ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet16g06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0034E03 map near 50283S, complete sequence Length = 134074 Score = 349 bits (176), Expect = 2e-93 Identities = 182/184 (98%) Strand = Plus / Minus Query: 1 acaccgtataatgtacacacagtatatatttatacgtatttcaacaaagcggaattgtac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60790 acaccgtataatgtacacacagtatatatttatacgtatttcaacaaagcggaattgtac 60731 Query: 61 acatacgacgtacatacacagcgtactttcacagtacaaacaacacgcagacacggtccg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60730 acatacgacgtacatacacagcgtactttcacagtacaaacaacacgcagacacggtccg 60671 Query: 121 tactggaaaacgccatcacacattcacactcatcacacgacagtaacattttttctttcc 180 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 60670 tactggagaacgccatcacacattcacactcatcacacgacagtaacattttttttttcc 60611 Query: 181 tttt 184 |||| Sbjct: 60610 tttt 60607
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 349 bits (176), Expect = 2e-93 Identities = 182/184 (98%) Strand = Plus / Plus Query: 1 acaccgtataatgtacacacagtatatatttatacgtatttcaacaaagcggaattgtac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14766270 acaccgtataatgtacacacagtatatatttatacgtatttcaacaaagcggaattgtac 14766329 Query: 61 acatacgacgtacatacacagcgtactttcacagtacaaacaacacgcagacacggtccg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14766330 acatacgacgtacatacacagcgtactttcacagtacaaacaacacgcagacacggtccg 14766389 Query: 121 tactggaaaacgccatcacacattcacactcatcacacgacagtaacattttttctttcc 180 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 14766390 tactggagaacgccatcacacattcacactcatcacacgacagtaacattttttttttcc 14766449 Query: 181 tttt 184 |||| Sbjct: 14766450 tttt 14766453 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 28184702 acattttttctttcctttt 28184720
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 349 bits (176), Expect = 2e-93 Identities = 182/184 (98%) Strand = Plus / Plus Query: 1 acaccgtataatgtacacacagtatatatttatacgtatttcaacaaagcggaattgtac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14846707 acaccgtataatgtacacacagtatatatttatacgtatttcaacaaagcggaattgtac 14846766 Query: 61 acatacgacgtacatacacagcgtactttcacagtacaaacaacacgcagacacggtccg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14846767 acatacgacgtacatacacagcgtactttcacagtacaaacaacacgcagacacggtccg 14846826 Query: 121 tactggaaaacgccatcacacattcacactcatcacacgacagtaacattttttctttcc 180 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 14846827 tactggagaacgccatcacacattcacactcatcacacgacagtaacattttttttttcc 14846886 Query: 181 tttt 184 |||| Sbjct: 14846887 tttt 14846890 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 28169580 acattttttctttcctttt 28169598
>gb|U60097.2|OSU60097 Oryza sativa dehydrin mRNA, complete cds Length = 864 Score = 309 bits (156), Expect = 2e-81 Identities = 166/168 (98%), Gaps = 1/168 (0%) Strand = Plus / Minus Query: 17 acacagtatatatttatacgtatttcaacaaagcggaattgtacacatacgacgtacata 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 acacagtatatatttatacgtatttcaacaaagcggaattgtacacatacgacgtacata 782 Query: 77 cacagcgtactttcacagtacaaacaacacgcagacacggtccgtactggaaaacgccat 136 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 781 cacagcgtactttcacagtacaaacaacacgcagacacggtccgtactggagaacgccat 722 Query: 137 cacacattcacactcatcacacgacagtaacattttttctttcctttt 184 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 721 cacacattcacactcatcacacgacagtaacatttttt-tttcctttt 675
>emb|Y00842.1|OSRAB21 Rice rab21 gene for water-stress inducible protein RAB21 Length = 2537 Score = 254 bits (128), Expect = 8e-65 Identities = 157/166 (94%), Gaps = 8/166 (4%) Strand = Plus / Minus Query: 26 atatttatacgtatttcaacaa-------agcggaattgtacacatacgacgtacataca 78 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2427 atatttatacgtatttcaacaacagtataagcggaattgtacacatacgacgtacataca 2368 Query: 79 cagcgtactttcacagtacaaacaacacgcagacacggtccgtactggaaaacgccatca 138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 2367 cagcgtactttcacagtacaaacaacacgcagacacggtccgtactggagaacgccatca 2308 Query: 139 cacattcacactcatcacacgacagtaacattttttctttcctttt 184 |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2307 cacattcacactcatcacacgacagtaacatttttt-tttcctttt 2263
