ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet18d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065033.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 3e-38
2dbj|AB042934.1| Oryza sativa (japonica cultivar-group) mRNA for ... 167 3e-38
3ref|XM_468577.1| Oryza sativa (japonica cultivar-group), predic... 155 1e-34
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 105 9e-20
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 105 9e-20
6gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome... 105 9e-20
7gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, com... 68 2e-08
8emb|X56615.1|SORPL11 S.oleracea mRNA for chloroplast ribosomal p... 64 3e-07
9ref|NM_103032.2| Arabidopsis thaliana PRPL11 (PLASTID RIBOSOMAL ... 58 2e-05
10emb|X87296.1|ATRPL11GE A.thaliana rpl11 gene 58 2e-05
11gb|AY063070.1| Arabidopsis thaliana putative ribosomal protein L... 58 2e-05
12gb|AF370254.1| Arabidopsis thaliana putative ribosomal protein L... 58 2e-05
13gb|AF412105.1|AF412105 Arabidopsis thaliana At1g32990/F9L11_15 m... 58 2e-05
14gb|AF325023.2|AF325023 Arabidopsis thaliana At1g32990 (At1g32990... 58 2e-05
15emb|BX814569.1|CNS0AEJV Arabidopsis thaliana Full-length cDNA Co... 58 2e-05
16gb|AY085664.1| Arabidopsis thaliana clone 16773 mRNA, complete s... 58 2e-05
17gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L... 58 2e-05
18ref|NM_124540.1| Arabidopsis thaliana structural constituent of ... 48 0.017
19gb|AF184768.1|AF184768 Arabidopsis thaliana inhibitor tagged sit... 48 0.017
20dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 48 0.017
21emb|Z75542.1|CEF55D12 Caenorhabditis elegans Cosmid F55D12, comp... 42 1.1
22emb|AL035652.8|HS1J6 Human DNA sequence from clone RP1-1J6 on ch... 42 1.1
23ref|XM_790100.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 42 1.1
24emb|X73005.1|SPC6RPL1A Synechocystis PCC6803 genes for ribosomal... 42 1.1
25dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 42 1.1
26gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome 40 4.2
27ref|XM_422754.1| PREDICTED: Gallus gallus similar to Multidrug r... 40 4.2
28gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 40 4.2
29gb|AC114583.7| Mus musculus chromosome 1, clone RP23-195A24, com... 40 4.2
30gb|AC124547.4| Mus musculus BAC clone RP23-274I8 from chromosome... 40 4.2
31emb|CR847496.7| Zebrafish DNA sequence from clone CH211-203D1 in... 40 4.2
32ref|XM_545988.2| PREDICTED: Canis familiaris similar to B0416.5a... 40 4.2
33gb|AC087354.13| Homo sapiens chromosome 8, clone RP11-398H6, com... 40 4.2
34gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 4.2
35gb|AC090093.7| Homo sapiens chromosome 8, clone RP11-656A10, com... 40 4.2
36gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome... 40 4.2
37gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, co... 40 4.2
38gb|AC148019.5| Mus musculus BAC clone RP23-12B6 from chromosome ... 40 4.2
39gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cance... 40 4.2
40gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc fin... 40 4.2
41gb|AC010478.5|AC010478 Homo sapiens chromosome 5 clone CTD-2314G... 40 4.2
42emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in... 40 4.2
43dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.2
44emb|CT573093.3| CH250-1K10, complete sequence 40 4.2
45gb|U43920.1|HSU43920 Human ubi-d4 gene, partial cds 40 4.2
46gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 40 4.2 
>dbj|AK065033.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H03, full
           insert sequence
          Length = 986

 Score =  167 bits (84), Expect = 3e-38
 Identities = 228/276 (82%)
 Strand = Plus / Minus

                                                                       
Query: 47  gactagaagaccaccttctccttcttcaccaggatcggtgggtcgacatcgatgcccatg 106
           ||||| |||| |||||| ||||||||| | || || || ||||| || ||||| ||||| 
Sbjct: 682 gactacaagagcaccttttccttcttctcaagtattggagggtcaacctcgattcccata 623

