Clone Information

BLAST Search Result

Clone Name	rbaet19a05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloropl...	148	4e-36
2	PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloropl...	148	4e-36
3	PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloropl...	146	1e-35
4	PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloropl...	144	4e-35
5	PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplas...	144	5e-35
6	PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chlor...	142	2e-34
7	PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloropl...	142	3e-34
8	PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chlor...	141	3e-34
9	PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloropl...	139	2e-33
10	PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloropl...	103	1e-22
11	PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloropl...	102	2e-22
12	PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloropl...	100	1e-21
13	PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypep...	87	7e-18
14	PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypep...	81	7e-16
15	PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypep...	79	3e-15
16	PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypep...	79	3e-15
17	PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypep...	78	6e-15
18	PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypep...	74	9e-14
19	CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES pro...	34	0.075
20	MRT4_SCHPO (Q9USZ6) mRNA turnover protein 4 homolog	31	0.63
21	DP13B_MOUSE (Q8K3G9) DCC-interacting protein 13 beta (Dip13 beta...	31	0.83
22	MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial pre...	30	1.4
23	MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial p...	29	2.4
24	BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)	29	2.4
25	ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86) (A...	29	3.2
26	SDHD_BACHK (Q6HKG3) Probable D-serine dehydratase (EC 4.3.1.18) ...	28	4.1
27	SDHD_BACCZ (Q63D23) Probable D-serine dehydratase (EC 4.3.1.18) ...	28	4.1
28	LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA	28	5.4
29	MSH3_HUMAN (P20585) DNA mismatch repair protein Msh3 (Divergent ...	28	5.4
30	DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)	28	5.4
31	CH103_RHIME (Q930X9) 10 kDa chaperonin 3 (Protein Cpn10 3) (groE...	28	5.4
32	MSH3_MOUSE (P13705) DNA mismatch repair protein Msh3 (Repair-3 p...	28	7.0
33	TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein...	28	7.0
34	Y905_PICTO (Q6L0L2) UPF0215 protein PTO0905	28	7.0
35	PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase typ...	28	7.0
36	PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.0
37	PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.0
38	KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outw...	28	7.0
39	NFYA6_ARATH (Q9LVJ7) Nuclear transcription factor Y subunit A-6 ...	28	7.0
40	USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A p...	28	7.0
41	PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.0
42	KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Ou...	27	9.2
43	FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (...	27	9.2
44	DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)	27	9.2
45	PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein ...	27	9.2
46	VCAP_SHV21 (Q00999) Major capsid protein (MCP)	27	9.2
47	EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear a...	27	9.2
48	RSC6_YEAST (P25632) Chromatin structure remodeling complex prote...	27	9.2

>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  148 bits (373), Expect = 4e-36
 Identities = 72/79 (91%), Positives = 75/79 (94%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPAGGRGDEEEL KENVKN SSSTG ITLSVT+SKPETGEVIGVFES+QPSDTDL
Sbjct: 254 DNAVALPAGGRGDEEELQKENVKNTSSSTGKITLSVTQSKPETGEVIGVFESIQPSDTDL 313

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GAK PKDVKIQG+WYAQLE
Sbjct: 314 GAKVPKDVKIQGIWYAQLE 332

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>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  148 bits (373), Expect = 4e-36
 Identities = 71/79 (89%), Positives = 76/79 (96%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPAGGRGDEEEL KEN+K+ SSSTG ITLSVTKSKPETGEVIGVFES+QPSDTDL
Sbjct: 251 DNAVALPAGGRGDEEELVKENIKDVSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDL 310

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           G+KAPKDVKIQG+WYAQLE
Sbjct: 311 GSKAPKDVKIQGIWYAQLE 329

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>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score =  146 bits (369), Expect = 1e-35
 Identities = 76/81 (93%), Positives = 77/81 (95%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNA ALP GGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL
Sbjct: 247 DNAGALPRGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 306

