ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet18a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT016920.1| Zea mays clone E04912701C01.c mRNA sequence 54 2e-04
2gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.003
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
4dbj|AK065313.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
5gb|AF125222.1| Antheraea yamamai mariner transposon Ay1.1 transp... 42 0.68
6gb|AF125219.1| Antheraea mylitta mariner transposon Anm1.1 trans... 42 0.68
7gb|AC012653.8|AC012653 Homo sapiens chromosome 15 clone RP11-86K... 42 0.68
8gb|DQ322171.1| Homo sapiens aldehyde dehydrogenase 1 family, mem... 42 0.68
9gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete... 40 2.7
10gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complet... 40 2.7
11gb|AC006994.4| Homo sapiens BAC clone RP11-396J8 from 2, complet... 40 2.7

>gb|BT016920.1| Zea mays clone E04912701C01.c mRNA sequence
          Length = 380

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 47/51 (92%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                              
Query: 1   ggctgaagctcaaggatgactattgacataatgatg-aacattacaacaaa 50
           |||| ||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 55  ggcttaagctcaaggatgactattgacaaaat-atgaaacattacaacaaa 104



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>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05,
              complete sequence
          Length = 178013

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 6      aagctcaaggatgactattgacataatgatgaacattacaacaaa 50
              |||||||||||||||||| |||| |||  ||| ||||||||||||
Sbjct: 122506 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 122462



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 6        aagctcaaggatgactattgacataatgatgaacattacaacaaa 50
                |||||||||||||||||| |||| |||  ||| ||||||||||||
Sbjct: 18649391 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 18649347



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>dbj|AK065313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O22, full
            insert sequence
          Length = 1455

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 6    aagctcaaggatgactattgacataatgatgaacattacaacaaa 50
            |||||||||||||||||| |||| |||  ||| ||||||||||||
Sbjct: 1450 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 1406



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>gb|AF125222.1| Antheraea yamamai mariner transposon Ay1.1 transposase pseudogene,
           partial sequence
          Length = 450

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 126 agggcattgtttaagtgctga 146
           |||||||||||||||||||||
Sbjct: 175 agggcattgtttaagtgctga 155



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>gb|AF125219.1| Antheraea mylitta mariner transposon Anm1.1 transposase pseudogene,
           partial sequence
          Length = 450

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 126 agggcattgtttaagtgctga 146
           |||||||||||||||||||||
Sbjct: 175 agggcattgtttaagtgctga 155



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>gb|AC012653.8|AC012653 Homo sapiens chromosome 15 clone RP11-86K22 map 15q21.3, complete
              sequence
          Length = 190420

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 32     tgatgaacattacaacaaata 52
              |||||||||||||||||||||
Sbjct: 162736 tgatgaacattacaacaaata 162756



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>gb|DQ322171.1| Homo sapiens aldehyde dehydrogenase 1 family, member A2 (ALDH1A2) gene,
             complete cds
          Length = 116285

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    tgatgaacattacaacaaata 52
             |||||||||||||||||||||
Sbjct: 78465 tgatgaacattacaacaaata 78445



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>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence
          Length = 138404

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    attgacataatgatgaacat 41
             ||||||||||||||||||||
Sbjct: 44093 attgacataatgatgaacat 44112



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>gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complete sequence
          Length = 55514

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  caaaaggacatctataagtg 77
           ||||||||||||||||||||
Sbjct: 297 caaaaggacatctataagtg 316



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>gb|AC006994.4| Homo sapiens BAC clone RP11-396J8 from 2, complete sequence
          Length = 192104

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     caaaaggacatctataagtg 77
              ||||||||||||||||||||
Sbjct: 190400 caaaaggacatctataagtg 190419


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,569,478
Number of Sequences: 3902068
Number of extensions: 1569478
Number of successful extensions: 102866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102820
Number of HSP's gapped (non-prelim): 45
length of query: 211
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 189
effective length of database: 17,147,199,772
effective search space: 3240820756908
effective search space used: 3240820756908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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