ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet18h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187347.2| Oryza sativa (japonica cultivar-group), mRNA 111 1e-21
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
3dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
4dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
5dbj|AK070990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
6ref|NM_174259.2| Bos taurus calpain 1, (mu/I) large subunit (CAP... 42 0.98
7emb|AL590286.12| Human DNA sequence from clone RP11-157L10 on ch... 42 0.98
8emb|AL356137.10| Human DNA sequence from clone RP11-515I12 on ch... 42 0.98
9emb|AL137182.9| Human DNA sequence from clone RP1-257A15 on chro... 42 0.98
10gb|AC183605.3| Pan troglodytes BAC clone CH251-334E18 from chrom... 42 0.98
11gb|AC092318.2| Homo sapiens chromosome 5 clone RPCI-1_86A12, com... 42 0.98
12ref|XM_695430.1| PREDICTED: Danio rerio similar to FAT tumor sup... 42 0.98
13dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21,... 42 0.98
14gb|AF221129.1|AF221129 Bos taurus micromolar calcium-dependent n... 42 0.98
15gb|AC004021.1|AC004021 Human PAC clone RP1-186K10 from 5q31, com... 42 0.98
16emb|CR388051.22| Zebrafish DNA sequence from clone CH211-239B6 i... 42 0.98
17dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 0.98
18gb|AC004391.1|AC004391 Homo sapiens Cosmid g5129s018, complete s... 42 0.98
19dbj|AP000228.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL... 42 0.98
20dbj|AP000140.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL... 42 0.98
21dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related... 42 0.98
22gb|AC124410.4| Mus musculus BAC clone RP24-266J11 from chromosom... 40 3.9
23emb|BX248419.4| Human DNA sequence from clone DASS-254G14 on chr... 40 3.9
24emb|AL844220.3| Human DNA sequence from clone DAQB-44E15 on chro... 40 3.9
25emb|AL662832.5| Human DNA sequence from clone XXbac-141O14 on ch... 40 3.9
26emb|AL662782.3| Human DNA sequence from clone XXbac-252N6 on chr... 40 3.9
27emb|AL513011.7| Human DNA sequence from clone RP11-284O5 on chro... 40 3.9
28emb|AL080284.20|HSJ177I10 Human DNA sequence from clone RP1-177I... 40 3.9
29gb|AC131053.2| Homo sapiens chromosome 18, clone RP11-348G23, co... 40 3.9
30emb|CR388382.5| Human DNA sequence from clone DADB-23P23 on chro... 40 3.9
31gb|AC010188.29| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Ca... 40 3.9
32gb|AC099848.2| Homo sapiens chromosome 18, clone RP11-856F24, co... 40 3.9
33gb|AC097508.3| Homo sapiens BAC clone RP11-380P13 from 4, comple... 40 3.9
34gb|AC163694.2| Mus musculus BAC clone RP24-80O2 from chromosome ... 40 3.9
35dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
36emb|BX927189.6| Human DNA sequence from clone DAMA-83L10 on chro... 40 3.9
37gb|AC046135.15| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Can... 40 3.9
38gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, com... 40 3.9
39gb|AC138777.3| Homo sapiens BAC clone RP11-1220P14 from 2, compl... 40 3.9
40gb|AC008506.7|AC008506 Homo sapiens chromosome 5 clone CTC-447O6... 40 3.9
41dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 3.9
42dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
43dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
44dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 3.9
45gb|AF042275.1|AF042275 Oryza sativa anther-specific protein gene... 40 3.9
46emb|BX247867.7| Zebrafish DNA sequence from clone CH211-268D5 in... 40 3.9
47gb|AC004191.1|AC004191 Homo sapiens clone UWGC:y18c296 from 6p21... 40 3.9
48emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chro... 40 3.9
49gb|AC091681.44| Mus musculus strain C57BL/6J chromosome 10 clone... 40 3.9
50emb|AL691505.12| Mouse DNA sequence from clone RP23-82B19 on chr... 40 3.9
51dbj|AB023053.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 3.9 
>ref|NM_187347.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 935

 Score =  111 bits (56), Expect = 1e-21
 Identities = 127/147 (86%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                       
Query: 124 attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtcattctttgaga 183
           ||||||||||||| ||||||| || ||||| |||||||||| |    ||  |||||||||
Sbjct: 888 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 830