>emb|AL928895.5| Mouse DNA sequence from clone RP23-338J3 on chromosome 2, complete sequence Length = 120507 Score = 46.1 bits (23), Expect = 0.037 Identities = 23/23 (100%) Strand = Plus / Minus Query: 162 agtaacattttttctttcctttt 184 ||||||||||||||||||||||| Sbjct: 29298 agtaacattttttctttcctttt 29276
>gb|AC145868.2| Pan troglodytes BAC clone RP43-39F11 from 7, complete sequence Length = 209787 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 gtaacattttttctttcctttt 184 |||||||||||||||||||||| Sbjct: 62734 gtaacattttttctttcctttt 62713
>gb|AC074000.8| Homo sapiens BAC clone CTD-2023N18 from 7, complete sequence Length = 136723 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 163 gtaacattttttctttcctttt 184 |||||||||||||||||||||| Sbjct: 62068 gtaacattttttctttcctttt 62089
>gb|AC023137.5| Homo sapiens BAC clone RP11-513P11 from 2, complete sequence Length = 72963 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 gtaacattttttctttcctttt 184 |||||||||||||||||||||| Sbjct: 46986 gtaacattttttctttcctttt 46965
>emb|AL035073.7|HS997O15 Human DNA sequence from clone RP5-997O15 on chromosome 20p11.21-12 Contains genomic marker D20S904, STSs and GSSs, complete sequence Length = 97011 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 acacacagtatatatttatac 35 ||||||||||||||||||||| Sbjct: 9165 acacacagtatatatttatac 9145
>gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, complete sequence Length = 200968 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 taacattttttctttcctttt 184 ||||||||||||||||||||| Sbjct: 64842 taacattttttctttcctttt 64822
>emb|BX545848.23| Zebrafish DNA sequence from clone DKEY-8O19 in linkage group 20 Contains the gene for a novel protein (zgc:63746), the gene for a novel protein (zgc:55614), the gene for the 5' end of a novel protein similar to mouse and human cyclin-dependent kinase (CDC2-like) 11 (CDK11), the gene for a novel protein similar to vertebrate mitogen-activated protein kinase kinase kinase 5 (MAP3K5), a novel gene and eleven CpG islands, complete sequence Length = 199986 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 gtataatgtacacacagtata 26 ||||||||||||||||||||| Sbjct: 108561 gtataatgtacacacagtata 108581
>emb|AL833579.1|HSM804892 Homo sapiens genomic DNA; cDNA DKFZp686L0256 (from clone DKFZp686L0256) Length = 3459 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 taacattttttctttcctttt 184 ||||||||||||||||||||| Sbjct: 1646 taacattttttctttcctttt 1626
>gb|AC068025.12| Homo sapiens chromosome 17, clone RP11-802D6, complete sequence Length = 190194 Score = 42.1 bits (21), Expect = 0.58 Identities = 27/29 (93%) Strand = Plus / Plus Query: 11 atgtacacacagtatatatttatacgtat 39 ||||| ||||||||||||| ||||||||| Sbjct: 89624 atgtatacacagtatatatatatacgtat 89652 Score = 42.1 bits (21), Expect = 0.58 Identities = 27/29 (93%) Strand = Plus / Plus Query: 11 atgtacacacagtatatatttatacgtat 39 ||||| ||||||||||||| ||||||||| Sbjct: 89597 atgtatacacagtatatatatatacgtat 89625 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 acacagtatatatttatacgtat 39 ||||||||||||| ||||||||| Sbjct: 89576 acacagtatatatatatacgtat 89598 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 acacagtatatatttatacgtat 39 ||||||||||||| ||||||||| Sbjct: 89549 acacagtatatatatatacgtat 89571
>gb|AC068506.10| Homo sapiens chromosome 18, clone RP11-96A15, complete sequence Length = 175885 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 taacattttttctttcctttt 184 ||||||||||||||||||||| Sbjct: 91873 taacattttttctttcctttt 91893
>gb|AC092837.5| Homo sapiens BAC clone RP11-137J9 from 2, complete sequence Length = 147820 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 taacattttttctttcctttt 184 ||||||||||||||||||||| Sbjct: 87980 taacattttttctttcctttt 88000
>gb|AC109472.4| Homo sapiens chromosome 5 clone RP11-398J12, complete sequence Length = 89357 Score = 42.1 bits (21), Expect = 0.58 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 tatatttatacgtatttcaacaaag 49 ||||||||||||||||||| ||||| Sbjct: 77237 tatatttatacgtatttcatcaaag 77213
>emb|BX248523.8| Zebrafish DNA sequence from clone CH211-257G8 in linkage group 20, complete sequence Length = 169849 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 gtataatgtacacacagtata 26 ||||||||||||||||||||| Sbjct: 56393 gtataatgtacacacagtata 56373
