ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet20b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/my... 32 0.33
2SC5A3_CANFA (P31637) Sodium/myo-inositol cotransporter (Na(+)/my... 31 0.97
3SC5A3_BOVIN (P53793) Sodium/myo-inositol cotransporter (Na(+)/my... 31 0.97
4SET4_YEAST (P42948) SET domain protein 4 31 0.97
5PHF8_HUMAN (Q9UPP1) PHD finger protein 8 28 6.3
6FAS_YEAST (P53848) Folic acid synthesis protein FOL1 [Includes: ... 28 8.2

>SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol|
           cotransporter)
          Length = 718

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +2

Query: 5   IIGTPDASNVIQMHKM--TSNLNESPKHRQQIMSSLTGDRTTMLRNSIQEDRPW--MSRG 172
           ++ +PD ++++  + +  T++ N SPK           +   MLRN   ED PW     G
Sbjct: 218 MLASPDVTSILLTYNLSNTNSCNVSPKK----------EALKMLRNPTDEDVPWPGFILG 267

Query: 173 RNPMLCWSW 199
           + P   W W
Sbjct: 268 QTPASVWYW 276



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>SC5A3_CANFA (P31637) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol|
           cotransporter)
          Length = 718

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 5   IIGTPDASNVIQMHKMTSNLNESPKHRQQIMSSLTGDRTTMLRNSIQEDRPW--MSRGRN 178
           ++ +P+ ++++  + + SN N    H ++       D   MLRN   ED PW     G+ 
Sbjct: 218 MLASPNVTSILLTYNL-SNTNSCNVHPKK-------DALKMLRNPTDEDVPWPGFVLGQT 269

Query: 179 PMLCWSW 199
           P   W W
Sbjct: 270 PASVWYW 276



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>SC5A3_BOVIN (P53793) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol|
           cotransporter)
          Length = 718

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 5   IIGTPDASNVIQMHKMTSNLNESPKHRQQIMSSLTGDRTTMLRNSIQEDRPW--MSRGRN 178
           ++ +P+ ++++  + + SN N    H ++       D   MLRN   ED PW     G+ 
Sbjct: 218 MLASPNVTSILLTYNL-SNTNSCNVHPKK-------DALKMLRNPTDEDVPWPGFILGQT 269

Query: 179 PMLCWSW 199
           P   W W
Sbjct: 270 PASVWYW 276



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>SET4_YEAST (P42948) SET domain protein 4|
          Length = 560

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 8   IGTPDASNVIQMHKMTSNLNESPKHRQQIMSSLTGDRTTMLRNSIQEDR 154
           I T  ASN  Q  +  +N+ E PK RQ   ++ T + +  +R  +++++
Sbjct: 238 IVTTSASNTNQHQQSVNNIEEQPKKRQLHYTAPTTENSNSIRKKLRQEK 286



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>PHF8_HUMAN (Q9UPP1) PHD finger protein 8|
          Length = 1060

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 170 LGTSMAGPPV*SSEAWWSGRRSVSS*FADDVLGFHSNS 57
           L +S + P   S +AWW+G +  SS  +   LG  SNS
Sbjct: 767 LQSSSSSPATSSLQAWWTGGQDRSSGSSSSGLGTVSNS 804



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>FAS_YEAST (P53848) Folic acid synthesis protein FOL1 [Includes:|
           Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA) (FASA)
           (FASB);
           2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
           pyrophosphokinase (EC 2.7.6.3)
           (7,8-dihydro-6-hydroxymethylpterin-pyrophosphok
          Length = 824

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 56  SNLNESPKHRQQIMSSLTGDRTTMLRN--SIQEDRPWMSRGRNPML 187
           SN+ +  KH Q  +  L+ ++T  LRN  SI E  P   + + P +
Sbjct: 306 SNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYFKDQTPFM 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,723,508
Number of Sequences: 219361
Number of extensions: 699932
Number of successful extensions: 1967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1967
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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