Query: 199 GAKAPKDVKIQGVWYAQLESN 137
             +APKDVKIQGVWYAQLESN
Sbjct: 307 --EAPKDVKIQGVWYAQLESN 325

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>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  144 bits (364), Expect = 4e-35
 Identities = 70/79 (88%), Positives = 74/79 (93%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPAGGRGDEEEL KENVKN +S TG ITLSVT+SKPETGEVIGVFES+QPSDTDL
Sbjct: 251 DNAVALPAGGRGDEEELQKENVKNTASLTGKITLSVTQSKPETGEVIGVFESIQPSDTDL 310

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GAK PKDVKIQG+WYAQLE
Sbjct: 311 GAKVPKDVKIQGIWYAQLE 329

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>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  144 bits (363), Expect = 5e-35
 Identities = 71/80 (88%), Positives = 76/80 (95%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPAGGRGDEEEL KEN K+A+SS G ITLSVT++KPETGEVIGVFES+QPSDTDL
Sbjct: 250 DNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDL 309

Query: 199 GAKAPKDVKIQGVWYAQLES 140
           GAKAPKDVKIQGVWYAQLES
Sbjct: 310 GAKAPKDVKIQGVWYAQLES 329

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>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score =  142 bits (358), Expect = 2e-34
 Identities = 69/79 (87%), Positives = 72/79 (91%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPAGGRGDEEEL KENVKN ++S G ITL VTKSKPETGEVIGVFES+QPSDTDL
Sbjct: 254 DNAVALPAGGRGDEEELVKENVKNTAASVGEITLKVTKSKPETGEVIGVFESLQPSDTDL 313

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GAK PKDVKIQGVWY QLE
Sbjct: 314 GAKVPKDVKIQGVWYGQLE 332

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>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score =  142 bits (357), Expect = 3e-34
 Identities = 68/80 (85%), Positives = 73/80 (91%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPAGGRGDEEEL KENVKN +S TG IT +VTKS P+TGEVIGVFES+QPSDTDL
Sbjct: 254 DNAVALPAGGRGDEEELQKENVKNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDL 313

Query: 199 GAKAPKDVKIQGVWYAQLES 140
           GAK PKDVKIQG+WYAQLES
Sbjct: 314 GAKTPKDVKIQGIWYAQLES 333

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>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score =  141 bits (356), Expect = 3e-34
 Identities = 67/79 (84%), Positives = 73/79 (92%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPAGGRGDEEEL+KENVKN ++S G ITL +TKSKPETGEVIGVFES+QPSDTDL
Sbjct: 253 DNAVALPAGGRGDEEELSKENVKNTAASVGEITLKITKSKPETGEVIGVFESLQPSDTDL 312

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GAK PKDVKIQGVWY Q+E
Sbjct: 313 GAKVPKDVKIQGVWYGQIE 331

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>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  139 bits (349), Expect = 2e-33
 Identities = 68/79 (86%), Positives = 72/79 (91%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPAGGRGDEEEL KEN KN +SS G ITLSVT SKPETGEVIGVF+S+QPSDTDL
Sbjct: 252 DNAVALPAGGRGDEEELQKENNKNVASSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDL 311

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GAK PKDVKI+GVWYAQLE
Sbjct: 312 GAKVPKDVKIEGVWYAQLE 330

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>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 338

 Score =  103 bits (256), Expect = 1e-22
 Identities = 50/78 (64%), Positives = 58/78 (74%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           D AVALPA G  D+EE AKEN K+ ++S G I   V K   ETGE+ GVFES+QPSDTDL
Sbjct: 259 DTAVALPASG--DDEEYAKENSKSTAASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDL 316

Query: 199 GAKAPKDVKIQGVWYAQL 146
           GAK PKD+K  GVWYAQ+
Sbjct: 317 GAKVPKDIKTSGVWYAQI 334

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>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 291

 Score =  102 bits (254), Expect = 2e-22
 Identities = 51/79 (64%), Positives = 59/79 (74%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPA  R D EEL KENVK   +  G+   SV K  P TGE+ GVFES+QPSDTDL
Sbjct: 215 DNAVALPA--RADAEELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDL 272

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GAK PKD+K+ G+WYAQL+
Sbjct: 273 GAKPPKDIKVTGLWYAQLK 291

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>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 293

