ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet19b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC118255.32| Mus musculus chromosome 8, clone RP24-89A4, comp... 42 1.1
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.1
3ref|XM_724829.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 1.1
4gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 42 1.1
5gb|AC137157.3| Mus musculus BAC clone RP23-377M11 from chromosom... 42 1.1
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
7gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 geno... 42 1.1
8gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.1
9emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 42 1.1
10gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9... 40 4.4
11gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 40 4.4
12gb|AC091655.15| Trypanosoma brucei chromosome 5 clone RPCI93-3C6... 40 4.4
13gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genom... 40 4.4
14gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 4.4
15gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic seque... 40 4.4
16gb|AY533707.1| Fundulus heteroclitus Na-K-Cl cotransporter isofo... 40 4.4
17emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 4.4
18emb|AL672152.8| Mouse DNA sequence from clone RP23-426A16 on chr... 40 4.4
19ref|XM_721630.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
20ref|XM_721118.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
21ref|XM_721628.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
22ref|XM_721764.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
23ref|XM_723051.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
24ref|XM_723311.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
25ref|XM_723342.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
26ref|XM_723351.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
27ref|XM_724523.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
28ref|XM_724827.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
29ref|XM_722259.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
30ref|XM_722260.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
31ref|XM_722275.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
32ref|XM_722586.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
33ref|XM_722798.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.4
34gb|AC006204.1| Homo sapiens PAC clone RP5-1102B4 from 7, complet... 40 4.4
35emb|AL138714.9| Human DNA sequence from clone RP11-121J7 on chro... 40 4.4
36emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.4
37gb|AC083804.13| Homo sapiens 3 BAC RP11-269P9 (Roswell Park Canc... 40 4.4
38emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0... 40 4.4
39gb|AC103362.7| Mus musculus chromosome 18, clone RP24-87N19, com... 40 4.4
40dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
41gb|AC022345.2|AC022345 Drosophila melanogaster, chromosome X, re... 40 4.4
42dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.4
43gb|AF456674.1| HIV-1 isolate AR10800 from Argentina pol protein ... 40 4.4
44dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
45emb|AL845550.13| Zebrafish DNA sequence from clone CH211-121D13 ... 40 4.4
46gb|AY771449.1| HIV-1 isolate BREPMPOL097 from Brazil pol protein... 40 4.4
47gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 ... 40 4.4
48gb|AC101682.8| Mus musculus chromosome 18, clone RP23-183C23, co... 40 4.4
49gb|AY855766.1| HIV-1 isolate 860A from Italy pol protein (pol) g... 40 4.4
50gb|AY365755.1| HIV-1 isolate 106677 from Argentina pol protein (... 40 4.4 
>gb|AC118255.32| Mus musculus chromosome 8, clone RP24-89A4, complete sequence
          Length = 200858

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 193   gcgcgcgccggccggcccaag 213
             |||||||||||||||||||||
Sbjct: 15455 gcgcgcgccggccggcccaag 15435
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      tagtagctgcctagctggtta 133
                |||||||||||||||||||||
Sbjct: 26520634 tagtagctgcctagctggtta 26520654



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 123      ctagctggttaattcgcgcctcga 146
                |||||||||||||||| |||||||
Sbjct: 24633082 ctagctggttaattcgtgcctcga 24633059
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>ref|XM_724829.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00213)
           partial mRNA
          Length = 924

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 2   attaataaattaatcaataca 22
           |||||||||||||||||||||
Sbjct: 659 attaataaattaatcaataca 639
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 289     gccgcgctgctggtgcagcgc 309
               |||||||||||||||||||||
Sbjct: 2766401 gccgcgctgctggtgcagcgc 2766421



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     cagcgcggccgtcggcggca 323
               ||||||||||||||||||||
Sbjct: 2034614 cagcgcggccgtcggcggca 2034595
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>gb|AC137157.3| Mus musculus BAC clone RP23-377M11 from chromosome 8, complete sequence
          Length = 187666

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 193    gcgcgcgccggccggcccaag 213
              |||||||||||||||||||||
Sbjct: 145291 gcgcgcgccggccggcccaag 145271
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      tagtagctgcctagctggtta 133
                |||||||||||||||||||||
Sbjct: 26611957 tagtagctgcctagctggtta 26611977



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 123      ctagctggttaattcgcgcctcga 146
                |||||||||||||||| |||||||
Sbjct: 24550551 ctagctggttaattcgtgcctcga 24550528
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>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete
             sequence
          Length = 136712