                                                                       
Query: 107 ttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttcaagtca 166
           ||||| |||||||||||||| ||||||||||| || |||||| | ||||||||||| || 
Sbjct: 622 ttagcagcagtgcccgctataattctcatggccgagtcaatgctcttgcagttcaaatct 563

                                                                       
Query: 167 ggcagcttctcctgggcgatcgtgcgtacttggtccacagtcacctttccaaccttctca 226
           |||| |||||| || || || || |||||||| ||  | || || |||||||||||||| 
Sbjct: 562 ggcaacttctcttgagctattgtacgtacttgatctgctgttacttttccaaccttctct 503

                                                                       
Query: 227 cgttgtggctcctttgagcctttttcgacacctgcagccttgaggagcagtactgaggca 286
           || || || || ||||| ||||| |||| |||||| ||||||||||| || |||||||||
Sbjct: 502 cgctgcggttcttttgaacctttctcgatacctgctgccttgaggagaaggactgaggca 443

                                               
Query: 287 ggaggtgtcttgaggataaaggtgaagctcttatca 322
           ||||| ||||| | |||||||||||| || ||||||
Sbjct: 442 ggaggggtcttcaagataaaggtgaaacttttatca 407
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>dbj|AB042934.1| Oryza sativa (japonica cultivar-group) mRNA for plastid ribosomal
           protein L11, complete cds
          Length = 790

 Score =  167 bits (84), Expect = 3e-38
 Identities = 228/276 (82%)
 Strand = Plus / Minus

                                                                       
Query: 47  gactagaagaccaccttctccttcttcaccaggatcggtgggtcgacatcgatgcccatg 106
           ||||| |||| |||||| ||||||||| | || || || ||||| || ||||| ||||| 
Sbjct: 675 gactacaagagcaccttttccttcttctcaagtattggagggtcaacctcgattcccata 616

                                                                       
Query: 107 ttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttcaagtca 166
           ||||| |||||||||||||| ||||||||||| || |||||| | ||||||||||| || 
Sbjct: 615 ttagcagcagtgcccgctataattctcatggccgagtcaatgctcttgcagttcaaatct 556

                                                                       
Query: 167 ggcagcttctcctgggcgatcgtgcgtacttggtccacagtcacctttccaaccttctca 226
           |||| |||||| || || || || |||||||| ||  | || || |||||||||||||| 
Sbjct: 555 ggcaacttctcttgagctattgtacgtacttgatctgctgttacttttccaaccttctct 496

                                                                       
Query: 227 cgttgtggctcctttgagcctttttcgacacctgcagccttgaggagcagtactgaggca 286
           || || || || ||||| ||||| |||| |||||| ||||||||||| || |||||||||
Sbjct: 495 cgctgcggttcttttgaacctttctcgatacctgctgccttgaggagaaggactgaggca 436

                                               
Query: 287 ggaggtgtcttgaggataaaggtgaagctcttatca 322
           ||||| ||||| | |||||||||||| || ||||||
Sbjct: 435 ggaggggtcttcaagataaaggtgaaacttttatca 400
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>ref|XM_468577.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 666

 Score =  155 bits (78), Expect = 1e-34
 Identities = 213/258 (82%)
 Strand = Plus / Minus

                                                                       
Query: 65  tccttcttcaccaggatcggtgggtcgacatcgatgcccatgttagcggcagtgcccgct 124
           ||||||||| | || || || ||||| || ||||| ||||| ||||| ||||||||||||
Sbjct: 617 tccttcttctcaagtattggagggtcaacctcgattcccatattagcagcagtgcccgct 558

                                                                       
Query: 125 atgattctcatggcagactcaatggttttgcagttcaagtcaggcagcttctcctgggcg 184
           || ||||||||||| || |||||| | ||||||||||| || |||| |||||| || || 
Sbjct: 557 ataattctcatggccgagtcaatgctcttgcagttcaaatctggcaacttctcttgagct 498

                                                                       
Query: 185 atcgtgcgtacttggtccacagtcacctttccaaccttctcacgttgtggctcctttgag 244
           || || |||||||| ||  | || || |||||||||||||| || || || || ||||| 
Sbjct: 497 attgtacgtacttgatctgctgttacttttccaaccttctctcgctgcggttcttttgaa 438