 Score =  100 bits (248), Expect = 1e-21
 Identities = 50/78 (64%), Positives = 57/78 (73%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPA  R D EEL KENVK+  +  G+   SV K    TGE+ GVFES+QPSDTDL
Sbjct: 216 DNAVALPA--RADAEELLKENVKSTKALKGSAVFSVAKVNTATGEIAGVFESIQPSDTDL 273

Query: 199 GAKAPKDVKIQGVWYAQL 146
           GAK PKD+KI G+WY QL
Sbjct: 274 GAKPPKDIKITGLWYGQL 291

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>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 273

 Score = 87.4 bits (215), Expect = 7e-18
 Identities = 43/79 (54%), Positives = 57/79 (72%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPA  + D+E+L + NVK A    G I+L + K    +GE+ G FES QPSDTDL
Sbjct: 197 DNAVALPA--QADDEDLTRTNVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDL 254

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GA  PK+VKI+G++YA++E
Sbjct: 255 GADEPKEVKIRGIFYARVE 273

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>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 275

 Score = 80.9 bits (198), Expect = 7e-16
 Identities = 44/78 (56%), Positives = 56/78 (71%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALPA    D+E+ A  NVK      G+I+L VTK    TGE+ GVF+S QPSDTDL
Sbjct: 198 DNAVALPA--TADKEDYA--NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDL 253

Query: 199 GAKAPKDVKIQGVWYAQL 146
           GAK P +VKI+G++YA++
Sbjct: 254 GAKEPVEVKIRGIFYARV 271

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>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 42/79 (53%), Positives = 54/79 (68%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           D+A+ALP   +  EEELA+ NVK  S + G I+L+V K    TGE+ G FES Q SD D+
Sbjct: 195 DSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDM 251

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GA  P +VKIQGV+YA +E
Sbjct: 252 GAHEPHEVKIQGVFYASIE 270

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>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 42/79 (53%), Positives = 54/79 (68%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           D+A+ALP   +  EEELA+ NVK  S + G I+L+V K    TGE+ G FES Q SD D+
Sbjct: 195 DSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDM 251

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           GA  P +VKIQGV+YA +E
Sbjct: 252 GAHEPHEVKIQGVFYASIE 270

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>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 277

 Score = 77.8 bits (190), Expect = 6e-15
 Identities = 39/79 (49%), Positives = 55/79 (69%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           ++AVA+P+ G  D E+L KENVK   +  G I+L+V+K    TGEV GVF ++QPSDTD+
Sbjct: 197 ESAVAIPSAG--DAEDLTKENVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDM 254

Query: 199 GAKAPKDVKIQGVWYAQLE 143
           G K   DVK+ G +Y ++E
Sbjct: 255 GGKEAVDVKLVGQFYGRIE 273

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>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 274

 Score = 73.9 bits (180), Expect = 9e-14
 Identities = 36/81 (44%), Positives = 53/81 (65%)
 Frame = -3

Query: 379 DNAVALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           DNAVALP+       +  + N K      G ++L VT+    TGE+ G+FES QPSDTDL
Sbjct: 198 DNAVALPSAA-----DKFRTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDL 252

Query: 199 GAKAPKDVKIQGVWYAQLESN 137
           GAK P DVK++G++Y +++++
Sbjct: 253 GAKEPLDVKVRGIFYGRVDTD 273

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>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 94

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = -3

Query: 331 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 170
           +AKE  K      G +  SV K KP+TGEVI V E       + G K P +VKI
Sbjct: 13  VAKEEEKTVG---GIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60

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>MRT4_SCHPO (Q9USZ6) mRNA turnover protein 4 homolog|
          Length = 241

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 370 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES-VQPSDTDLGA 194
           V   A G   EEE A+   K      G + L  T SKP+  EVIG FES VQ      GA
Sbjct: 72  VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPD--EVIGYFESFVQNDFARAGA 129

Query: 193 KAP 185
            AP
Sbjct: 130 VAP 132

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>DP13B_MOUSE (Q8K3G9) DCC-interacting protein 13 beta (Dip13 beta) (Adapter|
           protein containing PH domain, PTB domain and leucine
           zipper motif 2)
          Length = 662

