>FPRP_HUMAN (Q9P2B2) Prostaglandin F2 receptor negative regulator precursor|
           (Prostaglandin F2-alpha receptor regulatory protein)
           (Prostaglandin F2-alpha receptor-associated protein)
           (CD9 partner 1) (CD9P-1) (CD315 antigen)
          Length = 879

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
 Frame = -2

Query: 321 EWFAELTGQMGQDQGK---MSSVALQPS------PKTVEGVDGRRLVLLCQLACQGGDEQ 169
           EW AE  G   + Q K   +++V +QPS      PK V   +G+ L L C +     D+ 
Sbjct: 251 EWIAE-QGNWQEIQEKAVEVATVVIQPSVLRAAVPKNVSVAEGKELDLTCNITTDRADDV 309

Query: 168 DPQMT 154
            P++T
Sbjct: 310 RPEVT 314

>PMPC_CHLTR (O84419) Probable outer membrane protein pmpC precursor|
           (Polymorphic membrane protein C)
          Length = 1770

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -3

Query: 251 HLQKQWKASMAADWFCSVSSHAKGETSKIHK*QLRNGSISFAR-KQTAAPCHQSCSG-GT 78
           HL    +AS   +    VSS + GET +  + +L NG I +AR K T +    S S    
Sbjct: 77  HLSSSSEASPTTE---GVSSSSSGETDEKTEEELDNGGIIYAREKLTISESQDSLSNQSI 133

Query: 77  TIHESFSMFLSGLVIED 27
            +H++   F  G VI D
Sbjct: 134 ELHDNSIFFGEGEVIFD 150

>SIX6_CHICK (O93307) Homeobox protein SIX6 (Sine oculis homeobox homolog 6)|
           (Optic homeobox 2) (Six9 protein)
          Length = 246

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 103 QGAAVCFLANEM--LPFLSCHLWILLVSPLACELTEQNQSA----AIDAFH 237
           Q A VC    E   +  L   LW L V+P ACE   +N+S     AI AFH
Sbjct: 13  QVAGVCETLEESGDIERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFH 63

>SIX6_MOUSE (Q9QZ28) Homeobox protein SIX6 (Sine oculis homeobox homolog 6)|
           (Optic homeobox 2) (Six9 protein)
          Length = 246

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 103 QGAAVCFLANEM--LPFLSCHLWILLVSPLACELTEQNQSA----AIDAFH 237
           Q A VC    E   +  L   LW L V+P ACE   +N+S     AI AFH
Sbjct: 13  QVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFH 63

>SIX6_HUMAN (O95475) Homeobox protein SIX6 (Sine oculis homeobox homolog 6)|
           (Optic homeobox 2) (Homeodomain protein OPTX2)
          Length = 246

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 103 QGAAVCFLANEM--LPFLSCHLWILLVSPLACELTEQNQSA----AIDAFH 237
           Q A VC    E   +  L   LW L V+P ACE   +N+S     AI AFH
Sbjct: 13  QVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFH 63

>YHG9_YEAST (P38758) Uncharacterized protein YHR009C|
          Length = 523

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 267 SVALQPSPKTVEGVDGRRLVLLCQLACQGGDEQDPQMTAEKWEHFICQEADS 112
           SV ++PS KTV         +L +L     +   P+M A K E ++C E D+
Sbjct: 361 SVTIKPSEKTVSPY-----AILAELKVNDREFFSPEMYARKDEVYVCGEGDT 407

>GLYA_PROMP (Q7V335) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 423

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = -3

Query: 296 KWGKTKAKCPASHSNHLQKQWKASMAADWFCSVSSHAKGETSKIHK*QLRNGSISFARKQ 117
           K G T      SH  HL      +M+  WF +V      ET+K++  ++R+  I+ A K 
Sbjct: 110 KPGDTILGMDLSHGGHLTHGSPVNMSGKWFNAVHYGVDKETNKLNFNEIRD--IALATKP 167

Query: 116 TAAPCHQSCSGGTTIHESF 60
               C  S        ESF
Sbjct: 168 KLIICGYSAYPRKIDFESF 186

>GSH0_RAT (P48508) Glutamate--cysteine ligase regulatory subunit (EC 6.3.2.2)|
           (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS
           light chain) (Glutamate--cysteine ligase modifier
           subunit)
          Length = 274

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
 Frame = -3

Query: 293 WGKTKAKCPASHSNHLQ-------KQWKASMAAD 213
           WG+ + KCP++HS  L+        +W + ++ D
Sbjct: 28  WGRLRKKCPSTHSEELRDCIQKTLNEWSSQISPD 61

>GSH0_MOUSE (O09172) Glutamate--cysteine ligase regulatory subunit (EC 6.3.2.2)|
           (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS
           light chain) (Glutamate--cysteine ligase modifier
           subunit)
          Length = 274