>dbj|AP008950.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT44M23, TM1572b, complete sequence Length = 38431 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 atcacacattcacactcatca 155 ||||||||||||||||||||| Sbjct: 30425 atcacacattcacactcatca 30405
>gb|AC118213.8| Mus musculus chromosome 1, clone RP24-529B23, complete sequence Length = 133485 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ctggaaaacgccatcacacattca 146 |||||||| ||||||||||||||| Sbjct: 93926 ctggaaaaagccatcacacattca 93903
>gb|AC161127.3| Pan troglodytes BAC clone CH251-452P2 from chromosome 7, complete sequence Length = 205655 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cactcatcacacgacagtaacatttttt 174 ||||||| |||| ||||||||||||||| Sbjct: 109825 cactcatgacacaacagtaacatttttt 109798
>gb|AC099606.13| Mus musculus chromosome 7, clone RP23-360N6, complete sequence Length = 193975 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tactttcacagtacaaacaa 103 |||||||||||||||||||| Sbjct: 113194 tactttcacagtacaaacaa 113213
>emb|AL662897.6| Human DNA sequence from clone RP11-309C8 on chromosome X, complete sequence Length = 84987 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 taacattttttctttccttt 183 |||||||||||||||||||| Sbjct: 6748 taacattttttctttccttt 6729
>emb|AL356374.13| Human DNA sequence from clone RP11-454P17 on chromosome 6, complete sequence Length = 21183 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 taacattttttctttccttt 183 |||||||||||||||||||| Sbjct: 18342 taacattttttctttccttt 18323
>emb|AL121882.10|HSJ223D17 Human DNA sequence from clone RP1-223D17 on chromosome Xq13.2-21.1, complete sequence Length = 87791 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 taacattttttctttccttt 183 |||||||||||||||||||| Sbjct: 80592 taacattttttctttccttt 80611
>gb|AC106707.9| Homo sapiens 3 BAC RP11-538P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189059 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gacagtaacattttttcttt 178 |||||||||||||||||||| Sbjct: 153892 gacagtaacattttttcttt 153911
>gb|AC097636.2| Homo sapiens chromosome 3 clone RP11-314A5, complete sequence Length = 214687 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 aacattttttctttcctttt 184 |||||||||||||||||||| Sbjct: 62709 aacattttttctttcctttt 62690
>gb|AC010389.8| Homo sapiens chromosome 5 clone CTD-2077I5, complete sequence Length = 134060 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 taacattttttctttccttt 183 |||||||||||||||||||| Sbjct: 114525 taacattttttctttccttt 114506
>emb|BX005070.10| Zebrafish DNA sequence from clone DKEY-13B19 in linkage group 17, complete sequence Length = 242955 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 catcacacattcacactcat 153 |||||||||||||||||||| Sbjct: 30514 catcacacattcacactcat 30495
>emb|BX004887.2| Zebrafish DNA sequence from clone CH211-150E4, complete sequence Length = 186834 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 aatgtacacacagtatatatttat 33 |||||||| ||||||||||||||| Sbjct: 130084 aatgtacatacagtatatatttat 130107
>gb|U73465.1|HSU73465 Human Xq28 cosmid U247A3 from LLOXNC01 X chromosome library, complete sequence Length = 43178 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 taacattttttctttccttt 183 |||||||||||||||||||| Sbjct: 14638 taacattttttctttccttt 14657
>emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chromosome 2, complete sequence Length = 158364 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 agtatatatttatacgtatttcaa 44 ||||||||||||||| |||||||| Sbjct: 118608 agtatatatttatacttatttcaa 118585
>gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, complete sequence Length = 220084 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 aacattttttctttcctttt 184 |||||||||||||||||||| Sbjct: 117213 aacattttttctttcctttt 117194
>dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B189M11, complete sequences Length = 105288 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 aacattttttctttcctttt 184 |||||||||||||||||||| Sbjct: 87328 aacattttttctttcctttt 87309
>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence Length = 182660 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 162 agtaacattttttctttcc 180 ||||||||||||||||||| Sbjct: 104808 agtaacattttttctttcc 104790
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 143265 acattttttctttcctttt 143283
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 162 agtaacattttttctttcc 180 ||||||||||||||||||| Sbjct: 2053377 agtaacattttttctttcc 2053395