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   tagtagctgcctagctggtta 133
             |||||||||||||||||||||
Sbjct: 43448 tagtagctgcctagctggtta 43468
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 184     gatgcctgagcgcgcgccggccggc 208
               |||||| ||||||||||||||||||
Sbjct: 2791069 gatgcccgagcgcgcgccggccggc 2791093
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 52      aagtagtagtactacgtgtacttgtacag 80
               ||||||||||| ||| |||||||||||||
Sbjct: 1964450 aagtagtagtagtacttgtacttgtacag 1964422
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>gb|AC159416.1| Trypanosoma brucei chromosome 8 clone RPCI93-25E9, complete sequence
          Length = 150829

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   gctcgaacagctggtgcacgtccg 278
             ||||||||||||| ||||||||||
Sbjct: 55347 gctcgaacagctgctgcacgtccg 55370



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   gctcgaacagctggtgcacgtccg 278
             ||||||||||||| ||||||||||
Sbjct: 15426 gctcgaacagctgctgcacgtccg 15403
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 255    gctcgaacagctggtgcacgtccg 278
              ||||||||||||| ||||||||||
Sbjct: 686372 gctcgaacagctgctgcacgtccg 686349
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>gb|AC091655.15| Trypanosoma brucei chromosome 5 clone RPCI93-3C6, complete sequence
          Length = 158247

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   gctcgaacagctggtgcacgtccg 278
             ||||||||||||| ||||||||||
Sbjct: 15978 gctcgaacagctgctgcacgtccg 15955
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>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence,
            complete sequence
          Length = 141691

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 123  ctagctggttaattcgcgcctcga 146
            |||||||||||||||| |||||||
Sbjct: 9268 ctagctggttaattcgtgcctcga 9245
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   gctcgaacagctggtgcacgtccg 278
             ||||||||||||| ||||||||||
Sbjct: 55347 gctcgaacagctgctgcacgtccg 55370



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   gctcgaacagctggtgcacgtccg 278
             ||||||||||||| ||||||||||
Sbjct: 15426 gctcgaacagctgctgcacgtccg 15403
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>gb|AC147427.2| Oryza sativa chromosome 3  B1394A07 genomic sequence, complete
            sequence
          Length = 175704

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 123  ctagctggttaattcgcgcctcga 146
            |||||||||||||||| |||||||
Sbjct: 2778 ctagctggttaattcgtgcctcga 2801
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>gb|AY533707.1| Fundulus heteroclitus Na-K-Cl cotransporter isoform 2 (NKCC2) mRNA,
           partial cds
          Length = 495

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 152 cctgcgcaacagaaaaatgc 171
           ||||||||||||||||||||
Sbjct: 469 cctgcgcaacagaaaaatgc 488
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 302     tgcagcgcggccgtcggcggcacg 325
               ||||||||||||| ||||||||||
Sbjct: 3812567 tgcagcgcggccggcggcggcacg 3812544
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>emb|AL672152.8| Mouse DNA sequence from clone RP23-426A16 on chromosome X, complete
              sequence
          Length = 200643

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     gtattgctagtgtacttact 42
              ||||||||||||||||||||
Sbjct: 109283 gtattgctagtgtacttact 109302
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>ref|XM_721630.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06131)
           partial mRNA
          Length = 889

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 638 ttaataaattaatcaataca 619
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>ref|XM_721118.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05709)
           partial mRNA
          Length = 831

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 619 ttaataaattaatcaataca 600
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>ref|XM_721628.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06130)
           partial mRNA
          Length = 963

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 616 ttaataaattaatcaataca 597
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>ref|XM_721764.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06244)
           partial mRNA
          Length = 975

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 619 ttaataaattaatcaataca 600
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>ref|XM_723051.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07309)
           partial mRNA
          Length = 789

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 610 ttaataaattaatcaataca 591
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>ref|XM_723311.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07501)
           partial mRNA
          Length = 816

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 637 ttaataaattaatcaataca 618
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>ref|XM_723342.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07518)
           partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 610 ttaataaattaatcaataca 591
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>ref|XM_723351.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07527)
           partial mRNA
          Length = 801

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 622 ttaataaattaatcaataca 603
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>ref|XM_724523.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01810)
           partial mRNA
          Length = 831

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 619 ttaataaattaatcaataca 600
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>ref|XM_724827.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00211)
           partial mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 622 ttaataaattaatcaataca 603
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>ref|XM_722259.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06666)
           partial mRNA
          Length = 789

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 541 ttaataaattaatcaataca 522
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>ref|XM_722260.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06667)
           partial mRNA
          Length = 852

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 619 ttaataaattaatcaataca 600
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>ref|XM_722275.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06674)
           partial mRNA
          Length = 954

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 616 ttaataaattaatcaataca 597
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>ref|XM_722586.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06920)
           partial mRNA
          Length = 873

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 622 ttaataaattaatcaataca 603
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>ref|XM_722798.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07099)
           partial mRNA
          Length = 933

