ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet19c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock ... 64 2e-07
2gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Ca... 44 0.22
3gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Can... 44 0.22
4gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequ... 42 0.88
5ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase... 40 3.5
6ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative... 40 3.5
7gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
8emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in... 40 3.5
9emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 ... 40 3.5
10gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, c... 40 3.5
11emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in... 40 3.5
12gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Can... 40 3.5
13gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Can... 40 3.5
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
16emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 i... 40 3.5
17emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone... 40 3.5
18dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
19dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
20emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, ... 40 3.5
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5

>gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock protein 16.9
           (hsp16.9-17LC3) mRNA, partial cds
          Length = 440

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 55/63 (87%), Gaps = 6/63 (9%)
 Strand = Plus / Plus

                                                                       
Query: 106 actaaatgaacaaaccggaagcgagtggcttcatcgac------acaaccttgatttcaa 159
           ||||||||||||||| |||||||| |||||||||||||      ||||||||||||||||
Sbjct: 299 actaaatgaacaaacaggaagcgactggcttcatcgaccgaacaacaaccttgatttcaa 358

              
Query: 160 act 162
           |||
Sbjct: 359 act 361



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>gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210923

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 214    acggacggacggacggatcagg 235
              ||||||||||||||||||||||
Sbjct: 171016 acggacggacggacggatcagg 170995



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>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 229681

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   acggacggacggacggatcagg 235
             ||||||||||||||||||||||
Sbjct: 70676 acggacggacggacggatcagg 70655



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>gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequence
          Length = 422

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 214 acggacggacggacggatcag 234
           |||||||||||||||||||||
Sbjct: 113 acggacggacggacggatcag 93



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>ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase (DDB0231482),
           partial mRNA
          Length = 1770

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  acaaatcttacaagatttca 56
           ||||||||||||||||||||
Sbjct: 339 acaaatcttacaagatttca 358



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>ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative G-protein
           (OSJNBa0023I19.15), mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 ccggcggcacggcgcagccg 267
           ||||||||||||||||||||
Sbjct: 256 ccggcggcacggcgcagccg 237



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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     ccggcggcacggcgcagccg 267
               ||||||||||||||||||||
Sbjct: 1104096 ccggcggcacggcgcagccg 1104077



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>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2,
              complete sequence
          Length = 175342

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    ggaacggacggacggacgga 230
              ||||||||||||||||||||
Sbjct: 123816 ggaacggacggacggacgga 123797



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>emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 in linkage group 8,
             complete sequence
          Length = 137166

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   gaacggacggacggacggat 231
             ||||||||||||||||||||
Sbjct: 63584 gaacggacggacggacggat 63603



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>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence
          Length = 157450

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    ccggcggcacggcgcagccg 267
              ||||||||||||||||||||
Sbjct: 101549 ccggcggcacggcgcagccg 101530



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>emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in linkage group 21,
             complete sequence
          Length = 153142

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ggaacggacggacggacgga 230
             ||||||||||||||||||||
Sbjct: 66734 ggaacggacggacggacgga 66715



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>gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 206191

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 14    caccttccatagccactggatatacaaa 41
             ||||||||||||||||||  ||||||||
Sbjct: 41677 caccttccatagccactgtgtatacaaa 41650



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>gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162273

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 14     caccttccatagccactggatatacaaa 41
              ||||||||||||||||||  ||||||||
Sbjct: 153678 caccttccatagccactgtgtatacaaa 153651



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     ccggcggcacggcgcagccg 267
               ||||||||||||||||||||
Sbjct: 1104096 ccggcggcacggcgcagccg 1104077



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 213      aacggacggacggacggatc 232
                ||||||||||||||||||||
Sbjct: 33695616 aacggacggacggacggatc 33695597



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>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20,
              complete sequence
          Length = 174999

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    ggaacggacggacggacgga 230
              ||||||||||||||||||||
Sbjct: 123472 ggaacggacggacggacgga 123453



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>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20
          Length = 74452

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   gaacggacggacggacggat 231
             ||||||||||||||||||||
Sbjct: 73734 gaacggacggacggacggat 73753



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>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   aacggacggacggacggatc 232
             ||||||||||||||||||||
Sbjct: 64023 aacggacggacggacggatc 64004



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>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   aacggacggacggacggatc 232
             ||||||||||||||||||||
Sbjct: 26483 aacggacggacggacggatc 26464



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>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence
          Length = 148678

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    ggaacggacggacggacgga 230
              ||||||||||||||||||||
Sbjct: 124799 ggaacggacggacggacgga 124818



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     ccggcggcacggcgcagccg 267
               ||||||||||||||||||||
Sbjct: 1104093 ccggcggcacggcgcagccg 1104074


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,819,461
Number of Sequences: 3902068
Number of extensions: 1819461
Number of successful extensions: 47888
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47753
Number of HSP's gapped (non-prelim): 135
length of query: 269
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 247
effective length of database: 17,147,199,772
effective search space: 4235358343684
effective search space used: 4235358343684
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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