                                                                       
Query: 184 tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 241
           ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 829 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 771

                                      
Query: 242 tcaactcacattctaaagatgtagatg 268
           ||| ||||||||||||| ||| |||||
Sbjct: 770 tcagctcacattctaaaaatgaagatg 744
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  111 bits (56), Expect = 1e-21
 Identities = 127/147 (86%), Gaps = 4/147 (2%)
 Strand = Plus / Plus

                                                                            
Query: 124      attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtcattctttgaga 183
                ||||||||||||| ||||||| || ||||| |||||||||| |    ||  |||||||||
Sbjct: 18479015 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 18479073

                                                                            
Query: 184      tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 241
                ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 18479074 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 18479132

                                           
Query: 242      tcaactcacattctaaagatgtagatg 268
                ||| ||||||||||||| ||| |||||
Sbjct: 18479133 tcagctcacattctaaaaatgaagatg 18479159
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1457_D07
          Length = 103688

 Score =  111 bits (56), Expect = 1e-21
 Identities = 127/147 (86%), Gaps = 4/147 (2%)
 Strand = Plus / Plus

                                                                        
Query: 124  attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtcattctttgaga 183
            ||||||||||||| ||||||| || ||||| |||||||||| |    ||  |||||||||
Sbjct: 7771 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 7829

                                                                        
Query: 184  tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 241
            ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 7830 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 7888

                                       
Query: 242  tcaactcacattctaaagatgtagatg 268
            ||| ||||||||||||| ||| |||||
Sbjct: 7889 tcagctcacattctaaaaatgaagatg 7915
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>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_B11
          Length = 102824

 Score =  111 bits (56), Expect = 1e-21
 Identities = 127/147 (86%), Gaps = 4/147 (2%)
 Strand = Plus / Plus

                                                                         
Query: 124   attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtcattctttgaga 183
             ||||||||||||| ||||||| || ||||| |||||||||| |    ||  |||||||||
Sbjct: 70863 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 70921

                                                                         
Query: 184   tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 241
             ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 70922 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 70980

                                        
Query: 242   tcaactcacattctaaagatgtagatg 268
             ||| ||||||||||||| ||| |||||
Sbjct: 70981 tcagctcacattctaaaaatgaagatg 71007
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>dbj|AK070990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O13, full
           insert sequence
          Length = 935

 Score =  111 bits (56), Expect = 1e-21
 Identities = 127/147 (86%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                       
Query: 124 attacaaaaatccttgcaggactcgaagttgaaagaagaaatacaagtcattctttgaga 183
           ||||||||||||| ||||||| || ||||| |||||||||| |    ||  |||||||||
Sbjct: 888 attacaaaaatccatgcaggagtc-aagttaaaagaagaaacagggttctgtctttgaga 830

                                                                       
Query: 184 tggagtataatttatttaagatcattccctccatcc--tcattcattgagtttgcaggct 241
           ||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  ||
Sbjct: 829 tggagtataatttatttaagatcattccctccatcccatcatcca-tgagtttgcaaact 771

                                      
Query: 242 tcaactcacattctaaagatgtagatg 268
           ||| ||||||||||||| ||| |||||
Sbjct: 770 tcagctcacattctaaaaatgaagatg 744
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>ref|NM_174259.2| Bos taurus calpain 1, (mu/I) large subunit (CAPN1), mRNA
          Length = 2948

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 225  cattgagtttgcaggcttcaa 245
            |||||||||||||||||||||
Sbjct: 2012 cattgagtttgcaggcttcaa 2032
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>emb|AL590286.12| Human DNA sequence from clone RP11-157L10 on chromosome 6 Contains a
             ribosomal protein L34 (RPL34) pseudogene, complete
             sequence
          Length = 65756

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 118   attaccattacaaaaatccttgcag 142
             ||||||||||||||||| |||||||
Sbjct: 65442 attaccattacaaaaatacttgcag 65418
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>emb|AL356137.10| Human DNA sequence from clone RP11-515I12 on chromosome 6, complete
             sequence
          Length = 135837

