ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet19b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATM_CANGA (Q6FRZ9) Serine/threonine-protein kinase TEL1 (EC 2.7.... 28 8.3
2LEPA_ANASP (Q8YU48) GTP-binding protein lepA 28 8.3

>ATM_CANGA (Q6FRZ9) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase TEL1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2763

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -2

Query: 216 HTHTYI*INALIYYLHVGEKERERSTYVEPAMHGR--HTVVSML*LIFTSFERNREFV-V 46
           H+  Y    +LIY+++  EK  +  TY+   ++ R    ++ +  L F  +E  ++F+ +
Sbjct: 679 HSLKYTFAISLIYFINFIEKSGKVYTYLNQELNQRLNSILIELDFLSFDKWEEGKQFIEI 738

Query: 45  LCSMCTF 25
           +C+  TF
Sbjct: 739 ICNQETF 745



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>LEPA_ANASP (Q8YU48) GTP-binding protein lepA|
          Length = 603

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 232 EVIYTTHTHIYMNKCSHILSPCGRERKREKYVR 134
           +VI T    +Y++  SH+ +P  RER  E YV+
Sbjct: 378 KVITTKGEELYIDNPSHLPAPNDRERIEEPYVK 410


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,199,727
Number of Sequences: 219361
Number of extensions: 575153
Number of successful extensions: 1232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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