58552

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 72       gaaattgatatgaaaaattaaa 93
                ||||||||||||||||||||||
Sbjct: 29518635 gaaattgatatgaaaaattaaa 29518656

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 205     cgctgccgccgagcacggacttgagc 230
               |||||||||||||||||| |||||||
Sbjct: 7136995 cgctgccgccgagcacggccttgagc 7137020

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>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0086G17,
              complete sequence
          Length = 134631

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 72     gaaattgatatgaaaaattaaa 93
              ||||||||||||||||||||||
Sbjct: 102905 gaaattgatatgaaaaattaaa 102926

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>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     cacgtgtgggcgttatcattt 39
              |||||||||||||||||||||
Sbjct: 104360 cacgtgtgggcgttatcattt 104380

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>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence
          Length = 142018

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    cacgtgtgggcgttatcattt 39
             |||||||||||||||||||||
Sbjct: 73257 cacgtgtgggcgttatcattt 73277

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>gb|AY299121.1| Xanthomonas oryzae bacteriophage Xp10 genomic DNA, complete genome
          Length = 44373

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 228   agcttcttcacctgcgcgtcg 248
             |||||||||||||||||||||
Sbjct: 10658 agcttcttcacctgcgcgtcg 10638

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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 227    gagcttcttcacctgcgcgtcgtcc 251
              |||||||||||||| ||||||||||
Sbjct: 305483 gagcttcttcaccttcgcgtcgtcc 305507

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>gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, complete sequence
          Length = 181468

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    gaaattgatatgaaaaatta 91
             ||||||||||||||||||||
Sbjct: 13285 gaaattgatatgaaaaatta 13266

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     cttcttcacctgcgcgtcgt 249
               ||||||||||||||||||||
Sbjct: 2254715 cttcttcacctgcgcgtcgt 2254734

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>gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete sequence
          Length = 274705

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    ttgatatgaaaaattaaaca 95
             ||||||||||||||||||||
Sbjct: 59774 ttgatatgaaaaattaaaca 59793

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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    catcaaatgaaattgatatgaaaa 87
             |||||| |||||||||||||||||
Sbjct: 57747 catcaattgaaattgatatgaaaa 57770

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>ref|XM_598627.2| PREDICTED: Bos taurus similar to CG6454-PB, isoform B (LOC520387),
            mRNA
          Length = 3625

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 83   gaaaaattaaacacaacttgaaac 106
            |||||||||||||||| |||||||
Sbjct: 3157 gaaaaattaaacacaaattgaaac 3134

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>gb|AC087514.2| Felis catus clone RP86-439N5, complete sequence
          Length = 151974

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    aatcatcaaatgaaattgat 80
             ||||||||||||||||||||
Sbjct: 60358 aatcatcaaatgaaattgat 60377

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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     gccgctgccgccgagcacgg 222
               ||||||||||||||||||||
Sbjct: 2457731 gccgctgccgccgagcacgg 2457712

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>gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, complete sequence
          Length = 261450

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 71     tgaaattgatatgaaaaattaaacacaa 98
              ||||| |||| |||||||||||||||||
Sbjct: 232770 tgaaagtgatctgaaaaattaaacacaa 232743

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>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence
          Length = 245623

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 82     tgaaaaattaaacacaacttgaaa 105
              ||||||||||||||||| ||||||
Sbjct: 225998 tgaaaaattaaacacaaattgaaa 226021

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>gb|AC100120.9| Mus musculus chromosome 10, clone RP23-40I1, complete sequence
          Length = 236895

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    gaaattgatatgaaaaatta 91
             ||||||||||||||||||||
Sbjct: 38058 gaaattgatatgaaaaatta 38077

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>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence
          Length = 198281

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     aatgaaattgatatgaaaaa 88
              ||||||||||||||||||||
Sbjct: 195204 aatgaaattgatatgaaaaa 195185

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>emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 191752

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    aatcatcaaatgaaattgat 80
             ||||||||||||||||||||
Sbjct: 40708 aatcatcaaatgaaattgat 40727