                                                                       
Query: 245 cctttttcgacacctgcagccttgaggagcagtactgaggcaggaggtgtcttgaggata 304
           ||||| |||| |||||| ||||||||||| || |||||||||||||| ||||| | ||||
Sbjct: 437 cctttctcgatacctgctgccttgaggagaaggactgaggcaggaggggtcttcaagata 378

                             
Query: 305 aaggtgaagctcttatca 322
           |||||||| || ||||||
Sbjct: 377 aaggtgaaacttttatca 360
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  105 bits (53), Expect = 9e-20
 Identities = 173/213 (81%)
 Strand = Plus / Plus

                                                                           
Query: 47      gactagaagaccaccttctccttcttcaccaggatcggtgggtcgacatcgatgcccatg 106
               ||||| |||| |||||| ||||||||| | || || || ||||| || ||||| ||||| 
Sbjct: 1212235 gactacaagagcaccttttccttcttctcaagtattggagggtcaacctcgattcccata 1212294

                                                                           
Query: 107     ttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttcaagtca 166
               ||||| |||||||||||||| ||||||||||| || |||||| | ||||||||||| || 
Sbjct: 1212295 ttagcagcagtgcccgctataattctcatggccgagtcaatgctcttgcagttcaaatct 1212354

                                                                           
Query: 167     ggcagcttctcctgggcgatcgtgcgtacttggtccacagtcacctttccaaccttctca 226
               |||| |||||| || || || || |||||||| ||  | || || |||||||||||||| 
Sbjct: 1212355 ggcaacttctcttgagctattgtacgtacttgatctgctgttacttttccaaccttctct 1212414

                                                
Query: 227     cgttgtggctcctttgagcctttttcgacacct 259
               || || || || ||||| ||||| |||| ||||
Sbjct: 1212415 cgctgcggttcttttgaacctttctcgatacct 1212447



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                           
Query: 254     acacctgcagccttgaggagcagtactgaggcaggaggtgtcttgaggataaaggtgaag 313
               |||||||| ||||||||||| || |||||||||||||| ||||| | |||||||||||| 
Sbjct: 1213467 acacctgctgccttgaggagaaggactgaggcaggaggggtcttcaagataaaggtgaaa 1213526

                       
Query: 314     ctcttatc 321
               || |||||
Sbjct: 1213527 cttttatc 1213534
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  105 bits (53), Expect = 9e-20
 Identities = 173/213 (81%)
 Strand = Plus / Plus

                                                                           
Query: 47      gactagaagaccaccttctccttcttcaccaggatcggtgggtcgacatcgatgcccatg 106
               ||||| |||| |||||| ||||||||| | || || || ||||| || ||||| ||||| 
Sbjct: 1212233 gactacaagagcaccttttccttcttctcaagtattggagggtcaacctcgattcccata 1212292

                                                                           
Query: 107     ttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttcaagtca 166
               ||||| |||||||||||||| ||||||||||| || |||||| | ||||||||||| || 
Sbjct: 1212293 ttagcagcagtgcccgctataattctcatggccgagtcaatgctcttgcagttcaaatct 1212352

                                                                           
Query: 167     ggcagcttctcctgggcgatcgtgcgtacttggtccacagtcacctttccaaccttctca 226
               |||| |||||| || || || || |||||||| ||  | || || |||||||||||||| 
Sbjct: 1212353 ggcaacttctcttgagctattgtacgtacttgatctgctgttacttttccaaccttctct 1212412

                                                
Query: 227     cgttgtggctcctttgagcctttttcgacacct 259
               || || || || ||||| ||||| |||| ||||
Sbjct: 1212413 cgctgcggttcttttgaacctttctcgatacct 1212445



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                           
Query: 254     acacctgcagccttgaggagcagtactgaggcaggaggtgtcttgaggataaaggtgaag 313
               |||||||| ||||||||||| || |||||||||||||| ||||| | |||||||||||| 
Sbjct: 1213465 acacctgctgccttgaggagaaggactgaggcaggaggggtcttcaagataaaggtgaaa 1213524

