ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet19d07 |
|---|---|
| Clone Library Name | barley_pub |
>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)| Length = 634 Score = 31.6 bits (70), Expect = 0.50 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +3 Query: 273 DVPPQPNSPPDNVFRPDRPDKTGP 344 D PPQP+ P DN +PD+PD P Sbjct: 145 DNPPQPDIPCDNPPQPDQPDDNPP 168
>MMP15_MOUSE (O54732) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) Length = 657 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 279 PPQPNSPPDNVFRPDRPDKTGPWSQRR 359 PP+P PP +P+RP K GP Q R Sbjct: 327 PPRPPQPPHPGGKPERPPKPGPPPQPR 353
>MMP15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) (SMCP-2) Length = 669 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 279 PPQPNSPPDNVFRPDRPDKTGPWSQRR 359 PP+P PP +P+RP K GP Q R Sbjct: 331 PPRPPQPPPPGGKPERPPKPGPPVQPR 357
>PHD1_SCHPO (O13298) Histone deacetylase phd1| Length = 434 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/61 (24%), Positives = 28/61 (45%) Frame = +3 Query: 72 PQASYPWGNFSDTSSFKLRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILG 251 P+ S P+ S F R K + + ++ GN + +P PH I++ L++G Sbjct: 4 PETSTPYEQVEKGSFFSFRPQKKRVTYHLDEQV--GNYHYGDKHPMKPHRITITNHLVMG 61 Query: 252 H 254 + Sbjct: 62 Y 62
>GBRAL_DROME (Q24352) Gamma-aminobutyric-acid receptor alpha-like precursor| (GABA(A) receptor alpha-like and glycine receptor-like subunit of Drosophila) (GRD) Length = 686 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -1 Query: 197 ARLILISSTNTNRESVAYRSFRSSEFEARGVRKVTPGITGLWQPSVHSDVAF*LIISCVN 18 A+ IS R ++Y +R E EAR K TP + + S + F L+ +N Sbjct: 606 AQAARISPPTGGRRRMSY--YRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILIN 663 Query: 17 IFVW 6 +F W Sbjct: 664 VFYW 667
>HXC11_HUMAN (O43248) Homeobox protein Hox-C11| Length = 304 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = +3 Query: 6 PNKYIYTADY*SKSNVAMNAWLPQASYPWGNFSDTSSFKLRRSKGSIGHAFTVRI 170 P++ AD+ + + A N +LP +Y FS SSF + I + ++ ++ Sbjct: 13 PSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQISYPYSAQV 67
>FL3H_VITVI (P41090) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9)| (Flavonone-3-hydroxylase) (F3H) (FHT) Length = 364 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 187 F*FPVRIRTVKAWPIDPLDLRSLKLEVSEKL 95 F +P+R R WP P RS+ E SEKL Sbjct: 135 FSYPLRTRDYSRWPDKPEGWRSVTQEYSEKL 165
>NCF4_HUMAN (Q15080) Neutrophil cytosol factor 4 (NCF-4) (Neutrophil NADPH| oxidase factor 4) (p40-phox) (p40phox) Length = 339 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +1 Query: 112 LASNSEDLKDR*ATLSRFVFVLEIKIKRAFTLLFHTRF 225 +++N D++++ S FVFV+E+K K L + R+ Sbjct: 22 ISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRY 59
>ATS9_HUMAN (Q9P2N4) ADAMTS-9 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 9) (ADAM-TS 9) (ADAM-TS9) Length = 1935 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Frame = +3 Query: 72 PQASYPWGNFSDTSSFKLRRSKGSIGHAFTVR-IRTGNQNQTSFY 203 PQA Y F F L + G I FTV + T NQT FY Sbjct: 96 PQAHYRLSAFGQQFLFNLTANAGFIAPLFTVTLLGTPGVNQTKFY 140
>YPQR_ACICA (P07783) Hypothetical protein in PQQ-III 3'region (ORF R)| (Fragment) Length = 315 Score = 28.5 bits (62), Expect = 4.2 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = +3 Query: 60 NAWLPQASYPWGNFSDTSSFKLRRSKGSIGHAFTVR-IRTGNQNQTSFYPFVPHEISVLV 236 +A PQA N +D +R SKG +G F V +R+ Q + Sbjct: 230 HALCPQAR----NLTDPQLKAIRESKGMVGVNFDVAFLRSDGQRNAD----------TSI 275 Query: 237 ELILGHLRYLLTDVPP 284 ++IL HL YL+ V P Sbjct: 276 DVILEHLEYLMDRVAP 291
>LRP8_MOUSE (Q924X6) Low-density lipoprotein receptor-related protein 8| precursor (Apolipoprotein E receptor 2) Length = 996 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -2 Query: 355 LWLQGPVLSGRSGRKTLSGGEFGWGGTSVKR*RRCPKMSSTRTEISCGTK 206 L L P +S S + T + + W G +KR R P+ +ST T S T+ Sbjct: 736 LCLPAPQISSHSPKYTCACPDTMWLGPDMKRCYRAPQSTSTTTLASAMTR 785
>NCF4_MOUSE (P97369) Neutrophil cytosol factor 4 (NCF-4) (Neutrophil NADPH| oxidase factor 4) (p40-phox) (p40phox) Length = 339 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +1 Query: 112 LASNSEDLKDR*ATLSRFVFVLEIKIKRAFTLLFHTRF 225 +++N D++++ S FVFV+E+K K L + R+ Sbjct: 22 VSANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRY 59