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 114   aaatattaccattacaaaaat 134
             |||||||||||||||||||||
Sbjct: 54994 aaatattaccattacaaaaat 55014
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>emb|AL137182.9| Human DNA sequence from clone RP1-257A15 on chromosome 6 Contains
            part of a novel gene, part of the gene for a novel
            protein (FLJ32724) and a CpG island, complete sequence
          Length = 120988

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 118  attaccattacaaaaatccttgcag 142
            ||||||||||||||||| |||||||
Sbjct: 1686 attaccattacaaaaatacttgcag 1662
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>gb|AC183605.3| Pan troglodytes BAC clone CH251-334E18 from chromosome 4, complete
              sequence
          Length = 191017

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 148    gaagttgaaagaagaaataca 168
              |||||||||||||||||||||
Sbjct: 162788 gaagttgaaagaagaaataca 162808
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>gb|AC092318.2| Homo sapiens chromosome 5 clone RPCI-1_86A12, complete sequence
          Length = 91803

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   gatggagtataatttatttaa 202
             |||||||||||||||||||||
Sbjct: 39942 gatggagtataatttatttaa 39922
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>ref|XM_695430.1| PREDICTED: Danio rerio similar to FAT tumor suppressor homolog 3
           (LOC571803), partial mRNA
          Length = 2850

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 132 aatccttgcaggactcgaagt 152
           |||||||||||||||||||||
Sbjct: 672 aatccttgcaggactcgaagt 652
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>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete
             sequences
          Length = 203521

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   agatcattccctccatcctca 222
             |||||||||||||||||||||
Sbjct: 39616 agatcattccctccatcctca 39596
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>gb|AF221129.1|AF221129 Bos taurus micromolar calcium-dependent neutral protease large
            subunit (CAPN1) mRNA, complete cds
          Length = 2948

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 225  cattgagtttgcaggcttcaa 245
            |||||||||||||||||||||
Sbjct: 2012 cattgagtttgcaggcttcaa 2032
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>gb|AC004021.1|AC004021 Human PAC clone RP1-186K10 from 5q31, complete sequence
          Length = 171370

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    gatggagtataatttatttaa 202
              |||||||||||||||||||||
Sbjct: 156928 gatggagtataatttatttaa 156908
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>emb|CR388051.22| Zebrafish DNA sequence from clone CH211-239B6 in linkage group 15,
            complete sequence
          Length = 120027

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  aatccttgcaggactcgaagt 152
            |||||||||||||||||||||
Sbjct: 3339 aatccttgcaggactcgaagt 3359
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>dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, section 38/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 202    agatcattccctccatcctca 222
              |||||||||||||||||||||
Sbjct: 234321 agatcattccctccatcctca 234301
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>gb|AC004391.1|AC004391 Homo sapiens Cosmid g5129s018, complete sequence
          Length = 38649

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 114  aaatattaccattacaaaaat 134
            |||||||||||||||||||||
Sbjct: 5274 aaatattaccattacaaaaat 5294
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>dbj|AP000228.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region,
             clone:R49K20, complete sequence
          Length = 75698

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   agatcattccctccatcctca 222
             |||||||||||||||||||||
Sbjct: 27823 agatcattccctccatcctca 27803
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>dbj|AP000140.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone
             B2291C14-R44F3, segment 5/10, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   agatcattccctccatcctca 222
             |||||||||||||||||||||
Sbjct: 33617 agatcattccctccatcctca 33597
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>dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533
             region, segment 5/7
          Length = 161014

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   agatcattccctccatcctca 222
             |||||||||||||||||||||
Sbjct: 33617 agatcattccctccatcctca 33597
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>gb|AC124410.4| Mus musculus BAC clone RP24-266J11 from chromosome 7, complete sequence
          Length = 162876

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     agcacttgattttggaacac 109
              ||||||||||||||||||||
Sbjct: 101450 agcacttgattttggaacac 101469
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>emb|BX248419.4| Human DNA sequence from clone DASS-254G14 on chromosome 6, complete
             sequence
          Length = 122321