>gb|AC119897.8| Mus musculus chromosome 1, clone RP24-227F14, complete sequence Length = 195375 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 tatatatttatacgtattt 41 ||||||||||||||||||| Sbjct: 103467 tatatatttatacgtattt 103485
>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome Length = 706569 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 165 aacattttttctttccttt 183 ||||||||||||||||||| Sbjct: 303653 aacattttttctttccttt 303635
>gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete sequence Length = 130193 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 gccatcacacattcacact 150 ||||||||||||||||||| Sbjct: 20816 gccatcacacattcacact 20834
>gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, complete sequence Length = 180139 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 164 taacattttttctttcctt 182 ||||||||||||||||||| Sbjct: 133276 taacattttttctttcctt 133294
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 gccatcacacattcacact 150 ||||||||||||||||||| Sbjct: 25281892 gccatcacacattcacact 25281874
>gb|AC165287.2| Mus musculus BAC clone RP24-230H12 from chromosome 14, complete sequence Length = 161004 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 tatatatttatacgtattt 41 ||||||||||||||||||| Sbjct: 127793 tatatatttatacgtattt 127811
>gb|AC183679.3| Pan troglodytes BAC clone CH251-400O3 from chromosome 10, complete sequence Length = 203130 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 gtataatgtacacacagta 24 ||||||||||||||||||| Sbjct: 201298 gtataatgtacacacagta 201280
>gb|AY371697.2| Homo sapiens integrin, alpha 8 (ITGA8) gene, complete cds Length = 206310 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 83 gtactttcacagtacaaacaaca 105 ||||||||||||||| ||||||| Sbjct: 205030 gtactttcacagtaccaacaaca 205008
>ref|XM_749498.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g10280) partial mRNA Length = 2379 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 caaacaacacgcagacacg 115 ||||||||||||||||||| Sbjct: 313 caaacaacacgcagacacg 331
>ref|NM_005270.3| Homo sapiens GLI-Kruppel family member GLI2 (GLI2), mRNA Length = 6549 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 5674 acattttttctttcctttt 5656
>gb|AC111007.4| Mus musculus BAC clone RP23-226I10 from 3, complete sequence Length = 176259 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 106943 acattttttctttcctttt 106961
>gb|AC146330.33| Medicago truncatula clone mth2-7g7, complete sequence Length = 117139 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 gccatcacacattcacact 150 ||||||||||||||||||| Sbjct: 17265 gccatcacacattcacact 17283
>emb|AL596442.33| Human DNA sequence from clone RP11-302L19 on chromosome 6 Contains a novel gene, a ribosomal protein L12 (RPL12) and five CpG islands, complete sequence Length = 110817 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 43961 acattttttctttcctttt 43943
>emb|AL590636.12| Human DNA sequence from clone RP11-50E19 on chromosome 10 Contains the 3' end of the ITGA8 gene for integrin alpha 8, complete sequence Length = 141790 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 83 gtactttcacagtacaaacaaca 105 ||||||||||||||| ||||||| Sbjct: 59632 gtactttcacagtaccaacaaca 59654
>emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chromosome 10 Contains a novel gene and a novel MAM domain containing protein, complete sequence Length = 150889 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 gtataatgtacacacagta 24 ||||||||||||||||||| Sbjct: 68873 gtataatgtacacacagta 68855
>ref|XM_777399.1| PREDICTED: Strongylocentrotus purpuratus similar to Protein CGI-38 (LOC577151), mRNA Length = 1255 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 161 cagtaacattttttctttc 179 ||||||||||||||||||| Sbjct: 1036 cagtaacattttttctttc 1018
>emb|AL390883.13| Human DNA sequence from clone RP11-230N22 on chromosome 9, complete sequence Length = 76353 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 36799 acattttttctttcctttt 36817
>emb|AL139812.11| Human DNA sequence from clone RP1-19N1 on chromosome Xq21.33-22.3 Contains the gene for a novel protein similar to chondroitin sulfate GalNAcT-2 (GALNACT-2), complete sequence Length = 144242 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 140 acattcacactcatcacac 158 ||||||||||||||||||| Sbjct: 74264 acattcacactcatcacac 74246
