ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet16f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009421.1| Triticum aestivum clone wlmk1.pk0015.g6:fis, full... 553 e-154
2gb|BT009304.1| Triticum aestivum clone wlm1.pk0015.c4:fis, full ... 553 e-154
3gb|AC107798.10| Mus musculus chromosome 8, clone RP23-4D24, comp... 42 1.3
4gb|AC110255.10| Mus musculus, clone RP23-274K7, complete sequence 42 1.3
5emb|AL663107.13| Mouse DNA sequence from clone RP23-465K20 on ch... 42 1.3
6gb|AC154052.1| Drosophila melanogaster clone BACR01B21, complete... 40 4.9
7gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosom... 40 4.9
8gb|AC132297.4| Mus musculus chromosome 7 clone RP24-330M18, comp... 40 4.9
9gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, co... 40 4.9
10emb|AL032645.1|CEY67A6A Caenorhabditis elegans YAC Y67A6A, compl... 40 4.9
11gb|AC098723.3| Mus musculus BAC clone RP23-3D10 from 7, complete... 40 4.9
12ref|XM_722616.1| Plasmodium yoelii yoelii str. 17XNL rhoptry pro... 40 4.9
13emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chro... 40 4.9
14emb|AL354802.15| Human DNA sequence from clone RP11-54O10 on chr... 40 4.9
15emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chr... 40 4.9
16emb|CR749745.16| Zebrafish DNA sequence from clone DKEY-7O20 in ... 40 4.9
17gb|AC069458.2| Drosophila melanogaster 3L BAC RP98-23N10 (Roswel... 40 4.9
18dbj|AK159260.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 40 4.9
19dbj|AK159032.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 40 4.9
20dbj|AK168821.1| Mus musculus 17 days pregnant adult female amnio... 40 4.9
21dbj|AK169089.1| Mus musculus 17 days pregnant adult female amnio... 40 4.9
22dbj|AK078509.1| Mus musculus 12 days embryo female mullerian duc... 40 4.9
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
24dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
25gb|AE003516.4| Drosophila melanogaster chromosome 3L, section 69... 40 4.9
26gb|AC140403.3| Mus musculus BAC clone RP23-144M22 from 15, compl... 40 4.9
27gb|AC150275.2| Mus musculus BAC clone RP23-409M16 from 7, comple... 40 4.9
28emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on ch... 40 4.9
29emb|AL645477.8| Mouse DNA sequence from clone RP23-155L18 on chr... 40 4.9 
>gb|BT009421.1| Triticum aestivum clone wlmk1.pk0015.g6:fis, full insert mRNA
            sequence
          Length = 2253

 Score =  553 bits (279), Expect = e-154
 Identities = 350/373 (93%), Gaps = 3/373 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    gagtccttcaacctgcaaatttcttttcagacatcatcctgctgaactgagcagacttaa 61
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 2187 gagtccttcaacctgcaaacttcttttcagacatcatcctgctgaactgagcagtcttaa 2128

                                                                        
Query: 62   agtacatcgcggcgacaacgccgattatttgaaccaccctggctagacttacaactcaat 121
            | |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 2127 aatacatcgcggcgacaacgccgattatttgaagaaccctggctagacttacaactcaat 2068

                                                                        
Query: 122  aggtgaaataacaaagaaatgaaggcaacaagaaccaaatcaacaccccatgac---taa 178
            |||||||| ||||||||||||||||||||||||||||||||| |||||||||||   |||
Sbjct: 2067 aggtgaaacaacaaagaaatgaaggcaacaagaaccaaatcaccaccccatgactaataa 2008

                                                                        
Query: 179  taatatctgaacaccctacaaaatgtgtaactattttttccctgggtaccatgatgtggc 238
            |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 2007 taatatctgaacacgctacaaaatgtgtaactatattttccctgggcaccatgatgtggc 1948

                                                                        
Query: 239  accagctggctgcaaaagctccttgtcaggctaggggtgccgatcttgttgcagggaaga 298
            |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 1947 accagcaggctgcaaaagctccttgtcaggctagggttgccgatctcgttgcggggaaga 1888

                                                                        
Query: 299  cagcaggctcgtaatgaaactaagggccttcaagagaggctggggtggatgattttgctc 358
            |||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct: 1887 cagcaggctcgtgatgaaactaaggaccttcaagagcggctggggtggatgatttggctc 1828

                         
Query: 359  gcgttcctgcccg 371
             || |||||||||
Sbjct: 1827 acgctcctgcccg 1815
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>gb|BT009304.1| Triticum aestivum clone wlm1.pk0015.c4:fis, full insert mRNA sequence
          Length = 1511

 Score =  553 bits (279), Expect = e-154
 Identities = 350/373 (93%), Gaps = 3/373 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    gagtccttcaacctgcaaatttcttttcagacatcatcctgctgaactgagcagacttaa 61
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 1502 gagtccttcaacctgcaaacttcttttcagacatcatcctgctgaactgagcagtcttaa 1443

                                                                        
Query: 62   agtacatcgcggcgacaacgccgattatttgaaccaccctggctagacttacaactcaat 121
            | |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 1442 aatacatcgcggcgacaacgccgattatttgaagaaccctggctagacttacaactcaat 1383

