ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet17h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide ... 113 8e-23
2gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, com... 44 0.058
3dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.058
4dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.058
5gb|AY733961.1| Macaca mulatta isolate rq2277-10p14 MLV-derived v... 42 0.23
6gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, comple... 42 0.23
7emb|AL845490.8| Mouse DNA sequence from clone RP23-259M16 on chr... 42 0.23
8gb|BC079655.1| Mus musculus cDNA clone IMAGE:6854812 40 0.91
9ref|XM_617927.2| PREDICTED: Bos taurus similar to F-box only pro... 40 0.91
10gb|AC125152.5| Mus musculus BAC clone RP24-366J2 from chromosome... 40 0.91
11emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22,... 40 0.91
12gb|AY789611.1| Chrysopogon fulvus voucher PI199241 USDA FL gene,... 40 0.91
13emb|AL669956.10| Mouse DNA sequence from clone RP23-222I1 on chr... 40 0.91
14gb|AC099637.7| Mus musculus chromosome 1, clone RP24-257C20, com... 38 3.6
15gb|AF405701.1| Synthetic construct legume box RY repeat motif se... 38 3.6
16gb|AC161598.4| Mus musculus BAC clone RP23-360G8 from chromosome... 38 3.6
17gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome... 38 3.6
18gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome... 38 3.6
19gb|AC106169.5| Rattus norvegicus x BAC CH230-105D14 (Children's ... 38 3.6
20gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome... 38 3.6
21gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 38 3.6
22gb|AC132107.3| Mus musculus BAC clone RP24-251C17 from chromosom... 38 3.6
23gb|AC115714.14| Mus musculus chromosome 12, clone RP23-477C24, c... 38 3.6
24gb|AC125192.3| Mus musculus BAC clone RP23-266B4 from chromosome... 38 3.6
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 3.6
26gb|AC164121.3| Mus musculus BAC clone RP24-406J12 from chromosom... 38 3.6
27gb|AC131901.3| Homo sapiens chromosome 8, clone RP11-115H22, com... 38 3.6
28gb|AC127675.4| Mus musculus BAC clone RP24-553O5 from chromosome... 38 3.6
29gb|AC122195.4| Mus musculus BAC clone RP23-49D1 from 8, complete... 38 3.6
30emb|AL807757.9| Human DNA sequence from clone RP11-49O14 on chro... 38 3.6
31emb|AL596451.4| Human DNA sequence from clone RP11-75C9 on chrom... 38 3.6
32emb|AL356073.15| Human DNA sequence from clone RP11-813O3 on chr... 38 3.6
33emb|AL732462.20| Mouse DNA sequence from clone RP23-132J5 on chr... 38 3.6
34gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, compl... 38 3.6
35dbj|AK128451.1| Homo sapiens cDNA FLJ46594 fis, clone THYMU3045692 38 3.6
36gb|AC005010.2| Homo sapiens BAC clone GS1-110L19 from 8, complet... 38 3.6
37gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cance... 38 3.6
38emb|BX571770.5| Zebrafish DNA sequence from clone DKEY-276I5 in ... 38 3.6
39gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chrom... 38 3.6
40gb|AC158339.1| Homo sapiens chromosome 8 clone WI2-3382N4, compl... 38 3.6
41tpg|BK004861.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 38 3.6
42dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
43dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
47gb|AC149590.5| Mus musculus BAC clone RP23-348L9 from chromosome... 38 3.6
48gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genom... 38 3.6
49gb|AC006360.2|AC006360 Homo sapiens PAC clone RP5-1140N14 from 1... 38 3.6
50gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 38 3.6
51gb|AC091182.5| Homo sapiens chromosome 8, clone RP11-527N22, com... 38 3.6
52dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
53dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
54dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
55dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.6
56gb|AC109256.11| Mus musculus chromosome 8, clone RP23-11D11, com... 38 3.6
57emb|BX005210.10| Zebrafish DNA sequence from clone DKEY-222F8 in... 38 3.6
58gb|AC107631.20| Mus musculus chromosome 5, clone RP23-5M20, comp... 38 3.6
59gb|AC155848.6| Mus musculus 6 BAC RP24-534P19 (Roswell Park Canc... 38 3.6
60gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 3.6
61gb|AC149279.3| Mus musculus BAC clone RP24-89F23 from 7, complet... 38 3.6
62emb|AL611934.18| Mouse DNA sequence from clone RP23-472A8 on chr... 38 3.6
63emb|AL928963.8| Mouse DNA sequence from clone RP23-5K9 on chromo... 38 3.6
64gb|AC114494.2| Homo sapiens chromosome 1 clone RP11-439L8, compl... 38 3.6 
>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR)
          Length = 1490