>gb|AC157917.4| Mus musculus chromosome 3, clone RP23-120L6, complete sequence Length = 206959 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 63530 acattttttctttcctttt 63548
>emb|AL034377.1|HS751H9 Human DNA sequence from clone RP4-751H9 on chromosome 6q13 Contains the 3' end of a novel gene, complete sequence Length = 104033 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 164 taacattttttctttcctt 182 ||||||||||||||||||| Sbjct: 103378 taacattttttctttcctt 103360
>gb|AC018664.11| Homo sapiens chromosome 7 clone RP11-109E9, complete sequence Length = 114848 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 agtatatatttatacgtat 39 ||||||||||||||||||| Sbjct: 88830 agtatatatttatacgtat 88812
>gb|AC114279.2| Homo sapiens chromosome 5 clone CTD-2281M20, complete sequence Length = 109918 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 tacacacagtatatatttatacg 36 |||||||||||||||| |||||| Sbjct: 89875 tacacacagtatatatatatacg 89853 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 tacacacagtatatatttatacg 36 |||||||||||||||| |||||| Sbjct: 89845 tacacacagtatatatatatacg 89823
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 cagcgtactttcacagtac 97 ||||||||||||||||||| Sbjct: 323574 cagcgtactttcacagtac 323592
>gb|AC152419.2| Pan troglodytes BAC clone RP43-4P10 from chromosome 7, complete sequence Length = 154622 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 gtataatgtacacacagta 24 ||||||||||||||||||| Sbjct: 111817 gtataatgtacacacagta 111835
>emb|BX000355.5| Mouse DNA sequence from clone RP23-475B18 on chromosome 11 Contains part of the Trim37 gene for tripartite motif protein 37, complete sequence Length = 33977 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 28723 acattttttctttcctttt 28705
>emb|BX649413.8| Mouse DNA sequence from clone RP23-193P21 on chromosome 4 Contains the 5' end of the Dbccr1 gene for deleted in bladder cancer 1, complete sequence Length = 186197 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 163538 acattttttctttcctttt 163520
>emb|BX927236.8| Zebrafish DNA sequence from clone DKEY-104G13 in linkage group 17, complete sequence Length = 106881 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 128 aaacgccatcacacattca 146 ||||||||||||||||||| Sbjct: 103790 aaacgccatcacacattca 103808
>emb|BX571739.9| Zebrafish DNA sequence from clone DKEYP-75C7 in linkage group 15, complete sequence Length = 139312 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 atatatttatacgtatttc 42 ||||||||||||||||||| Sbjct: 21457 atatatttatacgtatttc 21439
>gb|AC093230.2| Homo sapiens chromosome 19 clone LLNLF-130H12, complete sequence Length = 46127 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 gtatatatttatacgtatt 40 ||||||||||||||||||| Sbjct: 13272 gtatatatttatacgtatt 13254
>emb|CR318590.4| Zebrafish DNA sequence from clone CH211-227G21 in linkage group 19, complete sequence Length = 169599 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 tgtacacacagtatatatt 30 ||||||||||||||||||| Sbjct: 13097 tgtacacacagtatatatt 13079
>gb|AC023494.31| Homo sapiens 3 BAC RP11-59M4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 57963 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 34644 acattttttctttcctttt 34662
>gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold Length = 360990 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 164 taacattttttctttcctt 182 ||||||||||||||||||| Sbjct: 82330 taacattttttctttcctt 82312
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 acatacgacgtacatacac 79 ||||||||||||||||||| Sbjct: 974780 acatacgacgtacatacac 974762
>gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222518 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 atgtacacacagtatatat 29 ||||||||||||||||||| Sbjct: 128905 atgtacacacagtatatat 128887
>dbj|AK142829.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930024F05 product:unclassifiable, full insert sequence Length = 4891 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 1981 acattttttctttcctttt 1963
>gb|AC016764.8| Homo sapiens BAC clone RP11-549G13 from 2, complete sequence Length = 155868 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 77895 acattttttctttcctttt 77877
>gb|AC022880.10| Homo sapiens chromosome , clone RP11-436P7, complete sequence Length = 166306 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 152601 acattttttctttcctttt 152619
