>PLXA1_MOUSE (P70206) Plexin-A1 precursor (Plexin-1) (Plex 1)|
          Length = 1894

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 62  APRKMYTYGEETRSIERITNVPCVRTFACVICMASAVRRRTYVRTCLL--LCSYLDTGER 235
           +P + Y Y    + + ++    CV+  +C +C+ S   R  +   C+L  +CS  D  ER
Sbjct: 491 SPNRQYLYAMTEKQVTQVPVESCVQYTSCELCLGS---RDPHCGWCVLHSICSRQDACER 547

Query: 236 PQ 241
            +
Sbjct: 548 AE 549

>PLXA1_HUMAN (Q9UIW2) Plexin-A1 precursor (Semaphorin receptor NOV)|
          Length = 1896

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 62  APRKMYTYGEETRSIERITNVPCVRTFACVICMASAVRRRTYVRTCLL--LCSYLDTGER 235
           +P   Y Y    + + R+    CV+  +C +C+ S   R  +   C+L  +CS  D  ER
Sbjct: 493 SPNHQYLYAMTEKQVTRVPVESCVQYTSCELCLGS---RDPHCGWCVLHSICSRRDACER 549

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +2

Query: 110  RITNVPCVRTFACVICMASAVRRRTYVRTCLLLCSYLDTGERPQIHNNLKCFLSLPAASK 289
            +IT V  ++ + CV C+   V  +    + LLLC   D      I  +  C L  P  + 
Sbjct: 1137 KITKVMLLKGWRCVECIVCEVCGQASDPSRLLLCDDCD------ISYHTYC-LDPPLLTV 1189

Query: 290  PGGGLRCSW 316
            P GG +C W
Sbjct: 1190 PKGGWKCKW 1198

>POLG_EC11G (P29813) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2194

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 194 YVRTYDDALHLPCISRMQTYARMEHLLFFRWIGSPPRMCTF 72
           YVR  + +  LP  S ++ Y + +H+    W+  PPR+C +
Sbjct: 788 YVRHVNGSSPLPMTSTVRMYFKPKHVK--AWVPRPPRLCQY 826

>POLG_CXB5P (Q03053) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2184

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 194 YVRTYDDALHLPCISRMQTYARMEHLLFFRWIGSPPRMCTF 72
           Y+R  +D    P +S ++ Y + +H+    W+  PPR+C +
Sbjct: 786 YMRHVNDGSPGPIVSTVRIYFKPKHVK--TWVPRPPRLCQY 824

>POLG_SVDVU (P13900) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A) (P2-3B); Core protein P2B (P2-5B); Core protein P2C
           (P2-X); C
          Length = 2184

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 194 YVRTYDDALHLPCISRMQTYARMEHLLFFRWIGSPPRMCTF 72
           Y+R  +D    P +S ++ Y + +H+    W+  PPR+C +
Sbjct: 786 YMRHVNDGGPGPIVSTVRIYFKPKHVK--TWVPRPPRLCQY 824

>POLG_SVDVH (P16604) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A) (P2-3B); Core protein P2B (P2-5B); Core protein P2C
           (P2-X); C
          Length = 2184

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 194 YVRTYDDALHLPCISRMQTYARMEHLLFFRWIGSPPRMCTF 72
           Y+R  +D    P +S ++ Y + +H+    W+  PPR+C +
Sbjct: 786 YMRHVNDGGPGPIVSTVRIYFKPKHVK--TWVPRPPRLCQY 824

>POLG_EC06C (Q66474) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2190

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 194 YVRTYDDALHLPCISRMQTYARMEHLLFFRWIGSPPRMCTF 72
           Y R  +D    P  S+++ Y + +H+    W+  PPR+C +
Sbjct: 787 YFRHVNDRTISPITSKVRIYFKPKHVK--AWVPRPPRLCEY 825

>POLG_EC09H (Q66849) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2192

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 207 KSKHVRTYVRRRTALAMHITHANVRTHGTFVILSMDRVSS 88
           K KHVR +V R   L  ++  ANV    T V  + D +++
Sbjct: 809 KPKHVRAWVPRPPRLCQYMNKANVNFEATAVTDTRDTINT 848

>IFRD1_MOUSE (P19182) Interferon-related developmental regulator 1 (Nerve growth|
           factor-inducible protein PC4) (TPA-induced sequence 7)
           (TIS7 protein)
          Length = 449

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 149 VICM-ASAVRRRTYVRTCLLLCSYLDTGERPQIHNNLKCF 265
           +IC  A++++ R    TC  +C ++ T +  ++++ L+CF
Sbjct: 174 IICDGAASIQARQTCATCFGVCCFIATDDITELYSTLECF 213

>NUOA_BUCBP (Q89AU6) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH|
          dehydrogenase I, chain A) (NDH-1, chain A)
          Length = 132

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 67 WGFLAFFFVVIKTCVIMIRL 8
          W F  FFF+ +  CV M+ +
Sbjct: 12 WAFFTFFFIAVSICVFMLSI 31

>WDR24_BRARE (Q7ZVL2) WD-repeat protein 24|
          Length = 779

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 101 SIERITNVPCVRTFACVICMASAVRRRTYVRTCLLLCSY 217
           S  R+  + CV+TFA V  +     RR ++ TC ++  +
Sbjct: 232 STNRVKEIYCVQTFASVARVKWRPERRYHLATCSMMVDH 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,834,771
Number of Sequences: 219361
Number of extensions: 979932
Number of successful extensions: 2159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2159
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)