>CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)|
          Length = 667

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 181 DAKTGATEPSGGIEQP*RIGWRRPFSSHISTLECPPSRVRPEL 309
           D+K  A EP  GI+ P R    +     I T   PPSR RP L
Sbjct: 583 DSKKDAVEPKRGIKMPSRRTTFKEKGKKIGTGRVPPSRERPPL 625

>ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)|
           (Aconitase)
          Length = 888

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 17  TYIHTYIHTYIERAKEKHTWKKQQQANMANSGNTSTYEWTVTSTYAQ 157
           +YI  ++   +   +  H +   Q+ N   + N+  Y+W   STY Q
Sbjct: 594 SYIEQFVTAELFEEEYGHVFSDSQKWNQIETENSKNYQWNQVSTYIQ 640

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 78  RNSSKQTWRTPETRRHTNGRSHQHMHKPRNGS 173
           R+ S+   R    RR+T  RSH H H+ R+ S
Sbjct: 53  RSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRS 84

>VPS_PSINU (Q9SLX9) Phloroisovalerophenone synthase (EC 2.3.1.156)|
           (Valerophenone synthase)
           (3-methyl-1-(trihydroxyphenyl)butan-1-one synthase)
          Length = 406

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 58  KRKAHLEETAASKHGELRKH----VDIRMDGHINICTSRGTVAADDAKTGATEPSGGI 219
           KR+ H+ E     H  +R +    +D+R D  +      G VAAD+A     +P   I
Sbjct: 74  KRRMHINEDILEAHPSIRSYHDNSLDVRQDMLVEEVPKLGKVAADNAIAEWGQPKSNI 131

>CYB6_CHLLT (Q59297) Cytochrome bc complex cytochrome b subunit|
          Length = 427

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 237 WLEAAFFFAHIYT*VPPLARPAGATGDLVAPVGPELGG 350
           W E AFF   + T VP +A P GA    +   GPE+GG
Sbjct: 214 WNELAFFATQVGTEVPKVA-PGGAFLVEILRGGPEVGG 250

>Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1|
          Length = 1561

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 26  HTYIHTYIERAKEKHTWKKQQQANMANSGNTSTYEWTVTST 148
           H Y   Y    ++   W K   A MA+ GN+ST   T T+T
Sbjct: 290 HDYAEIYTPSCEKLPAWMKNNPALMASGGNSST---TTTTT 327

>YNQA_CAEEL (Q21986) Hypothetical protein R13F6.10 in chromosome III|
          Length = 958

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 26  HTYIHTYIERAKEKHTWKKQQQANMA---NSGNTSTYEWTVTSTYAQAEER*QQMMRRLE 196
           H     ++  ++EK  +K+QQ+  M    + GN   Y W+V S   QA+E  +   + L 
Sbjct: 112 HNLTQLFMAYSREK-MYKEQQKIGMRLYKDFGNAPYYFWSVMSLIMQAQENPELGKKMLL 170

Query: 197 PL 202
           PL
Sbjct: 171 PL 172

>ENDD1_HUMAN (O94919) Endonuclease domain-containing 1 protein precursor (EC|
           3.1.30.-)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 189 LRIICCYRSSACAYVDVTVHSYVDV--FPEFAMFA 91
           LRI+CC   + C  + + V   VDV  FP + M A
Sbjct: 413 LRILCCLLKAICRVLSIPVRVLVDVATFPVYTMGA 447

>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11|
          Length = 319

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 18  HTYIHTYIHT*SEQKKSTLGRNSSKQTWRTPETRRHTNGRSHQHMHKPR 164
           HT+ H  IHT +         ++   T     T  HT   +H H HKPR
Sbjct: 86  HTFTHLCIHTLT---------HALTLTCAPTRTYAHTRAPTHVHPHKPR 125

>PHNL_DESVM (P21852) Periplasmic [NiFe] hydrogenase large subunit precursor (EC|
           1.12.2.1) (NiFe hydrogenlyase large chain)
          Length = 567

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 38  HTYIERAKEKHTWKKQQQANMANSGNTSTYEWTVTSTY 151
           H++ E A+ +H WK Q Q    +      Y W     Y
Sbjct: 341 HSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRY 378

>BUD31_YEAST (P25337) Bud site selection protein BUD31|
          Length = 157

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +3

Query: 54  EQKKSTLGRNSSKQTWRTPETRRHTNGRSHQHMHKPRNGSSR*CEDWSH*TKRGDRAAIA 233
           + K S L   S++Q W   +   H   R    ++  R   S+   DW    K  D+  IA
Sbjct: 35  KDKSSKLAAKSNEQLWEIMQLH-HQRSRYIYTLYYKRKAISKDLYDWLIKEKYADKLLIA 93

Query: 234 HWLEAAF 254
            W +  +
Sbjct: 94  KWRKTGY 100

>HAIR_HUMAN (O43593) Protein hairless|
          Length = 1189

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 339 RVLQEQLSRP*LR--PDARGG-ALKCRYVRRKRPPPANALWLLDP 214
           R +QE+   P LR  P  R G  L    VR + PPP   LWL +P
Sbjct: 807 RKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLPPPGALLWLQEP 851

>YQIB_CAEEL (Q09282) Hypothetical protein C45G9.11|
          Length = 354

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 152 HMLM*PSIRMSTCFRSSPCLLAAVSSKCAFLLLALCMYVCMYVCMWRIW 6
           H+ + P   +S+C     C    V   C  +  ALC++  M+   + +W
Sbjct: 183 HLELEPLCCLSSCLVRGGCTTVVVFELCYVVATALCIFEAMFRKKFALW 231