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
 Frame = -3

Query: 293 WGKTKAKCPASHSNHLQ-------KQWKASMAAD 213
           WG+ + KCP++HS  L+        +W + ++ D
Sbjct: 28  WGRLRKKCPSTHSEELRDCIQKTLNEWSSQISPD 61

>GLYA_PROM9 (Q31CS4) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 423

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 22/77 (28%), Positives = 31/77 (40%)
 Frame = -3

Query: 290 GKTKAKCPASHSNHLQKQWKASMAADWFCSVSSHAKGETSKIHK*QLRNGSISFARKQTA 111
           G T      SH  HL      +M+  WF +V      ETS+++  ++R   I+   K   
Sbjct: 112 GDTIMGMDLSHGGHLTHGSPVNMSGKWFNAVHYGVNKETSELNFDEIR--EIALETKPKL 169

Query: 110 APCHQSCSGGTTIHESF 60
             C  S    T   ESF
Sbjct: 170 IICGYSAYPRTIDFESF 186

>PQQCD_METEX (Q49150) Bifunctional coenzyme PQQ synthesis protein C/D|
           (Pyrroloquinoline quinone biosynthesis protein C/D)
           [Includes: Pyrroloquinoline-quinone synthase (EC
           1.3.3.11) (Coenzyme PQQ synthesis protein C); Coenzyme
           PQQ synthesis protein D]
          Length = 372

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 199 TEQNQSAAIDA--FHCFWRWLECDAGHFALVLP 291
           T + Q AAIDA  F C   W + DA +FA V P
Sbjct: 211 TPEMQRAAIDALTFKCNVLWTQLDALYFAYVAP 243

>RUBR1_CHLTE (P58992) Rubredoxin 1 (Rd 1)|
          Length = 69

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +2

Query: 86  QNSSDGKVLLSASWQMKCSHFSAVICGSCSSPPWHAS*QSKTNLRPSTPSTVFGDGWSAT 265
           + S   +  L ASW   C+      CG    P   A    +TN+RP  P           
Sbjct: 4   KESEPAQADLQASWM--CAE-----CGYIYDP---AEGNLETNIRPGMP----------- 42

Query: 266 LDILP--WSCPIC 298
            D LP  WSCP+C
Sbjct: 43  FDKLPDDWSCPVC 55

>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 116 SASWQMKCSHFSAVICGSCSSPPWHAS*QSKTNLRPSTPST 238
           +  W++K +  +     + S+PP     Q+ TN  P+TP+T
Sbjct: 182 TGEWEVKVNKETVFAPVTSSTPPGSPGGQADTNTTPATPTT 222

>CO8A_RABIT (P98136) Complement component C8 alpha chain precursor (Complement|
           component 8 alpha subunit)
          Length = 585

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 187 ACELTEQNQSAAIDAFHCFWRWLECDAG 270
           ACE TEQ  + A   + C+  W  C AG
Sbjct: 528 ACEQTEQQGAKADGHWSCWGSWSPCTAG 555

>CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14)|
          Length = 542

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 146 FSAVICGSCSSPPWHAS*QSKTNLRPSTPSTVFGDGWSATLDILPWSCPIC--PVSSAN 316
           +S V  G  + PP  +S  +KT  + +  ST      + T    P SCP+   P S+ N
Sbjct: 308 YSLVHSGGSTPPPPSSSSATKTTTKTTATSTKTTTTTAPTATSTPGSCPVANQPCSTQN 366

>RECN_STRCO (Q9S220) DNA repair protein recN (Recombination protein N)|
          Length = 572

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 273 MSSVALQPSPKTVEGVDGRRLVLLCQLACQGGDEQDPQMTA 151
           ++  AL  +P+  EGVDG  LV   Q A       DP + A
Sbjct: 228 VAHAALAGNPEDPEGVDGATLVAGAQRALDAVRSHDPALAA 268

>NTG1_YEAST (P31378) DNA base excision repair N-glycosylase 1, mitochondrial|
           precursor
          Length = 399

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 308 SLQDKWGKTKAKCPASHSNHLQKQWK 231
           +LQ  WGK +  C   H + L K WK
Sbjct: 248 TLQKAWGKIEGICVDVHVDRLTKLWK 273

>SCRB_KLEPN (P27217) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 465

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 249 SPKTVEGVDGRRLVLLCQLACQGGDEQDPQMTAEKWEH 136
           +P+T++  DGRRL L+  +    GDE      A+ W H
Sbjct: 280 APQTMQADDGRRL-LVGWMGVPDGDEMHQPTRAQGWIH 316

>NRP1_HUMAN (O14786) Neuropilin-1 precursor (Vascular endothelial cell growth|
           factor 165 receptor) (CD304 antigen)
          Length = 923

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 293 WGKTKAKCPASHSNHLQKQW 234
           WG  K  C   H NH+Q +W
Sbjct: 654 WGSHKTFCHWEHDNHVQLKW 673


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,340,623
Number of Sequences: 219361
Number of extensions: 1084084
Number of successful extensions: 3355
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3354
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)