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 352 GRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQ 218
           G+  E   + +N+KN+     NI    T S PET E+I     +Q
Sbjct: 405 GKKQESSCSSQNIKNSDIEDDNIVPKATASIPETEELIAPGTPIQ 449

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>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1)
          Length = 373

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 220 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 89
           QP    +     KD+K++G W +Q + N S  E K  ILI C  IR
Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336

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>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38)
          Length = 373

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 220 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 95
           QP    +     KD+K++G W +Q + N S  E K LI   C
Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332

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>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +3

Query: 36  YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 215
           Y H     S ++ PP  P +  Q+M+  TS+     ++     PW  +S  A+ P + S 
Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS- 528

Query: 216 GCTLSKTPITSPVSGLL 266
             + S +  +SP + ++
Sbjct: 529 ASSSSSSSASSPAAAVV 545

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>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 330

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -3

Query: 283 TLSVTKSKPETGEVIGVFESVQPSD 209
           +LSV+K+K E  EV+GV E VQ SD
Sbjct: 52  SLSVSKAKKEGFEVLGVKELVQQSD 76

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>SDHD_BACHK (Q6HKG3) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine|
           deaminase) (DSD)
          Length = 446

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 340 EEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES 224
           +  L++ENVK+A          + K  PET E  G+ ES
Sbjct: 39  DSPLSEENVKDAEERLKRFASYIAKVFPETKETKGIIES 77

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>SDHD_BACCZ (Q63D23) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine|
           deaminase) (DSD)
          Length = 446

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 340 EEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES 224
           +  L++ENVK+A          + K  PET E  G+ ES
Sbjct: 39  DSPLSEENVKDAEERLKRFASYIAKVFPETKETKGIIES 77

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>LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA|
          Length = 598

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 96  HAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSGLLLVT 275
           +A ++ IFT   +  D        W++ ++  +    V D  TL++ P   P+ G   V 
Sbjct: 233 NADRLGIFTPKRVDRDVLGCGEVGWLVCAIKDILGAPVGDTLTLARQPAEKPLPGFKKVK 292

Query: 276 LRV---MLPVEED 305
            +V   + PV  D
Sbjct: 293 PQVYAGLFPVSSD 305

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>MSH3_HUMAN (P20585) DNA mismatch repair protein Msh3 (Divergent upstream|
           protein) (DUP) (Mismatch repair protein 1) (MRP1)
          Length = 1137

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -3

Query: 325 KENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPS 212
           KENV++     GNI + +   +P TGEV  VF+S Q S
Sbjct: 375 KENVRDKKK--GNIFIGIVGVQPATGEV--VFDSFQDS 408

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>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)|
          Length = 984

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 38  HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 178
           H  +   +D  +S     Y    DEY  FC+   +L  ++P T D D
Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248

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>CH103_RHIME (Q930X9) 10 kDa chaperonin 3 (Protein Cpn10 3) (groES protein 3)|
          Length = 105

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -3

Query: 310 NASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 170
           N  S  G I     K KP+ GEVI V      S  + G   P DVKI
Sbjct: 18  NTQSKGGIIIPDTAKEKPQEGEVIAVGPG---SRDESGKLIPLDVKI 61

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>MSH3_MOUSE (P13705) DNA mismatch repair protein Msh3 (Repair-3 protein)|
           (REP-1)
          Length = 1091

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 325 KENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 200
           KEN+K+     GN+++ V   +P TGEV  VF+  Q S + L
Sbjct: 333 KENIKDKKK--GNLSVGVVGVQPATGEV--VFDCFQDSASRL 370

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>TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein tibA)|
          Length = 989

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 256 ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWY 155
           E G  + VF+  Q SDT +G+    DV+  GV Y
Sbjct: 347 ENGGYLTVFDGHQASDTMVGSDGTLDVRSGGVLY 380

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>Y905_PICTO (Q6L0L2) UPF0215 protein PTO0905|
          Length = 186

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 319 NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKA 188
           ++KN + +TG   +S+T+ +P    +I       P   D   KA
Sbjct: 84  DIKNINEATGVPVISITRREPNIQRIISAVSRYFPEKVDRALKA 127

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>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Diph
          Length = 416

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 25  FILDTHTNTLLPRFFPLHRPT 87
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Di
          Length = 416