 Score =  113 bits (57), Expect = 8e-23
 Identities = 63/65 (96%)
 Strand = Plus / Minus

                                                                        
Query: 21   cgacaagttgagcatcggccggcgtcctaaatgcatgcatgcatccatgggatttgcggg 80
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 1323 cgacaagttgagcatcggccggcgtcctagatgcatgcatgcatccatgggatttgcggt 1264

                 
Query: 81   ggatc 85
            |||||
Sbjct: 1263 ggatc 1259
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>gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, complete sequence
          Length = 174055

 Score = 44.1 bits (22), Expect = 0.058
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 51     atgcatgcatgcatccatggga 72
              ||||||||||||||||||||||
Sbjct: 139457 atgcatgcatgcatccatggga 139436
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>dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1100B9
          Length = 151959

 Score = 44.1 bits (22), Expect = 0.058
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 51    atgcatgcatgcatccatggga 72
             ||||||||||||||||||||||
Sbjct: 53965 atgcatgcatgcatccatggga 53944
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>dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1016F12, complete
              sequence
          Length = 200738

 Score = 44.1 bits (22), Expect = 0.058
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 51     atgcatgcatgcatccatggga 72
              ||||||||||||||||||||||
Sbjct: 128594 atgcatgcatgcatccatggga 128573
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>gb|AY733961.1| Macaca mulatta isolate rq2277-10p14 MLV-derived vector proviral
           integration site
          Length = 362

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 48  taaatgcatgcatgcatccat 68
           |||||||||||||||||||||
Sbjct: 266 taaatgcatgcatgcatccat 246
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>gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, complete sequence
          Length = 163930

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 45     tcctaaatgcatgcatgcatccatg 69
              ||||||| |||||||||||||||||
Sbjct: 142851 tcctaaaagcatgcatgcatccatg 142827
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>emb|AL845490.8| Mouse DNA sequence from clone RP23-259M16 on chromosome 2, complete
              sequence
          Length = 200794

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 45     tcctaaatgcatgcatgcatccatg 69
              |||||||||||||||||||| ||||
Sbjct: 118465 tcctaaatgcatgcatgcatgcatg 118489
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>gb|BC079655.1| Mus musculus cDNA clone IMAGE:6854812
          Length = 4411

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   atgcatgcatgcatccatgg 70
            ||||||||||||||||||||
Sbjct: 1039 atgcatgcatgcatccatgg 1058
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>ref|XM_617927.2| PREDICTED: Bos taurus similar to F-box only protein 28, transcript
            variant 1 (LOC537745), mRNA
          Length = 2928

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   aatgcatgcatgcatccatg 69
            ||||||||||||||||||||
Sbjct: 1809 aatgcatgcatgcatccatg 1790
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>gb|AC125152.5| Mus musculus BAC clone RP24-366J2 from chromosome 14, complete sequence
          Length = 134122

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    aaatgcatgcatgcatccat 68
             ||||||||||||||||||||
Sbjct: 82801 aaatgcatgcatgcatccat 82782
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>emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22, complete sequence
          Length = 129504

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aatgcatgcatgcatccatg 69
             ||||||||||||||||||||
Sbjct: 61533 aatgcatgcatgcatccatg 61552
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>gb|AY789611.1| Chrysopogon fulvus voucher PI199241 USDA FL gene, partial cds
          Length = 947