                       
Query: 314     ctcttatc 321
               || |||||
Sbjct: 1213525 cttttatc 1213532
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>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12,
             complete sequence
          Length = 146241

 Score =  105 bits (53), Expect = 9e-20
 Identities = 173/213 (81%)
 Strand = Plus / Plus

                                                                         
Query: 47    gactagaagaccaccttctccttcttcaccaggatcggtgggtcgacatcgatgcccatg 106
             ||||| |||| |||||| ||||||||| | || || || ||||| || ||||| ||||| 
Sbjct: 17137 gactacaagagcaccttttccttcttctcaagtattggagggtcaacctcgattcccata 17196

                                                                         
Query: 107   ttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttcaagtca 166
             ||||| |||||||||||||| ||||||||||| || |||||| | ||||||||||| || 
Sbjct: 17197 ttagcagcagtgcccgctataattctcatggccgagtcaatgctcttgcagttcaaatct 17256

                                                                         
Query: 167   ggcagcttctcctgggcgatcgtgcgtacttggtccacagtcacctttccaaccttctca 226
             |||| |||||| || || || || |||||||| ||  | || || |||||||||||||| 
Sbjct: 17257 ggcaacttctcttgagctattgtacgtacttgatctgctgttacttttccaaccttctct 17316

                                              
Query: 227   cgttgtggctcctttgagcctttttcgacacct 259
             || || || || ||||| ||||| |||| ||||
Sbjct: 17317 cgctgcggttcttttgaacctttctcgatacct 17349



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                         
Query: 254   acacctgcagccttgaggagcagtactgaggcaggaggtgtcttgaggataaaggtgaag 313
             |||||||| ||||||||||| || |||||||||||||| ||||| | |||||||||||| 
Sbjct: 18369 acacctgctgccttgaggagaaggactgaggcaggaggggtcttcaagataaaggtgaaa 18428

                     
Query: 314   ctcttatc 321
             || |||||
Sbjct: 18429 cttttatc 18436
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>gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, complete sequence
          Length = 39479

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 256   acctgcagccttgaggagcagtactgaggcaggaggtgtcttgaggataaaggtgaagct 315
             |||||| || || ||||| || ||||| || ||||||||||||||||| |||||||||||
Sbjct: 33571 acctgcggctttaaggagtagcactgacgccggaggtgtcttgaggatgaaggtgaagct 33630

                   
Query: 316   cttatc 321
             ||||||
Sbjct: 33631 cttatc 33636
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>emb|X56615.1|SORPL11 S.oleracea mRNA for chloroplast ribosomal protein L11
          Length = 836

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                       
Query: 67  cttcttcaccaggatcggtgggtcgacatcgatgcccatgttagcggcagtgcccgctat 126
           |||||| || ||||| || || |||| |||||| |||||||| || ||||| || || ||
Sbjct: 656 cttcttgacgaggataggaggatcgatatcgattcccatgttggcagcagttcctgcaat 597

                                                       
Query: 127 gattctcatggcagactcaatggttttgcagttcaagtcaggca 170
            |||||||| || || ||||||||| |||| |||||||||||||
Sbjct: 596 aattctcattgctgattcaatggttgtgcaattcaagtcaggca 553
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>ref|NM_103032.2| Arabidopsis thaliana PRPL11 (PLASTID RIBOSOMAL PROTEIN L11);
           structural constituent of ribosome AT1G32990 (PRPL11)
           mRNA, complete cds
          Length = 853

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 101 cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
           ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 653 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 594

                            
Query: 161 aagtcaggcagcttctc 177
           | ||| || ||||||||
Sbjct: 593 aggtcgggtagcttctc 577



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 284 gcaggaggtgtcttgaggataaaggtgaagctcttatca 322
           ||||| || |||||||| ||||| |||||||||||||||
Sbjct: 470 gcaggcggggtcttgagaataaacgtgaagctcttatca 432
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>emb|X87296.1|ATRPL11GE A.thaliana rpl11 gene
          Length = 4764

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 101  cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
            ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 3842 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 3783

