ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet18e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LYAM2_PIG (P98110) E-selectin precursor (Endothelial leukocyte a... 34 0.11
2LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte... 31 0.91
3LYAM2_CANFA (P33730) E-selectin precursor (Endothelial leukocyte... 29 2.6
4CCA1_SCHPO (Q9UTQ0) Probable tRNA nucleotidyltransferase (EC 2.7... 28 4.5
57UP2_DROME (P16376) Steroid receptor seven-up, isoform A 28 5.9
67UP1_DROME (P16375) Steroid receptor seven-up, isoforms B/C 28 5.9
7LYAM2_HORSE (Q95LG1) E-selectin precursor (Endothelial leukocyte... 28 7.7

>LYAM2_PIG (P98110) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 484

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 27  KQYLCLWLAATPTPTSVHAKCLQTFNITPIQMVPG 131
           K  LC   A TPT  S H +C++T N +  Q  PG
Sbjct: 135 KLALCYTAACTPTSCSGHGECIETINSSTCQCYPG 169



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>LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 485

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 27  KQYLCLWLAATPTPTSVHAKCLQTFNITPIQMVPG 131
           K  LC   A  PTP   H +C++T N    Q  PG
Sbjct: 135 KLALCYKAACNPTPCGSHGECVETINNYTCQCHPG 169



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>LYAM2_CANFA (P33730) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 611

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 27  KQYLCLWLAATPTPTSVHAKCLQTFNITPIQMVPG 131
           K  LC   A TPT  S H +C++T N    +  PG
Sbjct: 135 KLALCYTAACTPTSCSGHGECVETVNNYTCKCHPG 169



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>CCA1_SCHPO (Q9UTQ0) Probable tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA|
           adenylyltransferase) (tRNA CCA-pyrophosphorylase)
           (CCA-adding enzyme)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +3

Query: 66  PTSVHAKCLQTFNITPIQMVPGA*PVMLLLILSDRNIYNIASCN*LKLG*RFRLPKLSWY 245
           P  +H K LQ+ NI  + ++P A  +   L   D +I N++S +  K      +  L WY
Sbjct: 265 PLEIHTKKLQSKNIESLSLIPYAIDLFGYLQKKDVSIKNLSSSS--KYIFWLAIATLPWY 322

Query: 246 QKNINWNTTNDPNIHL 293
               NW+      I +
Sbjct: 323 ----NWSILEKSKIKI 334



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>7UP2_DROME (P16376) Steroid receptor seven-up, isoform A|
          Length = 746

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 33  YLCLWLAATPTPTSVHAKCLQTFNITPIQMV 125
           Y+ L L A P PTS + +C+Q  NI  I  +
Sbjct: 311 YISLLLRAEPYPTSRYGQCMQPNNIMGIDNI 341



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>7UP1_DROME (P16375) Steroid receptor seven-up, isoforms B/C|
          Length = 543

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 33  YLCLWLAATPTPTSVHAKCLQTFNITPIQMV 125
           Y+ L L A P PTS + +C+Q  NI  I  +
Sbjct: 311 YISLLLRAEPYPTSRYGQCMQPNNIMGIDNI 341



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>LYAM2_HORSE (Q95LG1) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 610

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 27  KQYLCLWLAATPTPTSVHAKCLQTFNITPIQMVPG 131
           K  LC   A T T  S H +C++T N    Q  PG
Sbjct: 133 KLALCYTAACTHTSCSGHGECVETINNYTCQCHPG 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,589,705
Number of Sequences: 219361
Number of extensions: 814175
Number of successful extensions: 2053
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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