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 46  cctaaatgcatgcatgcatccatg 69
           ||||||||||||||||||| ||||
Sbjct: 476 cctaaatgcatgcatgcatgcatg 499
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>emb|AL669956.10| Mouse DNA sequence from clone RP23-222I1 on chromosome X, complete
             sequence
          Length = 199434

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    atgcatgcatgcatccatgg 70
             ||||||||||||||||||||
Sbjct: 19812 atgcatgcatgcatccatgg 19793
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>gb|AC099637.7| Mus musculus chromosome 1, clone RP24-257C20, complete sequence
          Length = 169573

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    aatgcatgcatgcatccat 68
             |||||||||||||||||||
Sbjct: 39300 aatgcatgcatgcatccat 39282
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>gb|AF405701.1| Synthetic construct legume box RY repeat motif sequence
          Length = 82

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 51 atgcatgcatgcatccatgggat 73
          |||||||||||||| ||||||||
Sbjct: 52 atgcatgcatgcatgcatgggat 74
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>gb|AC161598.4| Mus musculus BAC clone RP23-360G8 from chromosome 7, complete sequence
          Length = 216748

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 20419 atgcatgcatgcatccatg 20401
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>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10,
             complete sequence
          Length = 140282

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 60226 atgcatgcatgcatccatg 60244
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>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11,
              complete sequence
          Length = 145796

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 48     taaatgcatgcatgcatccatgg 70
              ||||||||||||||||| |||||
Sbjct: 101085 taaatgcatgcatgcatgcatgg 101063
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>gb|AC106169.5| Rattus norvegicus x BAC CH230-105D14 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227592

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 58568 atgcatgcatgcatccatg 58586
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>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0094M06, complete sequence
          Length = 135583

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 94010 atgcatgcatgcatccatg 93992
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>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 82432 atgcatgcatgcatccatg 82450
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>gb|AC132107.3| Mus musculus BAC clone RP24-251C17 from chromosome 8, complete sequence
          Length = 141785

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 57606 atgcatgcatgcatccatg 57588
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>gb|AC115714.14| Mus musculus chromosome 12, clone RP23-477C24, complete sequence
          Length = 164272

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 111563 atgcatgcatgcatccatg 111545
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>gb|AC125192.3| Mus musculus BAC clone RP23-266B4 from chromosome 8, complete sequence
          Length = 199459

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    aatgcatgcatgcatccat 68
             |||||||||||||||||||
Sbjct: 35731 aatgcatgcatgcatccat 35713
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 43       cgtcctaaatgcatgcatgcatccatg 69
                ||||||| |||||||||||||| ||||
Sbjct: 34973770 cgtcctacatgcatgcatgcatacatg 34973796



 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 52       tgcatgcatgcatccatgg 70
                |||||||||||||||||||
Sbjct: 29534047 tgcatgcatgcatccatgg 29534065
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>gb|AC164121.3| Mus musculus BAC clone RP24-406J12 from chromosome 12, complete
           sequence
          Length = 169925

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  atgcatgcatgcatccatg 69
           |||||||||||||||||||
Sbjct: 924 atgcatgcatgcatccatg 906
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>gb|AC131901.3| Homo sapiens chromosome 8, clone RP11-115H22, complete sequence
          Length = 33912

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    ctaaatgcatgcatgcatc 65
             |||||||||||||||||||
Sbjct: 29235 ctaaatgcatgcatgcatc 29253
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>gb|AC127675.4| Mus musculus BAC clone RP24-553O5 from chromosome 7, complete sequence
          Length = 155097

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 38144 atgcatgcatgcatccatg 38126
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>gb|AC122195.4| Mus musculus BAC clone RP23-49D1 from 8, complete sequence
          Length = 204335

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 173494 atgcatgcatgcatccatg 173512
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>emb|AL807757.9| Human DNA sequence from clone RP11-49O14 on chromosome 9 Contains two
             novel genes, complete sequence
          Length = 93279