>CCKN_RAT (P01355) Cholecystokinins precursor (CCK) [Contains:|
           Cholecystokinin 39 (CCK39); Cholecystokinin 33 (CCK33);
           Cholecystokinin 22 (CCK22); Cholecystokinin 12 (CCK12);
           Cholecystokinin 8 (CCK8)]
          Length = 115

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 351 RRQARVLQEQLSRP*LRPDARGGALKCRYVRRKRPPPANALWLL 220
           RRQ R +     RP   P AR GAL  RY+++ R  P+  + +L
Sbjct: 41  RRQLRAVL----RPDSEPRARLGALLARYIQQVRKAPSGRMSVL 80

>CCKN_MOUSE (P09240) Cholecystokinins precursor (CCK) [Contains:|
           Cholecystokinin 33 (CCK33); Cholecystokinin 12 (CCK12);
           Cholecystokinin 8 (CCK8)]
          Length = 115

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 351 RRQARVLQEQLSRP*LRPDARGGALKCRYVRRKRPPPANALWLL 220
           RRQ R +     RP   P AR GAL  RY+++ R  P+  + +L
Sbjct: 41  RRQLRAVL----RPDREPRARLGALLARYIQQVRKAPSGRMSVL 80

>Y2948_STRCO (Q9L1U6) UPF0301 protein SCO2948|
          Length = 193

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 136 GHINICTSRGTVAADDAKTGATEPSGGIEQP*RIGWRRPFSS-HISTLECPPSRVRPELR 312
           G   +    G V+ D A   A  P G   +   +GWRR   +  +  LE PP  + P + 
Sbjct: 66  GEPGVVFQGGPVSLDSALGVAVVPGGASGERAPLGWRRVHGAIGLVDLEAPPELLAPAVG 125

Query: 313 A 315
           A
Sbjct: 126 A 126

>PIP1_DROME (P25455) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           classes I and II (EC 3.1.4.11) (Phosphoinositide
           phospholipase C)
          Length = 1312

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 181 HLLLPFLGLCIC*CDRPFVCRRVSGVRHVCLLLFLPSVLFFCSLYVCMYVCMYVCGEFGN 2
           H +LP +GLC              G RHV L   +   +   SL++C+ V  YV  +  N
Sbjct: 818 HRVLPVIGLC-------------PGYRHVNLRSEVGQPIALASLFLCVVVKDYVPDDLSN 864

>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 95  LLAAVSSKCAFLLLALCMYVCMYV 24
           L + +SS C  + + +CMYVCM V
Sbjct: 365 LCSILSSVCVCVCVCVCMYVCMCV 388

>GTR11_HUMAN (Q9BYW1) Solute carrier family 2, facilitated glucose transporter|
           member 11 (Glucose transporter type 11) (Glucose
           transporter type 10)
          Length = 496

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 187 SHHLLLPFLGLCIC 146
           SH L +PFLG+C+C
Sbjct: 434 SHFLYVPFLGVCVC 447

>GEM_PONPY (Q5R541) GTP-binding protein GEM|
          Length = 296

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 60  KKSTLGRNSSKQTWRTPETRRHTNGRSHQHMHKPRNGSSR*CED 191
           ++ T+G    +Q W  P   RH   +   H +  RN  S   ED
Sbjct: 9   RQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED 52

>GEM_HUMAN (P55040) GTP-binding protein GEM (GTP-binding mitogen-induced|
           T-cell protein) (RAS-like protein KIR)
          Length = 296

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 60  KKSTLGRNSSKQTWRTPETRRHTNGRSHQHMHKPRNGSSR*CED 191
           ++ T+G    +Q W  P   RH   +   H +  RN  S   ED
Sbjct: 9   RQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED 52

>MYCN_MARMO (Q61976) N-myc proto-oncogene protein (N-myc1)|
          Length = 460

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 349 PPSSGPTGATKSPVAPAGRARGGT 278
           PP++GP         PAGR  GGT
Sbjct: 141 PPAAGPATPGAGAANPAGRGHGGT 164

>ERP_MYCTU (P0A5P4) Exported repetitive protein precursor (Cell surface|
           protein pirG) (EXP53)
          Length = 284

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 282 PPLARPAGATGDLVAPVG--PELGGA 353
           P L  P GAT  L +P G  P LGGA
Sbjct: 149 PALTSPTGATPGLTSPTGLDPALGGA 174

>ERP_MYCBO (P0A5P5) Exported repetitive protein precursor (Cell surface|
           protein pirG) (EXP53)
          Length = 284

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 282 PPLARPAGATGDLVAPVG--PELGGA 353
           P L  P GAT  L +P G  P LGGA
Sbjct: 149 PALTSPTGATPGLTSPTGLDPALGGA 174

>EMBA_MYCAV (P71485) Probable arabinosyltransferase A (EC 2.4.2.-)|
          Length = 1108

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 244  RRPFSSHISTLECPPSRVRPELRAT 318
            +RPFS H+   E P  R+ P+ + T
Sbjct: 1004 QRPFSEHLGVAELPAYRILPDRKQT 1028

>HXD11_CHICK (P24342) Homeobox protein Hox-D11 (Chox-4.6) (GHOX-4.6) (Chox-4E)|
          Length = 280

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 281 HSSVDMCEEKGRLQPMRYGCSIPPLGSVAPVFASSAATVP 162
           HS  +   +KG L+P    CS  P G    V  +S A  P
Sbjct: 151 HSEGEGDADKGELKPQHSACSKAPSGQEKKVTTASGAASP 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,879,383
Number of Sequences: 219361
Number of extensions: 1159907
Number of successful extensions: 4145
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4120
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)