                             
Query: 161  aagtcaggcagcttctc 177
            | ||| || ||||||||
Sbjct: 3782 aggtcgggtagcttctc 3766



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 284  gcaggaggtgtcttgaggataaaggtgaagctcttatc 321
            ||||| || |||||||| ||||| ||||||||||||||
Sbjct: 3313 gcaggcggggtcttgagaataaacgtgaagctcttatc 3276
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>gb|AY063070.1| Arabidopsis thaliana putative ribosomal protein L11 (At1g32990)
           mRNA, complete cds
          Length = 700

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 101 cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
           ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 614 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 555

                            
Query: 161 aagtcaggcagcttctc 177
           | ||| || ||||||||
Sbjct: 554 aggtcgggtagcttctc 538



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 284 gcaggaggtgtcttgaggataaaggtgaagctcttatca 322
           ||||| || |||||||| ||||| |||||||||||||||
Sbjct: 431 gcaggcggggtcttgagaataaacgtgaagctcttatca 393
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>gb|AF370254.1| Arabidopsis thaliana putative ribosomal protein L11 (At1g32990)
           mRNA, complete cds
          Length = 827

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 101 cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
           ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 649 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 590

                            
Query: 161 aagtcaggcagcttctc 177
           | ||| || ||||||||
Sbjct: 589 aggtcgggtagcttctc 573



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 284 gcaggaggtgtcttgaggataaaggtgaagctcttatca 322
           ||||| || |||||||| ||||| |||||||||||||||
Sbjct: 466 gcaggcggggtcttgagaataaacgtgaagctcttatca 428
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>gb|AF412105.1|AF412105 Arabidopsis thaliana At1g32990/F9L11_15 mRNA, complete cds
          Length = 828

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 101 cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
           ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 650 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 591

                            
Query: 161 aagtcaggcagcttctc 177
           | ||| || ||||||||
Sbjct: 590 aggtcgggtagcttctc 574



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 284 gcaggaggtgtcttgaggataaaggtgaagctcttatca 322
           ||||| || |||||||| ||||| |||||||||||||||
Sbjct: 467 gcaggcggggtcttgagaataaacgtgaagctcttatca 429
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>gb|AF325023.2|AF325023 Arabidopsis thaliana At1g32990 (At1g32990/F9L11_15) mRNA, complete
           cds
          Length = 844

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 101 cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
           ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 649 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 590

                            
Query: 161 aagtcaggcagcttctc 177
           | ||| || ||||||||
Sbjct: 589 aggtcgggtagcttctc 573



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 284 gcaggaggtgtcttgaggataaaggtgaagctcttatca 322
           ||||| || |||||||| ||||| |||||||||||||||
Sbjct: 466 gcaggcggggtcttgagaataaacgtgaagctcttatca 428
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>emb|BX814569.1|CNS0AEJV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB81ZC10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1473

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 101  cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
            ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 1168 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 1109

                             
Query: 161  aagtcaggcagcttctc 177
            | ||| || ||||||||
Sbjct: 1108 aggtcgggtagcttctc 1092
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>gb|AY085664.1| Arabidopsis thaliana clone 16773 mRNA, complete sequence
          Length = 819

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 101 cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
           ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 653 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 594

                            
Query: 161 aagtcaggcagcttctc 177
           | ||| || ||||||||
Sbjct: 593 aggtcgggtagcttctc 577



 Score = 46.1 bits (23), Expect = 0.069
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 284 gcaggaggtgtcttgaggataaaggtgaagctcttatca 322
           ||||| || |||||||| ||||| |||||||||||||||
Sbjct: 470 gcaggcggggtcttgagaataaacgtgaagctcttatca 432
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>gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete
             sequence
          Length = 122836

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                         
Query: 101   cccatgttagcggcagtgcccgctatgattctcatggcagactcaatggttttgcagttc 160
             ||||||||||| ||||| || || ||||||||||| || || ||||||||  ||||||||
Sbjct: 76617 cccatgttagctgcagttcctgcaatgattctcatagcggattcaatggtcgtgcagttc 76558

                              
Query: 161   aagtcaggcagcttctc 177
             | ||| || ||||||||
Sbjct: 76557 aggtcgggtagcttctc 76541