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 47    ctaaatgcatgcatgcatccatg 69
             |||||||||||||||||| ||||
Sbjct: 22867 ctaaatgcatgcatgcatgcatg 22889
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>emb|AL596451.4| Human DNA sequence from clone RP11-75C9 on chromosome 9 Contains 2
             novel genes, complete sequence
          Length = 130513

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 66594 atgcatgcatgcatccatg 66612
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>emb|AL356073.15| Human DNA sequence from clone RP11-813O3 on chromosome 10, complete
              sequence
          Length = 165917

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     aatgcatgcatgcatccat 68
              |||||||||||||||||||
Sbjct: 123497 aatgcatgcatgcatccat 123515
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>emb|AL732462.20| Mouse DNA sequence from clone RP23-132J5 on chromosome 1, complete
            sequence
          Length = 91356

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 50   aatgcatgcatgcatccat 68
            |||||||||||||||||||
Sbjct: 5473 aatgcatgcatgcatccat 5455
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>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence
          Length = 164668

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 133296 atgcatgcatgcatccatg 133278
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>dbj|AK128451.1| Homo sapiens cDNA FLJ46594 fis, clone THYMU3045692
          Length = 2819

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  aatgcatgcatgcatccat 68
           |||||||||||||||||||
Sbjct: 399 aatgcatgcatgcatccat 417
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>gb|AC005010.2| Homo sapiens BAC clone GS1-110L19 from 8, complete sequence
          Length = 197498

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    ctaaatgcatgcatgcatc 65
             |||||||||||||||||||
Sbjct: 23027 ctaaatgcatgcatgcatc 23045
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>gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207306

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   atgcatgcatgcatccatg 69
            |||||||||||||||||||
Sbjct: 9052 atgcatgcatgcatccatg 9034
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>emb|BX571770.5| Zebrafish DNA sequence from clone DKEY-276I5 in linkage group 24,
              complete sequence
          Length = 210504

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 51     atgcatgcatgcatccatgggat 73
              |||||||||||||| ||||||||
Sbjct: 202878 atgcatgcatgcatgcatgggat 202900
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>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown,
             complete sequence
          Length = 210950

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 48    taaatgcatgcatgcatccatgg 70
             |||||| ||||||||||||||||
Sbjct: 11336 taaatgaatgcatgcatccatgg 11314
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>gb|AC158339.1| Homo sapiens chromosome 8 clone WI2-3382N4, complete sequence
          Length = 42713

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    ctaaatgcatgcatgcatc 65
             |||||||||||||||||||
Sbjct: 32265 ctaaatgcatgcatgcatc 32283
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>tpg|BK004861.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group)
            growth-regulating factor 6 (GRF6) gene, complete cds
          Length = 6870

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   tgcatgcatgcatccatgg 70
            |||||||||||||||||||
Sbjct: 5677 tgcatgcatgcatccatgg 5695
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 51       atgcatgcatgcatccatg 69
                |||||||||||||||||||
Sbjct: 15921412 atgcatgcatgcatccatg 15921394
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 51       atgcatgcatgcatccatg 69
                |||||||||||||||||||
Sbjct: 19599357 atgcatgcatgcatccatg 19599375



 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 51       atgcatgcatgcatccatg 69
                |||||||||||||||||||
Sbjct: 17525803 atgcatgcatgcatccatg 17525785
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 48      taaatgcatgcatgcatccatgg 70
               ||||||||||||||||| |||||
Sbjct: 1648925 taaatgcatgcatgcatgcatgg 1648903



 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 787784 atgcatgcatgcatccatg 787802
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 43       cgtcctaaatgcatgcatgcatccatg 69
                ||||||| |||||||||||||| ||||
Sbjct: 35063842 cgtcctacatgcatgcatgcatacatg 35063868