>gb|AC022690.6| Homo sapiens chromosome 8, clone RP11-480O10, complete sequence Length = 178316 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 162793 acattttttctttcctttt 162775
>gb|AC161478.5| Pan troglodytes BAC clone CH251-170F20 from chromosome unknown, complete sequence Length = 150487 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 164 taacattttttctttcctt 182 ||||||||||||||||||| Sbjct: 18873 taacattttttctttcctt 18855
>gb|AC161601.4| Mus musculus BAC clone RP23-333L19 from chromosome 3, complete sequence Length = 200393 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 180856 acattttttctttcctttt 180838
>gb|AC159215.2| Pan troglodytes BAC clone CH251-458G5 from chromosome unknown, complete sequence Length = 208565 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 164 taacattttttctttcctt 182 ||||||||||||||||||| Sbjct: 206593 taacattttttctttcctt 206611
>gb|AC154437.2| Mus musculus BAC clone RP24-194D17 from chromosome 13, complete sequence Length = 180558 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 acacagtatatatttatac 35 ||||||||||||||||||| Sbjct: 82955 acacagtatatatttatac 82973
>dbj|AK052038.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230038P21 product:unclassifiable, full insert sequence Length = 2068 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 tatatatttatacgtattt 41 ||||||||||||||||||| Sbjct: 393 tatatatttatacgtattt 375
>gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-188I24, complete sequence Length = 145165 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 6853 acattttttctttcctttt 6835
>gb|AC021850.8|AC021850 Homo sapiens BAC clone RP11-389E17 from 4, complete sequence Length = 206966 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 162 agtaacattttttctttcctttt 184 ||||||||||||| ||||||||| Sbjct: 71925 agtaacattttttttttcctttt 71903
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 atcacacattcacactcat 153 ||||||||||||||||||| Sbjct: 19189042 atcacacattcacactcat 19189024
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 gtataatgtacacacagta 24 ||||||||||||||||||| Sbjct: 29465737 gtataatgtacacacagta 29465755
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 aaaacgccatcacacattc 145 ||||||||||||||||||| Sbjct: 4498819 aaaacgccatcacacattc 4498801
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 gccatcacacattcacact 150 ||||||||||||||||||| Sbjct: 25373201 gccatcacacattcacact 25373183
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 gccatcacacattcacact 150 ||||||||||||||||||| Sbjct: 10667271 gccatcacacattcacact 10667253
>gb|AC092311.3| Homo sapiens chromosome 19 clone LLNLR-278C11, complete sequence Length = 27896 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gtatatatttatacgtatt 40 ||||||||||||||||||| Sbjct: 11515 gtatatatttatacgtatt 11533
>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence Length = 245443 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 136 tcacacattcacactcatcacac 158 |||||||||||||| |||||||| Sbjct: 61659 tcacacattcacacacatcacac 61637
>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0706B05 Length = 187835 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 gccatcacacattcacact 150 ||||||||||||||||||| Sbjct: 161894 gccatcacacattcacact 161876
>gb|AC005412.8| Homo sapiens chromosome 17, clone RP11-22N12, complete sequence Length = 183694 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 acacagtatatatttatacgtat 39 ||||||||||||| ||||||||| Sbjct: 8851 acacagtatatatatatacgtat 8829 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 acacagtatatatttatacgtat 39 ||||||||||||| ||||||||| Sbjct: 8824 acacagtatatatatatacgtat 8802 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 acacagtatatatttatacgtat 39 ||||||||||||| ||||||||| Sbjct: 8797 acacagtatatatatatacgtat 8775 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 acacagtatatatttatacgtat 39 ||||||||||||| ||||||||| Sbjct: 8770 acacagtatatatatatacgtat 8748 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 acacagtatatatttatacgtat 39 ||||||||||||| ||||||||| Sbjct: 8743 acacagtatatatatatacgtat 8721 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 acacagtatatatttatacgtat 39 ||||||||||||| ||||||||| Sbjct: 8716 acacagtatatatatatacgtat 8694