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 284   gcaggaggtgtcttgaggataaaggtgaagctcttatc 321
             ||||| || |||||||| ||||| ||||||||||||||
Sbjct: 76093 gcaggcggggtcttgagaataaacgtgaagctcttatc 76056
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>ref|NM_124540.1| Arabidopsis thaliana structural constituent of ribosome AT5G51610
           mRNA, complete cds
          Length = 549

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 286 aggaggtgtcttgaggataaaggtgaagctct 317
           |||||| |||||||||||||| ||||||||||
Sbjct: 309 aggaggggtcttgaggataaaagtgaagctct 278
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>gb|AF184768.1|AF184768 Arabidopsis thaliana inhibitor tagged site ITS1 genomic sequence
          Length = 804

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 286 aggaggtgtcttgaggataaaggtgaagctct 317
           |||||| |||||||||||||| ||||||||||
Sbjct: 295 aggaggggtcttgaggataaaagtgaagctct 264
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>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15
          Length = 81293

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 286   aggaggtgtcttgaggataaaggtgaagctct 317
             |||||| |||||||||||||| ||||||||||
Sbjct: 64877 aggaggggtcttgaggataaaagtgaagctct 64846
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>emb|Z75542.1|CEF55D12 Caenorhabditis elegans Cosmid F55D12, complete sequence
          Length = 31131

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     gtgtcaaaaatgaagcaaaaa 25
             |||||||||||||||||||||
Sbjct: 10837 gtgtcaaaaatgaagcaaaaa 10857
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>emb|AL035652.8|HS1J6 Human DNA sequence from clone RP1-1J6 on chromosome 20 Contains the 5'
             end of the TOP1 gene for topoisomerase (DNA) I and the 3'
             end of a novel gene, complete sequence
          Length = 88827

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 152   ttgcagttcaagtcaggcagcttctcctg 180
             |||||||||||||||||||  ||||||||
Sbjct: 88605 ttgcagttcaagtcaggcactttctcctg 88577
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>ref|XM_790100.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC590497 (LOC590497), mRNA
          Length = 4857

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 53   aagaccaccttctccttcttc 73
            |||||||||||||||||||||
Sbjct: 4808 aagaccaccttctccttcttc 4788
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>emb|X73005.1|SPC6RPL1A Synechocystis PCC6803 genes for ribosomal protein L11 and L1
          Length = 1467

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 284 gcaggaggtgtcttgaggataaaggtgaa 312
           |||||||| || |||||||||||||||||
Sbjct: 415 gcaggaggagttttgaggataaaggtgaa 387
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 284    gcaggaggtgtcttgaggataaaggtgaa 312
              |||||||| || |||||||||||||||||
Sbjct: 925091 gcaggaggagttttgaggataaaggtgaa 925119
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>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 241     tgagcctttttcgacacctgcagc 264
               |||||||||||| |||||||||||
Sbjct: 1629749 tgagcctttttcaacacctgcagc 1629772
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>ref|XM_422754.1| PREDICTED: Gallus gallus similar to Multidrug resistance-associated
            protein 5 (Multi-specific organic anion tranporter-C)
            (MOAT-C) (pABC11) (SMRP) (LOC424947), mRNA
          Length = 4896

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   accaccttctccttcttcac 75
            ||||||||||||||||||||
Sbjct: 3050 accaccttctccttcttcac 3031
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 241    tgagcctttttcgacacctgcagc 264
              |||||||||||| |||||||||||
Sbjct: 379482 tgagcctttttcaacacctgcagc 379459
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>gb|AC114583.7| Mus musculus chromosome 1, clone RP23-195A24, complete sequence
          Length = 227529

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     aaaaatgaagcaaaaaatgt 29
              ||||||||||||||||||||
Sbjct: 106914 aaaaatgaagcaaaaaatgt 106933
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>gb|AC124547.4| Mus musculus BAC clone RP23-274I8 from chromosome 1, complete sequence
          Length = 225058