 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 52       tgcatgcatgcatccatgg 70
                |||||||||||||||||||
Sbjct: 29625469 tgcatgcatgcatccatgg 29625487
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 51      atgcatgcatgcatccatg 69
               |||||||||||||||||||
Sbjct: 1033797 atgcatgcatgcatccatg 1033779
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>gb|AC149590.5| Mus musculus BAC clone RP23-348L9 from chromosome 5, complete sequence
          Length = 196662

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 124341 atgcatgcatgcatccatg 124323
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>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete
             sequence
          Length = 132782

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    tgcatgcatgcatccatgg 70
             |||||||||||||||||||
Sbjct: 56677 tgcatgcatgcatccatgg 56695
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>gb|AC006360.2|AC006360 Homo sapiens PAC clone RP5-1140N14 from 14q24.3, complete sequence
          Length = 138271

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 54597 atgcatgcatgcatccatg 54615
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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
             sequence
          Length = 171376

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 43    cgtcctaaatgcatgcatgcatccatg 69
             ||||||| |||||||||||||| ||||
Sbjct: 41710 cgtcctacatgcatgcatgcatacatg 41684
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>gb|AC091182.5| Homo sapiens chromosome 8, clone RP11-527N22, complete sequence
          Length = 206852

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 62803 atgcatgcatgcatccatg 62821
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>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0494A10
          Length = 145576

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 71465 atgcatgcatgcatccatg 71447
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>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0698A04
          Length = 141079

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   atgcatgcatgcatccatg 69
            |||||||||||||||||||
Sbjct: 3111 atgcatgcatgcatccatg 3093
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>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0019B14
          Length = 127570

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 89981 atgcatgcatgcatccatg 89963
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>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 51   atgcatgcatgcatccatg 69
            |||||||||||||||||||
Sbjct: 8839 atgcatgcatgcatccatg 8857
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>gb|AC109256.11| Mus musculus chromosome 8, clone RP23-11D11, complete sequence
          Length = 242101

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 229754 atgcatgcatgcatccatg 229772
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>emb|BX005210.10| Zebrafish DNA sequence from clone DKEY-222F8 in linkage group 4,
            complete sequence
          Length = 207949

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 50   aatgcatgcatgcatccat 68
            |||||||||||||||||||
Sbjct: 5782 aatgcatgcatgcatccat 5764
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>gb|AC107631.20| Mus musculus chromosome 5, clone RP23-5M20, complete sequence
          Length = 225977

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 189594 atgcatgcatgcatccatg 189612
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>gb|AC155848.6| Mus musculus 6 BAC RP24-534P19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202657

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 181323 atgcatgcatgcatccatg 181305
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 51       atgcatgcatgcatccatg 69
                |||||||||||||||||||
Sbjct: 16008788 atgcatgcatgcatccatg 16008770
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>gb|AC149279.3| Mus musculus BAC clone RP24-89F23 from 7, complete sequence
          Length = 210311

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 151615 atgcatgcatgcatccatg 151633
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>emb|AL611934.18| Mouse DNA sequence from clone RP23-472A8 on chromosome 4, complete
             sequence
          Length = 184866

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    atgcatgcatgcatccatg 69
             |||||||||||||||||||
Sbjct: 33753 atgcatgcatgcatccatg 33771
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>emb|AL928963.8| Mouse DNA sequence from clone RP23-5K9 on chromosome 2, complete sequence
          Length = 216315

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     atgcatgcatgcatccatg 69
              |||||||||||||||||||
Sbjct: 187044 atgcatgcatgcatccatg 187062
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>gb|AC114494.2| Homo sapiens chromosome 1 clone RP11-439L8, complete sequence
          Length = 146301

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     aatgcatgcatgcatccat 68
              |||||||||||||||||||
Sbjct: 140637 aatgcatgcatgcatccat 140655


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 513,370
Number of Sequences: 3902068
Number of extensions: 513370
Number of successful extensions: 61431
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60469
Number of HSP's gapped (non-prelim): 925
length of query: 85
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 64
effective length of database: 17,151,101,840
effective search space: 1097670517760
effective search space used: 1097670517760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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