| Clone Name | rbaet18a05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016920.1| Zea mays clone E04912701C01.c mRNA sequence Length = 380 Score = 54.0 bits (27), Expect = 2e-04 Identities = 47/51 (92%), Gaps = 2/51 (3%) Strand = Plus / Plus Query: 1 ggctgaagctcaaggatgactattgacataatgatg-aacattacaacaaa 50 |||| ||||||||||||||||||||||| ||| ||| |||||||||||||| Sbjct: 55 ggcttaagctcaaggatgactattgacaaaat-atgaaacattacaacaaa 104
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 50.1 bits (25), Expect = 0.003 Identities = 40/45 (88%) Strand = Plus / Minus Query: 6 aagctcaaggatgactattgacataatgatgaacattacaacaaa 50 |||||||||||||||||| |||| ||| ||| |||||||||||| Sbjct: 122506 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 122462
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.003 Identities = 40/45 (88%) Strand = Plus / Minus Query: 6 aagctcaaggatgactattgacataatgatgaacattacaacaaa 50 |||||||||||||||||| |||| ||| ||| |||||||||||| Sbjct: 18649391 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 18649347
>dbj|AK065313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O22, full insert sequence Length = 1455 Score = 50.1 bits (25), Expect = 0.003 Identities = 40/45 (88%) Strand = Plus / Minus Query: 6 aagctcaaggatgactattgacataatgatgaacattacaacaaa 50 |||||||||||||||||| |||| ||| ||| |||||||||||| Sbjct: 1450 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 1406
>gb|AF125222.1| Antheraea yamamai mariner transposon Ay1.1 transposase pseudogene, partial sequence Length = 450 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 agggcattgtttaagtgctga 146 ||||||||||||||||||||| Sbjct: 175 agggcattgtttaagtgctga 155
>gb|AF125219.1| Antheraea mylitta mariner transposon Anm1.1 transposase pseudogene, partial sequence Length = 450 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 agggcattgtttaagtgctga 146 ||||||||||||||||||||| Sbjct: 175 agggcattgtttaagtgctga 155
>gb|AC012653.8|AC012653 Homo sapiens chromosome 15 clone RP11-86K22 map 15q21.3, complete sequence Length = 190420 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 tgatgaacattacaacaaata 52 ||||||||||||||||||||| Sbjct: 162736 tgatgaacattacaacaaata 162756
>gb|DQ322171.1| Homo sapiens aldehyde dehydrogenase 1 family, member A2 (ALDH1A2) gene, complete cds Length = 116285 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 tgatgaacattacaacaaata 52 ||||||||||||||||||||| Sbjct: 78465 tgatgaacattacaacaaata 78445
>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence Length = 138404 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 attgacataatgatgaacat 41 |||||||||||||||||||| Sbjct: 44093 attgacataatgatgaacat 44112
>gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complete sequence Length = 55514 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 caaaaggacatctataagtg 77 |||||||||||||||||||| Sbjct: 297 caaaaggacatctataagtg 316
>gb|AC006994.4| Homo sapiens BAC clone RP11-396J8 from 2, complete sequence Length = 192104 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 caaaaggacatctataagtg 77 |||||||||||||||||||| Sbjct: 190400 caaaaggacatctataagtg 190419 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,569,478 Number of Sequences: 3902068 Number of extensions: 1569478 Number of successful extensions: 102866 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102820 Number of HSP's gapped (non-prelim): 45 length of query: 211 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 189 effective length of database: 17,147,199,772 effective search space: 3240820756908 effective search space used: 3240820756908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)