ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet16f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ORCT2_HUMAN (Q96BI1) Organic cation transporter-like protein 2 (... 31 1.0
2FL3H_MATIN (Q05965) Naringenin,2-oxoglutarate 3-dioxygenase (EC ... 30 1.3
3FL3H_PETHY (Q07353) Naringenin,2-oxoglutarate 3-dioxygenase (EC ... 30 1.3
4FL3H_ARATH (Q9S818) Naringenin,2-oxoglutarate 3-dioxygenase (EC ... 30 1.3
5YZ31_AQUAE (O66421) Hypothetical protein aq_aa31 30 2.3
6E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C) 28 5.0
7E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B) 28 5.0
8E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (... 28 5.0
9JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylatio... 28 6.6

>ORCT2_HUMAN (Q96BI1) Organic cation transporter-like protein 2 (Imprinted|
           multi-membrane spanning polyspecific transporter-related
           protein 1) (Efflux transporter-like protein)
           (Tumor-suppressing subchromosomal transferable fragment
           candidate gene 5 prote
          Length = 408

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 101 RVASFVFVLLLFSTHWMSAVFHFLLLI 21
           R +  VF+++  +  WMS+VFHF LL+
Sbjct: 293 RASVLVFIVVGLAMAWMSSVFHFCLLV 319



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>FL3H_MATIN (Q05965) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9)|
           (Flavonone-3-hydroxylase) (F3H) (FHT) (Fragment)
          Length = 357

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 19  FISRRKWKTADIQCVLNNNSTKTKLATRQ 105
           F+S  ++K AD Q V+N+NS++  +AT Q
Sbjct: 263 FLSNGRFKNADHQAVVNSNSSRLSIATFQ 291



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>FL3H_PETHY (Q07353) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9)|
           (Flavonone-3-hydroxylase) (F3H) (FHT) (Fragment)
          Length = 369

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 19  FISRRKWKTADIQCVLNNNSTKTKLATRQ 105
           F+S  ++K AD Q V+N+NS++  +AT Q
Sbjct: 267 FLSNGRFKNADHQAVVNSNSSRLSIATFQ 295



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>FL3H_ARATH (Q9S818) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9)|
           (Flavanone 3-hydroxylase) (Naringenin 3-dioxygenase)
           (FH3) (TRANSPARENT TESTA 6 protein)
          Length = 358

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 19  FISRRKWKTADIQCVLNNNSTKTKLATRQ 105
           F+S  ++K AD Q V+N+NS++  +AT Q
Sbjct: 264 FLSNGRFKNADHQAVVNSNSSRLSIATFQ 292



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>YZ31_AQUAE (O66421) Hypothetical protein aq_aa31|
          Length = 270

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 34  KWKTADIQCVLNNNSTKTKLATRQV 108
           +WK A I   LNNN  K K+AT  V
Sbjct: 125 EWKKAAIYAYLNNNGNKLKIATADV 149



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>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)|
          Length = 1412

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 42   NGGHPVCTEQQQHEDKTRH 98
            NGGH +C +QQQH     H
Sbjct: 955  NGGHAMCQQQQQHPQLHHH 973



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>E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B)|
          Length = 1355

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 42  NGGHPVCTEQQQHEDKTRH 98
           NGGH +C +QQQH     H
Sbjct: 898 NGGHAMCQQQQQHPQLHHH 916



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>E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (E75-A)|
          Length = 1199

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 42  NGGHPVCTEQQQHEDKTRH 98
           NGGH +C +QQQH     H
Sbjct: 742 NGGHAMCQQQQQHPQLHHH 760



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>JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylation protein 3C|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2C)
           (Gene amplified in squamous cell carcinoma 1 protein)
           (GASC-1 protein)
          Length = 1056

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 38  GKRRTSSVY*TTTARRQNSPPVRSTMTLLKKEKKVDDDSPVPLS 169
           G+ +TS  +    +R    PP RS MTL+K++   D++ P  LS
Sbjct: 563 GENKTSKSWRHPLSR----PPARSPMTLVKQQAPSDEELPEVLS 602


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,312,352
Number of Sequences: 219361
Number of extensions: 445063
Number of successful extensions: 1409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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