>gb|AC097347.6| Homo sapiens X BAC RP11-1M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160325 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 acacagtatatatttatac 35 ||||||||||||||||||| Sbjct: 114583 acacagtatatatttatac 114601
>gb|AC105267.3| Homo sapiens chromosome 3 clone CTD-3211M3, complete sequence Length = 156795 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 acacacagtatatatttat 33 ||||||||||||||||||| Sbjct: 127223 acacacagtatatatttat 127241
>gb|AC004134.1|AC004134 Homo sapiens chromosome 17, clone hCIT.507_E_2, complete sequence Length = 119307 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 164 taacattttttctttcctt 182 ||||||||||||||||||| Sbjct: 16940 taacattttttctttcctt 16922
>gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-15, complete sequence Length = 178635 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 agtatatatttatacgtat 39 ||||||||||||||||||| Sbjct: 102 agtatatatttatacgtat 84
>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005A05 Length = 162520 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 aaaacgccatcacacattc 145 ||||||||||||||||||| Sbjct: 93549 aaaacgccatcacacattc 93531
>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0470C02 Length = 158849 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 aaaacgccatcacacattc 145 ||||||||||||||||||| Sbjct: 146500 aaaacgccatcacacattc 146482
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 cagcgtactttcacagtac 97 ||||||||||||||||||| Sbjct: 378892 cagcgtactttcacagtac 378910
>gb|AC006021.2|AC006021 Homo sapiens PAC clone RP5-1129L24 from 7q32-q34, complete sequence Length = 98240 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 160 acagtaacattttttcttt 178 ||||||||||||||||||| Sbjct: 37913 acagtaacattttttcttt 37895
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 gtataatgtacacacagta 24 ||||||||||||||||||| Sbjct: 128659 gtataatgtacacacagta 128677
>emb|CR812466.18| Zebrafish DNA sequence from clone CH211-269M1 in linkage group 1, complete sequence Length = 138505 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 136972 acattttttctttcctttt 136954
>gb|AC118202.8| Mus musculus chromosome 10, clone RP23-378J3, complete sequence Length = 213862 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 atgtacacacagtatatat 29 ||||||||||||||||||| Sbjct: 53909 atgtacacacagtatatat 53891
>gb|AC174647.2| Mus musculus BAC clone RP23-25C24 from chromosome 14, complete sequence Length = 238300 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 114818 acattttttctttcctttt 114800
>gb|AC121139.20| Mus musculus chromosome 5, clone RP23-429G1, complete sequence Length = 206249 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 12 tgtacacacagtatatatttata 34 |||||||||||||||||| |||| Sbjct: 57943 tgtacacacagtatatatgtata 57921
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 atcacacattcacactcat 153 ||||||||||||||||||| Sbjct: 122564 atcacacattcacactcat 122546
>gb|AC134253.4| Mus musculus BAC clone RP23-473B17 from 14, complete sequence Length = 200426 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 tatatatttatacgtattt 41 ||||||||||||||||||| Sbjct: 48266 tatatatttatacgtattt 48284
>dbj|AB209354.1| Homo sapiens mRNA for GLI-Kruppel family member GLI2 isoform beta variant protein Length = 5197 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 4093 acattttttctttcctttt 4075
>gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome 14, complete sequence Length = 244795 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 166 acattttttctttcctttt 184 ||||||||||||||||||| Sbjct: 22400 acattttttctttcctttt 22382
>gb|AC164875.14| Mus musculus chromosome 1, clone RP23-59P14, complete sequence Length = 250957 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 12 tgtacacacagtatatatttata 34 ||||||| ||||||||||||||| Sbjct: 146030 tgtacactcagtatatatttata 146008 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,562,091 Number of Sequences: 3902068 Number of extensions: 2562091 Number of successful extensions: 234312 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 233160 Number of HSP's gapped (non-prelim): 1152 length of query: 184 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 162 effective length of database: 17,147,199,772 effective search space: 2777846363064 effective search space used: 2777846363064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
