>RHG06_HUMAN (O43182) Rho-GTPase-activating protein 6 (Rho-type|
           GTPase-activating protein RhoGAPX-1)
          Length = 974

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 357 PGTPASC--WWTGPPERVTTPTARTG 286
           PG PA+   W  GPPE V TPT + G
Sbjct: 887 PGKPAAAAAWIQGPPEGVETPTDQGG 912

>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 296 AVGVVTRSGGPVHQQLAGVPG 358
           + G V R G P HQ LAGVPG
Sbjct: 319 SAGQVGRPGSPGHQGLAGVPG 339

>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1)
          Length = 856

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 373 GKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 269
           G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 417 GLGSYPGYAPAPHLPPAFIPSYNAHYP---KFLLP 448

>BETT_ECOLI (P0ABC9) High-affinity choline transport protein|
          Length = 677

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 106 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 246
           ++T  HY  T  + Y+L   A  G+ S   +LPL  R++  P + +R
Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185

>BETT_ECO57 (P0ABD0) High-affinity choline transport protein|
          Length = 677

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 106 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 246
           ++T  HY  T  + Y+L   A  G+ S   +LPL  R++  P + +R
Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185

>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1) (Positive regulatory
           domain I-binding factor 1) (PRDI-binding factor 1)
           (PRDI-BF1)
          Length = 789

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 373 GKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 269
           G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 349 GLGSYPGYAPLPHLPPAFIPSYNAHYP---KFLLP 380

>SYK_RICPR (Q9ZDF8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 528

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 63  YLAREDPNTSSYTNYLHVYALQYY 134
           Y  +  PNTS+Y ++L  +A++YY
Sbjct: 403 YEPKATPNTSTYLDHLTEFAIRYY 426


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,032,107
Number of Sequences: 219361
Number of extensions: 839431
Number of successful extensions: 2259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)