Clone Information

BLAST Search Result

Clone Name	rbaet18a01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dep...	35	0.11
2	RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12	32	0.91
3	HXA4_CHICK (P17277) Homeobox protein Hox-A4 (Chox-1.4)	31	1.6
4	MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1	30	2.7
5	TKB1_STRPU (Q26648) Tektin-B1	30	3.5
6	RHG12_MACFA (Q9BE31) Rho-GTPase-activating protein 12	30	3.5
7	DA_DROME (P11420) Protein daughterless	30	3.5
8	PTHR1_RAT (P25961) Parathyroid hormone/parathyroid hormone-relat...	30	3.5
9	SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dep...	30	3.5
10	RHG12_HUMAN (Q8IWW6) Rho-GTPase-activating protein 12	30	3.5
11	RFFL_RAT (Q8CIN9) Rififylin (RING finger and FYVE-like domain-co...	30	3.5
12	PTHR1_HUMAN (Q03431) Parathyroid hormone/parathyroid hormone-rel...	30	3.5
13	EBP2_XENLA (Q9I8J6) Probable rRNA-processing protein EBP2 (Nucle...	30	3.5
14	TNR7_MOUSE (P41272) Tumor necrosis factor receptor superfamily m...	29	4.5
15	YOT5_CAEEL (P34651) Hypothetical protein ZK632.5	29	4.5
16	E75_CHOFU (O01639) Ecdysone-inducible protein E75	29	4.5
17	PRTP_TUHV2 (Q9WRL6) Probable processing and transport protein	29	4.5
18	B4GT3_PONPY (Q5NVN3) Beta-1,4-galactosyltransferase 3 (EC 2.4.1....	29	5.9
19	B4GT3_HUMAN (O60512) Beta-1,4-galactosyltransferase 3 (EC 2.4.1....	29	5.9
20	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	28	7.7
21	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	28	7.7
22	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	28	7.7
23	ZIC3_MOUSE (Q62521) Zinc finger protein ZIC 3 (Zinc finger prote...	28	7.7
24	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	28	7.7
25	PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)	28	7.7
26	LRC50_RAT (Q6AYH9) Leucine-rich repeat-containing protein 50	28	7.7
27	SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos...	28	7.7
28	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	28	7.7
29	ZIC3_HUMAN (O60481) Zinc finger protein ZIC 3 (Zinc finger prote...	28	7.7

>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 1 (SWI/SNF complex 155
            kDa subunit) (BRG1-associated factor 155) (SWI3-related
            protein)
          Length = 1104

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -3

Query: 371  DMESERLRIQRRRVDGQRMLMALQQKEFDLDIAEAYNYSSSVDHLPGAQTPPPAGLHQQ- 195
            D E E L  QR+++  +R    ++Q ++    AE              QTP  A  H   
Sbjct: 921  DREKEALEQQRQQLLTERQNFHMEQLKY----AELRARQQMEQQQQHGQTPQQAHQHTGG 976

Query: 194  PGSSP-STTGHPN*AGHRQPCRTPCIH 117
            PG +P   TGHP    H+QP   P +H
Sbjct: 977  PGMAPLGATGHPGMMPHQQPPPYPLMH 1003

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>RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12|
          Length = 838

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 428 YALQKQRHKWE--QFKASKEWDMESERLRIQRRRVDGQRMLMALQQKEFDLDIAEAYNYS 255
           Y+    R +WE  ++ AS +   E  + R   RR+    +L   +     LD  +  + +
Sbjct: 374 YSADGSRSEWELPKYNASSQQQREIIKSRSLDRRLQEPIVLTKWRHSTIVLDSNDKDSPT 433

Query: 254 SSVDHLPGAQTPPPAGLHQQPG 189
           ++   LP  ++PP +  HQ PG
Sbjct: 434 TTKLCLPENESPPTSSKHQDPG 455

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>HXA4_CHICK (P17277) Homeobox protein Hox-A4 (Chox-1.4)|
          Length = 309

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 266 YNYSSSVDHLPGAQTPPPAGLHQQPGSSPSTTGHPN*AGHRQP 138
           Y+YSS+    PG + PPP      P   P   GHP   G  QP
Sbjct: 109 YSYSSAGSAAPGPEQPPPGA---SPPPPPPAKGHP---GPAQP 145

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>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1|
          Length = 1279

