>emb|AL513475.13| Human DNA sequence from clone RP11-277I20 on chromosome 6 Contains part
              of the UTRN gene for utrophin (homologous to dystrophin)
              (DRP, DRP1, DMDL), a novel pseudogene similar to
              hypothetical protein HT023 and a novel pseudogene, complete
              sequence
          Length = 191752

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 131    atgaaatgctcccatttctcag 152
              ||||||||||||||||||||||
Sbjct: 183818 atgaaatgctcccatttctcag 183839

>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15,
             complete sequence
          Length = 205794

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   catttctcagctgtcatttgt 163
             |||||||||||||||||||||
Sbjct: 92073 catttctcagctgtcatttgt 92093

>gb|AC139568.5| Mus musculus chromosome 12, clone RP23-208G5, complete sequence
          Length = 202882

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   gaaatgctcccatttctcag 152
             ||||||||||||||||||||
Sbjct: 11243 gaaatgctcccatttctcag 11224

>gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosome 6, complete sequence
          Length = 175917

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    gagctgacagagcaaaacca 212
              ||||||||||||||||||||
Sbjct: 166971 gagctgacagagcaaaacca 166952

>gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complete sequence
          Length = 113258

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   caaggtgctgctgtctgcttcctg 126
             ||||| ||||||||||||||||||
Sbjct: 80268 caaggagctgctgtctgcttcctg 80245

>gb|AC152061.6| Mus musculus BAC clone RP23-351K4 from chromosome 12, complete sequence
          Length = 206383

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    gaaatgctcccatttctcag 152
              ||||||||||||||||||||
Sbjct: 117653 gaaatgctcccatttctcag 117672

>emb|AL035406.25|HS233K16 Human DNA sequence from clone RP1-233K16 on chromosome 1p36.21-36.33
              Contains the 5' end of the NPHP4 gene for nephronophthisis
              4, the KCNAB2 gene for potassium voltage-gated channel,
              shaker-related subfamily, beta member 2, the 3' end of the
              CHD5 gene for chromodomain helicase DNA binding protein 5
              and a CpG island, complete sequence
          Length = 161651

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    tttctcagctgtcatttgtg 164
              ||||||||||||||||||||
Sbjct: 129428 tttctcagctgtcatttgtg 129409

>gb|AC009321.18| Homo sapiens 12 BAC RP11-392B15 (Roswell Park Cancer Institute
           Human BAC Library) complete sequence
          Length = 88746

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 ccatttctcagctgtcattt 161
           ||||||||||||||||||||
Sbjct: 464 ccatttctcagctgtcattt 483

>gb|AC130895.2| Homo sapiens 12 BAC RP11-115H15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 123162

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    ccatttctcagctgtcattt 161
              ||||||||||||||||||||
Sbjct: 121622 ccatttctcagctgtcattt 121641

>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
              cluster, cholinesterase, and COLP5alpha genes, complete
              sequence
          Length = 796348

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    aaatgctcccatttctcagc 153
              ||||||||||||||||||||
Sbjct: 593376 aaatgctcccatttctcagc 593395

>gb|AC006220.4| Arabidopsis thaliana chromosome 2 clone T20G20 map m246, complete
             sequence
          Length = 110352

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 229   gccttccactgtttttggagatgg 252
             |||| |||||||||||||||||||
Sbjct: 39798 gcctgccactgtttttggagatgg 39821

>gb|AC001228.1|HSAC001228 244Kb Contig from Human Chromosome 11p15.5 spanning D11S1 through D11S25,
              complete sequence
          Length = 244254

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 36     gaccaaaccagaaagaaacatgct 59
              |||||||| |||||||||||||||
Sbjct: 215664 gaccaaactagaaagaaacatgct 215687

>gb|AC105410.1| Homo sapiens chromosome 16 clone CTD-2348G11, complete sequence
          Length = 133838

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    gccttggtcttgccccattt 296
              ||||||||||||||||||||
Sbjct: 133784 gccttggtcttgccccattt 133765

>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome
          Length = 305107

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     atcctctatgaccaaaccag 46
              ||||||||||||||||||||
Sbjct: 100756 atcctctatgaccaaaccag 100775

>gb|AC006345.4|AC006345 Homo sapiens PAC clone RP4-791N16 from 14q24.3, complete sequence
          Length = 125508

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    tgtttttggagatggttgga 257
              ||||||||||||||||||||
Sbjct: 102697 tgtttttggagatggttgga 102716

>gb|AC153606.3| Mus musculus 6 BAC RP23-252F12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 203410

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    caaaccagaaagaaacatgctaaa 62
             ||||||||||| ||||||||||||
Sbjct: 95505 caaaccagaaaaaaacatgctaaa 95528

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 142      ccatttctcagctgtcatttgtgg 165
                ||||||||||||||||| ||||||
Sbjct: 22312451 ccatttctcagctgtcaattgtgg 22312474

>gb|AC008551.5| Homo sapiens chromosome 16 clone CTC-508F8, complete sequence
          Length = 160138

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   gccttggtcttgccccattt 296
             ||||||||||||||||||||
Sbjct: 23528 gccttggtcttgccccattt 23509

>gb|AC150904.3| Pan troglodytes BAC clone CH251-1149I8 from chromosome y, complete
             sequence
          Length = 204128

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   gccttggtcttgccccattt 296
             ||||||||||||||||||||
Sbjct: 77131 gccttggtcttgccccattt 77112

>gb|AF369029.2| White spot syndrome virus, complete genome
          Length = 292967

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     atcctctatgaccaaaccag 46
              ||||||||||||||||||||
Sbjct: 149700 atcctctatgaccaaaccag 149719

>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence
          Length = 202381

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    aaagaaacatgctaaaggat 66
             ||||||||||||||||||||
Sbjct: 42704 aaagaaacatgctaaaggat 42723

>gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, complete sequence
          Length = 176226

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    gaccaaaccagaaagaaacatgct 59
             |||||||| |||||||||||||||
Sbjct: 59974 gaccaaactagaaagaaacatgct 59951

>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence
          Length = 230020

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 103    caaggtgctgctgtctgcttcctg 126
              ||||| ||||||||||||||||||
Sbjct: 168503 caaggagctgctgtctgcttcctg 168480

>dbj|AK108771.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H06, full
            insert sequence
          Length = 1403

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 142  ccatttctcagctgtcatttgtgg 165
            ||||||||||||||||| ||||||
Sbjct: 1103 ccatttctcagctgtcaattgtgg 1080

>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome
          Length = 307287

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     atcctctatgaccaaaccag 46
              ||||||||||||||||||||
Sbjct: 134343 atcctctatgaccaaaccag 134362

>emb|AL442663.3|CNS07ECV Human chromosome 14 DNA sequence BAC R-109N23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165423

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    tgtttttggagatggttgga 257
              ||||||||||||||||||||
Sbjct: 140172 tgtttttggagatggttgga 140191

>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   ccatttctcagctgtcatttgtgg 165
             ||||||||||||||||| ||||||
Sbjct: 63355 ccatttctcagctgtcaattgtgg 63378

>gb|AY227782.3| Bos taurus T cell receptor alpha (TCRA) gene, J segments and C region
          Length = 141711

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   tgaaatgctcccatttctca 151
             ||||||||||||||||||||
Sbjct: 48094 tgaaatgctcccatttctca 48113


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,100,437
Number of Sequences: 3902068
Number of extensions: 3100437
Number of successful extensions: 62320
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62257
Number of HSP's gapped (non-prelim): 63
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)