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aaaagaacatcaaaatgtaa 288
             ||||||||||||||||||||
Sbjct: 81150 aaaagaacatcaaaatgtaa 81131
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>emb|AL844220.3| Human DNA sequence from clone DAQB-44E15 on chromosome 6 Contains the
             TRIM10 gene for tripartite motif-containing 10, the TRIM15
             gene for tripartite motif-containing 15, the TRIM26 gene
             for tripartite motif-containing 26, the PAIP1P1 pseudogene
             for poly(A) binding protein interacting protein 1
             pseudogene 1, the HCG17 gene for HLA complex group 17, the
             TRIM26P pseudogene for tripartite motif-containing 26, the
             HLA-L pseudogene for major histocompatibility complex,
             class I, L, the 3' end of the HCG18 gene for HLA complex
             group 18 and 3 CpG islands, complete sequence
          Length = 152298

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aaaagaacatcaaaatgtaa 288
             ||||||||||||||||||||
Sbjct: 97570 aaaagaacatcaaaatgtaa 97551
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>emb|AL662832.5| Human DNA sequence from clone XXbac-141O14 on chromosome 6 contains the
             5' end of the TRIM26 gene for tripartite motif containing
             26, two putative novel transcript, a  tripartite motif
             containing 26 (TRIM26) pseudogene, a MHC class 1
             pseudogene, the TRIM39 gene for tripartite motif
             containing 39, the RPP21 gene for ribonuclease p subunit
             and four CpG islands, complete sequence
          Length = 161348

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aaaagaacatcaaaatgtaa 288
             ||||||||||||||||||||
Sbjct: 57065 aaaagaacatcaaaatgtaa 57046
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>emb|AL662782.3| Human DNA sequence from clone XXbac-252N6 on chromosome 6 contains a
             putative novel transcript, a tripartite motif containing
             26 (TRIM26) pseudogene, a MHC class 1 pseudogene and two
             CpG islands, complete sequence
          Length = 62456

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aaaagaacatcaaaatgtaa 288
             ||||||||||||||||||||
Sbjct: 40354 aaaagaacatcaaaatgtaa 40335
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>emb|AL513011.7| Human DNA sequence from clone RP11-284O5 on chromosome 6, complete
             sequence
          Length = 157204

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 110   agtaaaatattaccattacaaaaa 133
             ||||||||||||||||| ||||||
Sbjct: 94656 agtaaaatattaccattgcaaaaa 94679
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>emb|AL080284.20|HSJ177I10 Human DNA sequence from clone RP1-177I10 on chromosome 6q16.1-16.3
              Contains a novel gene, complete sequence
          Length = 160750

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    gaacatcaaaatgtaagatg 292
              ||||||||||||||||||||
Sbjct: 130820 gaacatcaaaatgtaagatg 130801
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>gb|AC131053.2| Homo sapiens chromosome 18, clone RP11-348G23, complete sequence
          Length = 191115

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    aagttgaaagaagaaataca 168
              ||||||||||||||||||||
Sbjct: 163525 aagttgaaagaagaaataca 163506
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>emb|CR388382.5| Human DNA sequence from clone DADB-23P23 on chromosome 6, complete
             sequence
          Length = 109067

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aaaagaacatcaaaatgtaa 288
             ||||||||||||||||||||
Sbjct: 85364 aaaagaacatcaaaatgtaa 85345
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>gb|AC010188.29| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 158591

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tataatttatttaagatcat 208
             ||||||||||||||||||||
Sbjct: 14142 tataatttatttaagatcat 14123
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>gb|AC099848.2| Homo sapiens chromosome 18, clone RP11-856F24, complete sequence
          Length = 132288

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aagttgaaagaagaaataca 168
             ||||||||||||||||||||
Sbjct: 97611 aagttgaaagaagaaataca 97592
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>gb|AC097508.3| Homo sapiens BAC clone RP11-380P13 from 4, complete sequence
          Length = 107523

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    caatttgactggaattatgaaatg 33
             ||||||| ||||||||||||||||
Sbjct: 57973 caatttggctggaattatgaaatg 57996
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>gb|AC163694.2| Mus musculus BAC clone RP24-80O2 from chromosome 16, complete sequence
          Length = 244730