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ttaataaattaatcaataca 22
           ||||||||||||||||||||
Sbjct: 622 ttaataaattaatcaataca 603
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>gb|AC006204.1| Homo sapiens PAC clone RP5-1102B4 from 7, complete sequence
          Length = 144563

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    taacagaagtagtagtacta 65
             ||||||||||||||||||||
Sbjct: 36575 taacagaagtagtagtacta 36594
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>emb|AL138714.9| Human DNA sequence from clone RP11-121J7 on chromosome 13q32.1-32.3
             Contains the 3' end of a novel gene, the 5' end of the
             GPC5 gene for glypican 5, 5 miR-precursor-13 micro RNAs
             and a CpG island, complete sequence
          Length = 106376

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     aaattaatcaatacagtatt 27
             ||||||||||||||||||||
Sbjct: 24704 aaattaatcaatacagtatt 24685
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>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 296   tgctggtgcagcgcggccgtcggc 319
             |||||||||||||||||| |||||
Sbjct: 82122 tgctggtgcagcgcggccatcggc 82099
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>gb|AC083804.13| Homo sapiens 3 BAC RP11-269P9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 106979

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     attaataaattaatcaatac 21
             ||||||||||||||||||||
Sbjct: 75385 attaataaattaatcaatac 75404
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>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136470

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 123   ctagctggttaattcgcgcctcga 146
             |||||||||||||||| |||||||
Sbjct: 65128 ctagctggttaattcgtgcctcga 65105
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>gb|AC103362.7| Mus musculus chromosome 18, clone RP24-87N19, complete sequence
          Length = 170674

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      gattaataaattaatcaatacagt 24
              ||||||||||||||||||| ||||
Sbjct: 118391 gattaataaattaatcaatccagt 118368
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 48       acagaagtagtagtactacgtgta 71
                |||||||||||| |||||||||||
Sbjct: 13306533 acagaagtagtactactacgtgta 13306556
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>gb|AC022345.2|AC022345 Drosophila melanogaster, chromosome X, region 12F-13A, BAC clone
              BACR10J19, complete sequence
          Length = 182416

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 247    tcagaactgctcgaacagctggtg 270
              |||| |||||||||||||||||||
Sbjct: 148527 tcagcactgctcgaacagctggtg 148504
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 303     gcagcgcggccgtcggcggcacga 326
               ||||||||||||||||| ||||||
Sbjct: 4559356 gcagcgcggccgtcggcagcacga 4559333
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>gb|AF456674.1| HIV-1 isolate AR10800 from Argentina pol protein (pol) gene, partial
            cds
          Length = 1269

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   taacagaagtagtagtacta 65
            ||||||||||||||||||||
Sbjct: 1163 taacagaagtagtagtacta 1182
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>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427E01
          Length = 146395

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    acagaagtagtagtactacgtgta 71
             |||||||||||| |||||||||||
Sbjct: 68343 acagaagtagtactactacgtgta 68366
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>emb|AL845550.13| Zebrafish DNA sequence from clone CH211-121D13 in linkage group 20,
             complete sequence
          Length = 163676

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     attaataaattaatcaatacagta 25
             |||||||||||||| |||||||||
Sbjct: 15761 attaataaattaatgaatacagta 15784
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>gb|AY771449.1| HIV-1 isolate BREPMPOL097 from Brazil pol protein (pol) gene, partial
            cds
          Length = 1196

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   taacagaagtagtagtacta 65
            ||||||||||||||||||||
Sbjct: 1163 taacagaagtagtagtacta 1182
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>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the
           complete sequence
          Length = 341520

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 247 tcagaactgctcgaacagctggtg 270
           |||| |||||||||||||||||||
Sbjct: 408 tcagcactgctcgaacagctggtg 385
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>gb|AC101682.8| Mus musculus chromosome 18, clone RP23-183C23, complete sequence
          Length = 227840

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      gattaataaattaatcaatacagt 24
              ||||||||||||||||||| ||||
Sbjct: 189163 gattaataaattaatcaatccagt 189186
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>gb|AY855766.1| HIV-1 isolate 860A from Italy pol protein (pol) gene, partial cds
          Length = 1302

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   taacagaagtagtagtacta 65
            ||||||||||||||||||||
Sbjct: 1163 taacagaagtagtagtacta 1182
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>gb|AY365755.1| HIV-1 isolate 106677 from Argentina pol protein (pol) gene, partial
            cds
          Length = 1497

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   taacagaagtagtagtacta 65
            ||||||||||||||||||||
Sbjct: 1163 taacagaagtagtagtacta 1182


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,687,440
Number of Sequences: 3902068
Number of extensions: 2687440
Number of successful extensions: 61276
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60517
Number of HSP's gapped (non-prelim): 759
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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