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ttgaggataaaggtgaagct 315
             ||||||||||||||||||||
Sbjct: 16089 ttgaggataaaggtgaagct 16108
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>emb|CR847496.7| Zebrafish DNA sequence from clone CH211-203D1 in linkage group 14,
             complete sequence
          Length = 157741

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 1     ttttgtgtcaaaaatgaagcaaaaaatg 28
             |||||||  |||||||||||||||||||
Sbjct: 93176 ttttgtgctaaaaatgaagcaaaaaatg 93203
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>ref|XM_545988.2| PREDICTED: Canis familiaris similar to B0416.5a (LOC488870), mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  ccttctccttcttcaccagg 79
           ||||||||||||||||||||
Sbjct: 526 ccttctccttcttcaccagg 507
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>gb|AC087354.13| Homo sapiens chromosome 8, clone RP11-398H6, complete sequence
          Length = 184610

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    ccaccttctccttcttcacc 76
             ||||||||||||||||||||
Sbjct: 84726 ccaccttctccttcttcacc 84707
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      cgatgcccatgttagcggca 115
               ||||||||||||||||||||
Sbjct: 4065362 cgatgcccatgttagcggca 4065343
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>gb|AC090093.7| Homo sapiens chromosome 8, clone RP11-656A10, complete sequence
          Length = 167115

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    ccaccttctccttcttcacc 76
             ||||||||||||||||||||
Sbjct: 19210 ccaccttctccttcttcacc 19191
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>gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome 14, complete sequence
          Length = 234665

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 8     tcaaaaatgaagcaaaaaatgtacagat 35
             |||||||||||| |||||||||| ||||
Sbjct: 69077 tcaaaaatgaagaaaaaaatgtaaagat 69050
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>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence
          Length = 233089

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    cctgcagccttgaggagcagtact 280
              |||||||||||| |||||||||||
Sbjct: 128309 cctgcagccttggggagcagtact 128332
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>gb|AC148019.5| Mus musculus BAC clone RP23-12B6 from chromosome 18, complete sequence
          Length = 211149

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     agctgactagaagaccacct 62
              ||||||||||||||||||||
Sbjct: 134725 agctgactagaagaccacct 134744
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>gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147103

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   agtcacctttccaaccttct 224
             ||||||||||||||||||||
Sbjct: 73991 agtcacctttccaaccttct 74010
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>gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc finger gene (REQ) gene,
            complete cds
          Length = 20369

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 257  cctgcagccttgaggagcagtact 280
            |||||||||||| |||||||||||
Sbjct: 6535 cctgcagccttggggagcagtact 6558
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>gb|AC010478.5|AC010478 Homo sapiens chromosome 5 clone CTD-2314G24, complete sequence
          Length = 126852

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     gtcaaaaatgaagcaaaaaatgta 30
             |||||||||||||||||| |||||
Sbjct: 80022 gtcaaaaatgaagcaaaatatgta 80045
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>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14,
             complete sequence
          Length = 179663

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aaaatgaagcaaaaaatgta 30
             ||||||||||||||||||||
Sbjct: 33565 aaaatgaagcaaaaaatgta 33584
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>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete
             sequence
          Length = 219246

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   cctgcagccttgaggagcagtact 280
             |||||||||||| |||||||||||
Sbjct: 81226 cctgcagccttggggagcagtact 81249
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>emb|CT573093.3| CH250-1K10, complete sequence
          Length = 185363

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 211    ctttccaaccttctcacgttgtggctcc 238
              |||||||||||||||| ||| |||||||
Sbjct: 121315 ctttccaaccttctcaggttttggctcc 121342
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>gb|U43920.1|HSU43920 Human ubi-d4 gene, partial cds
          Length = 291

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 257 cctgcagccttgaggagcagtact 280
           |||||||||||| |||||||||||
Sbjct: 71  cctgcagccttggggagcagtact 94
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>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 241     tgagcctttttcgacacctgcagc 264
               |||||||||||| |||||||||||
Sbjct: 1627438 tgagcctttttcaacacctgcagc 1627461


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,868,779
Number of Sequences: 3902068
Number of extensions: 3868779
Number of successful extensions: 79443
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79294
Number of HSP's gapped (non-prelim): 149
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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