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    taaaatattaccattacaaa 131
              ||||||||||||||||||||
Sbjct: 156887 taaaatattaccattacaaa 156868
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 265      gatgaaaagaacatcaaaat 284
                ||||||||||||||||||||
Sbjct: 18401920 gatgaaaagaacatcaaaat 18401901
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>emb|BX927189.6| Human DNA sequence from clone DAMA-83L10 on chromosome 6, complete
             sequence
          Length = 124330

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   aaaagaacatcaaaatgtaa 288
             ||||||||||||||||||||
Sbjct: 52579 aaaagaacatcaaaatgtaa 52560
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>gb|AC046135.15| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175833

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    tataatttatttaagatcat 208
              ||||||||||||||||||||
Sbjct: 153293 tataatttatttaagatcat 153312
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>gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, complete sequence
          Length = 185668

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    taaagatgtagatgaaaaga 274
              ||||||||||||||||||||
Sbjct: 119117 taaagatgtagatgaaaaga 119098
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>gb|AC138777.3| Homo sapiens BAC clone RP11-1220P14 from 2, complete sequence
          Length = 220281

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ttgactggaattatgaaatg 33
              ||||||||||||||||||||
Sbjct: 204342 ttgactggaattatgaaatg 204323
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>gb|AC008506.7|AC008506 Homo sapiens chromosome 5 clone CTC-447O6, complete sequence
          Length = 191557

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    tttgagatggagtataattt 196
              ||||||||||||||||||||
Sbjct: 169055 tttgagatggagtataattt 169074
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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     aaaagaacatcaaaatgtaa 288
               ||||||||||||||||||||
Sbjct: 1695625 aaaagaacatcaaaatgtaa 1695644
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463G11
          Length = 154188

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    gatgaaaagaacatcaaaat 284
              ||||||||||||||||||||
Sbjct: 116656 gatgaaaagaacatcaaaat 116637
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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463D04
          Length = 145828

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   gatgaaaagaacatcaaaat 284
             ||||||||||||||||||||
Sbjct: 63794 gatgaaaagaacatcaaaat 63775
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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     aaaagaacatcaaaatgtaa 288
               ||||||||||||||||||||
Sbjct: 1238090 aaaagaacatcaaaatgtaa 1238109
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>gb|AF042275.1|AF042275 Oryza sativa anther-specific protein gene, complete cds
          Length = 2757

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 gatgaaaagaacatcaaaat 284
           ||||||||||||||||||||
Sbjct: 664 gatgaaaagaacatcaaaat 645
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>emb|BX247867.7| Zebrafish DNA sequence from clone CH211-268D5 in linkage group 24,
             complete sequence
          Length = 146928

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   taaaatattaccattacaaa 131
             ||||||||||||||||||||
Sbjct: 68466 taaaatattaccattacaaa 68447
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>gb|AC004191.1|AC004191 Homo sapiens clone UWGC:y18c296 from 6p21, complete sequence
          Length = 45601

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   aaaagaacatcaaaatgtaa 288
             ||||||||||||||||||||
Sbjct: 21938 aaaagaacatcaaaatgtaa 21957
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>emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chromosome 2, complete
              sequence
          Length = 173053

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    taaaatattaccattacaaa 131
              ||||||||||||||||||||
Sbjct: 165786 taaaatattaccattacaaa 165767
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>gb|AC091681.44| Mus musculus strain C57BL/6J chromosome 10 clone rp23-111d4, complete
              sequence
          Length = 194809

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    cattctttgagatggagtataatt 195
              ||||| ||||||||||||||||||
Sbjct: 189077 cattcattgagatggagtataatt 189100
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>emb|AL691505.12| Mouse DNA sequence from clone RP23-82B19 on chromosome 10, complete
              sequence
          Length = 220450

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    cattctttgagatggagtataatt 195
              ||||| ||||||||||||||||||
Sbjct: 180400 cattcattgagatggagtataatt 180377
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>dbj|AB023053.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
            clone:53L9, complete sequence
          Length = 14868

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  aaaagaacatcaaaatgtaa 288
            ||||||||||||||||||||
Sbjct: 3910 aaaagaacatcaaaatgtaa 3929


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,457,225
Number of Sequences: 3902068
Number of extensions: 4457225
Number of successful extensions: 94544
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94361
Number of HSP's gapped (non-prelim): 178
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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