>LRP8_HUMAN (Q14114) Low-density lipoprotein receptor-related protein 8| precursor (Apolipoprotein E receptor 2) Length = 963 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -2 Query: 355 LWLQGPVLSGRSGRKTLSGGEFGWGGTSVKR*RRCPKMSSTRTEISCGTK 206 L L P +S S + T + + W G +KR R P+ +ST T S T+ Sbjct: 703 LCLPAPQISSHSPKYTCACPDTMWLGPDMKRCYRAPQSTSTTTLASTMTR 752
>HSN2_RAT (Q6IFS7) Protein HSN2 precursor| Length = 434 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +3 Query: 243 ILGHLRYLLTDVPPQPNSPPDNVFRPDRPDKT 338 ++GHL+ L D P P SP ++ P+ D T Sbjct: 206 LVGHLQNLRLDSGPSPASPLSSISAPNSTDAT 237
>RL15_BURPS (Q63Q30) 50S ribosomal protein L15| Length = 144 Score = 27.7 bits (60), Expect = 7.2 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Frame = -2 Query: 328 GRSGRKTLSGG--EFGWGGTSVKR*RRCPKMSSTRTEISCGTKG*KLV*F*FPVRIRTVK 155 G G+K+ SGG + G+ G + RR PK T TK F VR+ ++ Sbjct: 34 GHKGQKSRSGGFHKVGFEGGQMPLQRRLPKRGFTSL-----TKE-----FVGEVRLGDLE 83 Query: 154 AWPIDPLDLRSLK 116 P+D +DL +LK Sbjct: 84 KLPVDEIDLLALK 96
>RL15_BURMA (Q62GM4) 50S ribosomal protein L15| Length = 144 Score = 27.7 bits (60), Expect = 7.2 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Frame = -2 Query: 328 GRSGRKTLSGG--EFGWGGTSVKR*RRCPKMSSTRTEISCGTKG*KLV*F*FPVRIRTVK 155 G G+K+ SGG + G+ G + RR PK T TK F VR+ ++ Sbjct: 34 GHKGQKSRSGGFHKVGFEGGQMPLQRRLPKRGFTSL-----TKE-----FVGEVRLGDLE 83 Query: 154 AWPIDPLDLRSLK 116 P+D +DL +LK Sbjct: 84 KLPVDEIDLLALK 96
>HSN2_MOUSE (Q6IFS6) Protein HSN2 precursor| Length = 433 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +3 Query: 243 ILGHLRYLLTDVPPQPNSPPDNVFRPDRPDKT 338 ++GHL+ L D P P SP ++ P+ D T Sbjct: 206 LVGHLQNLRLDSGPSPASPLSSISAPNSTDAT 237
>AMPE_MOUSE (P16406) Glutamyl aminopeptidase (EC 3.4.11.7) (EAP)| (Aminopeptidase A) (APA) (BP-1/6C3 antigen) Length = 945 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Frame = +3 Query: 222 ISVLVELILGHLRYLLTDVPPQPNSPP----------DNVFRPDRPDKTGPWSQRR 359 + ++V L +G R D P P+ PP D PD D++G W R Sbjct: 29 VGLIVGLSVGLTRSCEQDTTPAPSQPPPEASTALPPQDQNVCPDSEDESGEWKNFR 84
>EXOY_RHISN (P14186) Exopolysaccharide production protein exoY| Length = 226 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 92 PGITGLWQPSVHSDVAF 42 PG+TGLWQ S +DV++ Sbjct: 173 PGLTGLWQISGRNDVSY 189
>EXOY_RHIME (Q02731) Exopolysaccharide production protein exoY| Length = 226 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 92 PGITGLWQPSVHSDVAF 42 PG+TGLWQ S +DV++ Sbjct: 173 PGLTGLWQISGRNDVSY 189
>AMSG_ERWAM (Q46628) UDP-galactose-lipid carrier transferase (EC 2.-.-.-)| Length = 477 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 92 PGITGLWQPSVHSDVAF 42 PG+TGLWQ S +DV++ Sbjct: 424 PGMTGLWQVSGRNDVSY 440
>SYG_LEIXX (Q6AHF7) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 463 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 8/51 (15%) Frame = +3 Query: 231 LVELILGHLRY----LLTDVPPQPNSPP----DNVFRPDRPDKTGPWSQRR 359 L E ++ H RY L + PP D++ PD P+K G W+ R Sbjct: 90 LTESLITHKRYRADHLFEAYEAEHGHPPANGLDDIADPDHPEKVGQWTPIR 140
>NIR_ARATH (Q39161) Ferredoxin--nitrite reductase, chloroplast precursor (EC| 1.7.7.1) (NiR) Length = 586 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 172 RIRTVKAWPIDPLDLRSLKLEVSEKLPQG*LACGS 68 R +T W ID L + + EV +++P G L GS Sbjct: 328 RQKTRMMWLIDELGVEGFRTEVEKRMPNGKLERGS 362
>IL6RA_PIG (O18796) Interleukin-6 receptor alpha chain precursor (IL-6R-alpha)| (IL-6R 1) (CD126 antigen) Length = 467 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/49 (38%), Positives = 20/49 (40%) Frame = +3 Query: 204 PFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPDKTGPWS 350 P P VLV LI P PNS DN R RP+ GP S Sbjct: 415 PERPKSTPVLVPLI---------SPPVSPNSLGDNTSRNSRPEARGPQS 454 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,251,107 Number of Sequences: 219361 Number of extensions: 1042178 Number of successful extensions: 3177 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3047 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3174 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