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 227 QTPPPAGLHQQPGSSPSTTGHPN*AGHRQPCRTPCIHT 114
           +T  P   H+  GS PS  G P   GH+ P  T   HT
Sbjct: 714 ETSEPIDTHEAHGSQPSLPGEP--PGHQHPVPTSLDHT 749

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>TKB1_STRPU (Q26648) Tektin-B1|
          Length = 400

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -3

Query: 431 EYALQKQRHKWEQFKASKEWDMESERLRIQRRRVDGQRMLMALQQKEFDLDIA 273
           E+AL+K+ H+ ++ K   EW  ++    I ++  + + +  A++ KE  L +A
Sbjct: 235 EFALRKRIHEMKRAKDEDEWQKKNTEEEIAKQERNIRELEQAIKDKENPLKLA 287

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>RHG12_MACFA (Q9BE31) Rho-GTPase-activating protein 12|
          Length = 847

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -3

Query: 428 YALQKQRHKWE--QFKASKEWDMESERLRIQRRRVDGQRMLMALQQKEFDLDIAEAYNYS 255
           Y+    R +WE  ++ AS +   E  + R   RR+    +L   +     LD  +  + +
Sbjct: 377 YSADGSRSEWELPKYNASSQQQREIIKSRSLDRRLQEPIVLTKWRHSTIVLDTNDKESPT 436

Query: 254 SSVDHLPGAQTPPPAGLHQQPGSSP 180
           +S    P  ++ P +  HQ   SSP
Sbjct: 437 ASKPCFPENESSPSSPKHQDTASSP 461

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>DA_DROME (P11420) Protein daughterless|
          Length = 710

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 166 CPVVEGLEPGCWWRPAGGGVCAPG 237
           CPV  GL P   +RP  GG+  PG
Sbjct: 152 CPVTTGLPPISSFRPTSGGIGGPG 175

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>PTHR1_RAT (P25961) Parathyroid hormone/parathyroid hormone-related peptide|
           receptor precursor (PTH/PTHr receptor) (PTH/PTHrP type I
           receptor)
          Length = 591

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = -3

Query: 335 RVDGQRMLMALQQKEFDLDIAEAYNYSSSVDHLPGAQTPPPAGLH--QQPGSSPSTT-GH 165
           R    R  +AL  K      + +Y+Y   V H       P AGL     P   P+TT GH
Sbjct: 471 RKSWSRWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRAGLSLPLSPRLPPATTNGH 530

Query: 164 PN*AGHRQP 138
               GH +P
Sbjct: 531 SQLPGHAKP 539

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>SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 1 (SWI/SNF complex 155
            kDa subunit) (BRG1-associated factor 155)
          Length = 1105

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -3

Query: 371  DMESERLRIQRRRVDGQRMLMALQQKEFDLDIAEAYNYSSSVDHLPGAQTPPPAGLHQQ- 195
            D E E L  QR+++  +R    ++Q ++             ++     Q P  A  H   
Sbjct: 922  DREKEALEQQRQQLLTERQNFHMEQLKY-----AELRARQQMEQQQHGQNPQQAHQHSGG 976

Query: 194  PGSSP-STTGHPN*AGHRQPCRTPCIH 117
            PG +P    GHP    H+QP   P +H
Sbjct: 977  PGLAPLGAAGHPGMMPHQQPPPYPLMH 1003

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>RHG12_HUMAN (Q8IWW6) Rho-GTPase-activating protein 12|
          Length = 846

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -3

Query: 428 YALQKQRHKWE--QFKASKEWDMESERLRIQRRRVDGQRMLMALQQKEFDLDIAEAYNYS 255
           Y+    R +WE  ++ AS +   E  + R   RR+    +L   +     LD  +  + +
Sbjct: 377 YSADGSRSEWELPKYNASSQQQREIIKSRSLDRRLQEPIVLTKWRHSTIVLDTNDKESPT 436

Query: 254 SSVDHLPGAQTPPPAGLHQQPGSSP 180
           +S    P  ++ P +  HQ   SSP
Sbjct: 437 ASKPCFPENESSPSSPKHQDTASSP 461

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>RFFL_RAT (Q8CIN9) Rififylin (RING finger and FYVE-like domain-containing|
           protein 1) (FYVE-RING finger protein Sakura)
          Length = 362