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>emb|AL590225.4| Human DNA sequence from clone RP11-358H7 on chromosome 6 Contains
            part of the gene for a novel protein highly similar to
            FLJ30899, complete sequence
          Length = 65114

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   aattgatatgaaaaattaaa 93
            ||||||||||||||||||||
Sbjct: 1289 aattgatatgaaaaattaaa 1270

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>emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chromosome 6, complete
             sequence
          Length = 81780

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tgaaaaattaaacacaactt 101
             ||||||||||||||||||||
Sbjct: 54905 tgaaaaattaaacacaactt 54886

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>emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C10 on chromosome 10 Contains
           a poly(A) binding protein, cytoplasmic 1 (PABPC1)
           pseudogene, an Ig kappa chain precursor V region
           pseudogene, a pseudogene similar to part of kinase
           suppressor of ras (KSR) and four CpG islands, complete
           sequence
          Length = 197700

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  aatcatcaaatgaaattgat 80
           ||||||||||||||||||||
Sbjct: 760 aatcatcaaatgaaattgat 779

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>gb|AC161185.5| Mus musculus chromosome 5, clone RP23-297D16, complete sequence
          Length = 206099

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 64   catcaaatgaaattgatatgaaaa 87
            |||||| |||||||||||||||||
Sbjct: 2381 catcaattgaaattgatatgaaaa 2358

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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     aaattgatatgaaaaattaa 92
              ||||||||||||||||||||
Sbjct: 281659 aaattgatatgaaaaattaa 281678

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>gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, complete sequence
          Length = 190368

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aatgaaattgatatgaaaaa 88
             ||||||||||||||||||||
Sbjct: 32566 aatgaaattgatatgaaaaa 32547

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>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155413

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tgaaaaattaaacacaactt 101
             ||||||||||||||||||||
Sbjct: 18496 tgaaaaattaaacacaactt 18477

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>gb|AC092721.2| Homo sapiens chromosome 16 clone RP11-514P19, complete sequence
          Length = 201382

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 71     tgaaattgatatgaaaaattaaacacaa 98
              ||||| |||| |||||||||||||||||
Sbjct: 194536 tgaaagtgatctgaaaaattaaacacaa 194509

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>gb|AC140831.3| Homo sapiens chromosome 16 clone RP11-907K12, complete sequence
          Length = 96984

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 71    tgaaattgatatgaaaaattaaacacaa 98
             ||||| |||| |||||||||||||||||
Sbjct: 28681 tgaaagtgatctgaaaaattaaacacaa 28708

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>gb|AC092374.4| Homo sapiens chromosome 16 clone RP11-637I8, complete sequence
          Length = 150962

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 71    tgaaattgatatgaaaaattaaacacaa 98
             ||||| |||| |||||||||||||||||
Sbjct: 92388 tgaaagtgatctgaaaaattaaacacaa 92361

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>gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, complete sequence
          Length = 174688

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     aatcatcaaatgaaattgat 80
              ||||||||||||||||||||
Sbjct: 102969 aatcatcaaatgaaattgat 102950

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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     aaattgatatgaaaaattaa 92
              ||||||||||||||||||||
Sbjct: 282959 aaattgatatgaaaaattaa 282978

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>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence
          Length = 177471

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tgaaaaattaaacacaactt 101
              ||||||||||||||||||||
Sbjct: 126735 tgaaaaattaaacacaactt 126754

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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     cttcttcacctgcgcgtcgt 249
               ||||||||||||||||||||
Sbjct: 2421518 cttcttcacctgcgcgtcgt 2421499

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>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     ttgatatgaaaaattaaaca 95
              ||||||||||||||||||||
Sbjct: 631265 ttgatatgaaaaattaaaca 631284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,723,653
Number of Sequences: 3902068
Number of extensions: 2723653
Number of successful extensions: 56513
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56205
Number of HSP's gapped (non-prelim): 307
length of query: 302
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 280
effective length of database: 17,147,199,772
effective search space: 4801215936160
effective search space used: 4801215936160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result