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 25  FILDTHTNTLLPRFFPLHRPT 87
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Di
          Length = 416

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 25  FILDTHTNTLLPRFFPLHRPT 87
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward|
           rectifying potassium channel protein TREK-2) (TREK-2
           K(+) channel subunit)
          Length = 538

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 68  FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 187
           F S+ + T A  K E+L  H C +   LE  + H LD D  G
Sbjct: 97  FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138

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>NFYA6_ARATH (Q9LVJ7) Nuclear transcription factor Y subunit A-6 (AtNF-YA-6)|
          Length = 308

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 343 DEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDT 206
           D       NV+ +SS T N TLS+T    +TG  +  ++S     T
Sbjct: 19  DNSVFTNSNVQGSSSLTDNNTLSLTMEMKQTGFQMQHYDSSSTQST 64

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>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 47   THCCLDSFLSTDQPTYACTKDEYL 118
            T  C D  L   QP Y+C +D+Y+
Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203

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>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II alpha) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha)
           (PIP5KII-alpha
          Length = 405

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 25  FILDTHTNTLLPRFFPLHRPT 87
           FI++ H NTLLP+F  ++R T
Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184

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>KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Outward|
           rectifying potassium channel protein TREK-2) (TREK-2
           K(+) channel subunit)
          Length = 538

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 68  FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 187
           F S+ + T A  K E+L  H C +   LE  + H LD D  G
Sbjct: 97  FESSQKNTIALEKAEFLRDHVCVSPQELETLIQHALDADNAG 138

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>FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (Protein fat)|
          Length = 5147

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = -3

Query: 313  KNASSSTGNITLSVTKSKPETGE----VIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 146
            K  S     IT+      P T       + +F    PS+  L    P D+ I G +  +L
Sbjct: 3736 KQKSQHLLTITVLDQNDNPSTTRSLHIAVSLFNGDLPSNVKLADVRPNDIDIVGDYRCRL 3795

Query: 145  ESN*SIAEVKILIFCAC 95
            + N + +++++ I  AC
Sbjct: 3796 QKNPAQSQLQLAIPRAC 3812

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>DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)|
          Length = 986

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 38  HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 178
           H  +   +D  +S     Y    DEY  FC+   +L   +P T D D
Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYARFCFMYHKLPTEIPETHDDD 248

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>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein|
           (Polycystin-1L1) (Fragment)
          Length = 531

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 24  FYTRYTHK----HIVASILSSPPTNPRMHAQKMSI 116
           FY+++T      HI  S+ S PP+   +H Q++++
Sbjct: 199 FYSKFTEYLEDFHIWLSLYSQPPSRSYLHTQRLAV 233

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>VCAP_SHV21 (Q00999) Major capsid protein (MCP)|
          Length = 1371

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = +3

Query: 36  YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 215
           YT + +  ++ S   +  + H    S F      L  S  Y    +   +GA+   +V  
Sbjct: 198 YTERGLKKNVKSDLISMFKTHLVNNSFFLDKSEHLPHSRQYVLGILTEMIGAVCKETVFK 257

Query: 216 GCTLSKTPITSPVSGLLLVTLRVM 287
           G +   T    P+SG+L  T +VM
Sbjct: 258 GISTYSTANGQPISGVLETTDKVM 281

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>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)|
           (EBNA-6) (EBNA-3C) (EBNA-4B)
          Length = 992

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 154 RTTHPGS*HPWAPW 195
           R+ HP   HPWAPW
Sbjct: 799 RSQHPCYRHPWAPW 812

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>RSC6_YEAST (P25632) Chromatin structure remodeling complex protein RSC6|
           (Remodel the structure of chromatin complex subunit 6)
          Length = 483

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 352 GRGDEEELAKENV-KNASSSTGNITLSVTKSKPETGEV 242
           G  D E+ + EN  KN +     +  S  K KPE GEV
Sbjct: 276 GSNDAEDSSNENNNKNGAGDDDGVEGSTPKDKPELGEV 313


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,965,763
Number of Sequences: 219361
Number of extensions: 759014
Number of successful extensions: 3111
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 3053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3107
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result