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 227 QTPPPAGLHQQPGSSPSTTGHPN*AGHRQPCRTPCIH 117
           +TPPP G   Q  S+P  +  P+  G    C+   +H
Sbjct: 17  ETPPPQGARTQAYSNPGYSSFPSPTGSEPSCKACGVH 53

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>PTHR1_HUMAN (Q03431) Parathyroid hormone/parathyroid hormone-related peptide|
           receptor precursor (PTH/PTHr receptor) (PTH/PTHrP type I
           receptor)
          Length = 593

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = -3

Query: 320 RMLMALQQKEFDLDIAEAYNYSSSVDHLPGAQTPPPAGLHQ--QPGSSPSTT--GHPN*A 153
           R  +AL  K      + +Y+Y   V H       P  GL     P   P+ T  GHP   
Sbjct: 476 RWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRVGLGLPLSPRLLPTATTNGHPQLP 535

Query: 152 GHRQPCRTPCIHT 114
           GH +P  TP + T
Sbjct: 536 GHAKP-GTPALET 547

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>EBP2_XENLA (Q9I8J6) Probable rRNA-processing protein EBP2 (Nucleolar protein|
           p40-like protein)
          Length = 312

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = -3

Query: 422 LQKQRHKWEQFKASKEWDMESERLRIQRRRVDGQRM---LMALQQKEFDLDIAEAYNY-- 258
           +QK RHK +  +AS E   ++++LR  R+   G+++   ++  +QKE    + +   Y  
Sbjct: 148 MQKIRHKLQLKQASMEKSEKAKQLRALRKY--GKKVQVEVLQKRQKEKSAMVTQIKKYQK 205

Query: 257 --SSSVDHLPGAQTP 219
             S  +D L G QTP
Sbjct: 206 GLSDKLDFLEGDQTP 220

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>TNR7_MOUSE (P41272) Tumor necrosis factor receptor superfamily member 7|
           precursor (CD27L receptor) (T-cell activation antigen
           CD27)
          Length = 250

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 242 HLPGAQTPPPAGLHQQPGSSPSTTGHPN*AGHRQPCRTPCIH---TYISLFL 96
           HLP     P   LH+Q    P++T +   + HR  C + CI    T+ S+FL
Sbjct: 144 HLPHGTEKPSWPLHRQ---LPNSTVYSQRSSHRPLCSSDCIRIFVTFSSMFL 192

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>YOT5_CAEEL (P34651) Hypothetical protein ZK632.5|
          Length = 824

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 362 SERLRIQRRRVDGQRMLMALQQKEFDLDIAEAYNYSSSVDHLP 234
           S RL +Q+  +D Q++     +  FD   + +YN+ S V++LP
Sbjct: 279 SIRLMMQKYLIDEQQIFFEYFEYIFDESASTSYNFQSIVENLP 321

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>E75_CHOFU (O01639) Ecdysone-inducible protein E75|
          Length = 690

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -3

Query: 236 PGAQTPPPAGLHQQPGSSPSTTGHPN*AGHRQPCRTPCIHTYISLFLSLRQ 84
           P   TP P  +H  PG SP+   HP  A   +P R P   T+  L  SL +
Sbjct: 571 PMRPTPSPQPMHPHPG-SPAHPAHP--AHSPRPLRAPLSSTHSVLAKSLME 618

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>PRTP_TUHV2 (Q9WRL6) Probable processing and transport protein|
          Length = 782

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/73 (32%), Positives = 30/73 (41%)
 Frame = -3

Query: 389 KASKEWDMESERLRIQRRRVDGQRMLMALQQKEFDLDIAEAYNYSSSVDHLPGAQTPPPA 210
           +A +  D E ERL +    VDG   L A        D+     Y     HL GA  PPP 
Sbjct: 678 RADEPVDEERERL-VVTYNVDGPLFLYAGGGVWKSKDL-----YLLLYQHLNGAAAPPPP 731

Query: 209 GLHQQPGSSPSTT 171
                P + P+TT
Sbjct: 732 AAPSPPPAEPATT 744

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>B4GT3_PONPY (Q5NVN3) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes: N
          Length = 393

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = -3

Query: 326 GQRMLMALQQKEFDLDIAEAYNYS------SSVDHLPGAQTPPPA--GLHQQPGSSPSTT 171
           G R L AL    F  D    ++YS      S++ HLPGA   PPA  GL   P  SP   
Sbjct: 30  GFRSLSAL----FGRDQGPTFDYSHPRDVYSNLSHLPGAPGGPPAPQGLPYCPERSPLLV 85

Query: 170 G 168
           G
Sbjct: 86  G 86

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>B4GT3_HUMAN (O60512) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes: N
          Length = 393

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = -3

Query: 326 GQRMLMALQQKEFDLDIAEAYNYS------SSVDHLPGAQTPPPA--GLHQQPGSSPSTT 171
           G R L AL    F  D    ++YS      S++ HLPGA   PPA  GL   P  SP   
Sbjct: 30  GFRSLSAL----FGRDQGPTFDYSHPRDVYSNLSHLPGAPGGPPAPQGLPYCPERSPLLV 85

Query: 170 G 168
           G
Sbjct: 86  G 86

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 236 PGAQTPPPAGLHQQPGSSPSTTGHP 162
           P  Q PPP G   QPG  P   G P
Sbjct: 456 PAQQRPPPQGGPPQPGPGPQRQGPP 480

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 236 PGAQTPPPAGLHQQPGSSPSTTGHP 162
           P  Q PPP G   QPG  P   G P
Sbjct: 456 PAQQRPPPQGGPPQPGPGPQRQGPP 480

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 236 PGAQTPPPAGLHQQPGSSPSTTGHP 162
           P  Q PPP G   QPG  P   G P
Sbjct: 456 PAQQRPPPQGGPPQPGPGPQRQGPP 480

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>ZIC3_MOUSE (Q62521) Zinc finger protein ZIC 3 (Zinc finger protein of the|
           cerebellum 3)
          Length = 466

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = -3

Query: 257 SSSVDHLPGAQTPPPA-----GLHQQPGSSPSTTGH 165
           S+S  H P     PP+     GLH+Q    PS TGH
Sbjct: 142 SASSLHAPAGIPEPPSYLLFPGLHEQGAGHPSPTGH 177

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 236 PGAQTPPPAGLHQQPGSSPSTTGHP 162
           P  Q PPP G   QPG  P   G P
Sbjct: 454 PAQQRPPPQGGPPQPGPGPQRQGPP 478

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>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 236 PGAQTPPPAGLHQQPGSSPSTTGHP 162
           P    PPPAG H +P   P  TG P
Sbjct: 153 PPQGPPPPAGPHLRPTQGPPPTGGP 177

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>LRC50_RAT (Q6AYH9) Leucine-rich repeat-containing protein 50|
          Length = 633

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 428 YALQKQ-RHKWEQFKASKEWDMESERLRIQRRRVDGQRMLMALQQKEFDLDIAEAYNYSS 252
           YA +K+ RH+WE  +  K  D   E L + +RR + ++   A  + E  L  +E      
Sbjct: 293 YAAEKEERHQWESREHKKITD-SLEALAMIKRRAEERK--KARDRGETPLPESE-----K 344

Query: 251 SVDHLPGAQTPPPAGLHQQ 195
           S+   P AQ  PP G  QQ
Sbjct: 345 SIPTSPEAQEKPPKGETQQ 363

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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = -3

Query: 287  DLDIAEAYNYSSSVDHLPGAQTPPPAGLHQQPGSSPSTTGHPN*AGHRQPCRTPCIHTYI 108
            D ++A  ++    VD    A+       H QP SS      P+ +    PC++P +  Y 
Sbjct: 1002 DAEVAADFDMEGDVDDY-SAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTVPEYS 1060

Query: 107  SLFLSLR 87
            +  L +R
Sbjct: 1061 APSLPIR 1067

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 236 PGAQTPPPAGLHQQPGSSPSTTGHP 162
           P  Q PPP G   QPG  P   G P
Sbjct: 184 PAQQRPPPQGGPPQPGPGPQRQGPP 208

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>ZIC3_HUMAN (O60481) Zinc finger protein ZIC 3 (Zinc finger protein of the|
           cerebellum 3)
          Length = 467

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = -3

Query: 257 SSSVDHLPGAQTPPPA-----GLHQQPGSSPSTTGH 165
           S+S  H P     PP+     GLH+Q    PS TGH
Sbjct: 143 SASSLHAPAGIPEPPSYLLFPGLHEQGAGHPSPTGH 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,411,722
Number of Sequences: 219361
Number of extensions: 939238
Number of successful extensions: 3689
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3681
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result