                                                                        
Query: 122  aggtgaaataacaaagaaatgaaggcaacaagaaccaaatcaacaccccatgac---taa 178
            |||||||| ||||||||||||||||||||||||||||||||| |||||||||||   |||
Sbjct: 1382 aggtgaaacaacaaagaaatgaaggcaacaagaaccaaatcaccaccccatgactaataa 1323

                                                                        
Query: 179  taatatctgaacaccctacaaaatgtgtaactattttttccctgggtaccatgatgtggc 238
            |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 1322 taatatctgaacacgctacaaaatgtgtaactatattttccctgggcaccatgatgtggc 1263

                                                                        
Query: 239  accagctggctgcaaaagctccttgtcaggctaggggtgccgatcttgttgcagggaaga 298
            |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 1262 accagcaggctgcaaaagctccttgtcaggctagggttgccgatctcgttgcggggaaga 1203

                                                                        
Query: 299  cagcaggctcgtaatgaaactaagggccttcaagagaggctggggtggatgattttgctc 358
            |||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct: 1202 cagcaggctcgtgatgaaactaaggaccttcaagagcggctggggtggatgatttggctc 1143

                         
Query: 359  gcgttcctgcccg 371
             || |||||||||
Sbjct: 1142 acgctcctgcccg 1130
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>gb|AC107798.10| Mus musculus chromosome 8, clone RP23-4D24, complete sequence
          Length = 234420

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 113   caactcaataggtgaaataacaaagaaat 141
             ||||||||||||| ||| |||||||||||
Sbjct: 13759 caactcaataggttaaaaaacaaagaaat 13731
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>gb|AC110255.10| Mus musculus, clone RP23-274K7, complete sequence
          Length = 170587

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 113   caactcaataggtgaaataacaaagaaat 141
             ||||||||||||| ||| |||||||||||
Sbjct: 35932 caactcaataggttaaaaaacaaagaaat 35904
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>emb|AL663107.13| Mouse DNA sequence from clone RP23-465K20 on chromosome 11 Contains a
              novel gene (2210415F13Rik), an NADH dehydrogenase
              (ubiquinone) Fe-S protein 3 (Ndufs3) pseudogene, a novel
              pseudogene, a novel gene (1810065E05Rik), a novel gene
              similar to rat solute carrier family 11 member 1 (Slc11a1),
              a novel gene, the  Olfr30 gene for olfactory receptor 30,
              an olfactory receptor (MOR284-1P) pseudogene, the gene for
              olfactory receptor MOR284-2 (LOC216774),  a novel gene
              similar to MOR275 (LOC193140), a ribosomal protein L24
              (Rpl24) pseudogene, the gene for olfactory receptor
              MOR275-1, a DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5)
              pseudogene, an olfactory receptor (MOR275-3) pseudogene and
              a CpG island, complete sequence
          Length = 191700

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    aataggtgaaataacaaagaa 139
              |||||||||||||||||||||
Sbjct: 128351 aataggtgaaataacaaagaa 128331
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>gb|AC154052.1| Drosophila melanogaster clone BACR01B21, complete sequence
          Length = 167163

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   acaaaatgtgtaactatttt 215
             ||||||||||||||||||||
Sbjct: 95855 acaaaatgtgtaactatttt 95836
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>gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosome 7, complete
            sequence
          Length = 218177

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tgaaggcaacaagaaccaaa 160
            ||||||||||||||||||||
Sbjct: 5990 tgaaggcaacaagaaccaaa 6009
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>gb|AC132297.4| Mus musculus chromosome 7 clone RP24-330M18, complete sequence
          Length = 152941

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tgaaggcaacaagaaccaaa 160
             ||||||||||||||||||||
Sbjct: 60327 tgaaggcaacaagaaccaaa 60308
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>gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, complete sequence
          Length = 227026

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    tgaaataacaaagaaatgaa 144
              ||||||||||||||||||||
Sbjct: 120188 tgaaataacaaagaaatgaa 120207
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>emb|AL032645.1|CEY67A6A Caenorhabditis elegans YAC Y67A6A, complete sequence
          Length = 27185

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 gaaatgaaggcaacaagaac 156
           ||||||||||||||||||||
Sbjct: 677 gaaatgaaggcaacaagaac 696
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>gb|AC098723.3| Mus musculus BAC clone RP23-3D10 from 7, complete sequence
          Length = 227968

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    tgaaggcaacaagaaccaaa 160
              ||||||||||||||||||||
Sbjct: 172469 tgaaggcaacaagaaccaaa 172488
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>ref|XM_722616.1| Plasmodium yoelii yoelii str. 17XNL rhoptry protein (PY06945) partial
            mRNA
          Length = 6011

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  aaaatgtgtaactatttttt 217
            ||||||||||||||||||||
Sbjct: 4504 aaaatgtgtaactatttttt 4485
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>emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 88711

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   tcaataggtgaaataacaaagaaa 140
             ||||||||||||| ||||||||||
Sbjct: 32561 tcaataggtgaaagaacaaagaaa 32538
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>emb|AL354802.15| Human DNA sequence from clone RP11-54O10 on chromosome 13 Contains part
             of the TRPC4 gene transient receptor potential cation
             channel, subfamily C, member 4, complete sequence
          Length = 171184

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    cagacatcatcctgctgaac 48
             ||||||||||||||||||||
Sbjct: 58035 cagacatcatcctgctgaac 58016
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>emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chromosome 6p24.3-25.3
              Contains the 5' end of the F13A1 gene for coagulation
              factor XIII A chain precursor, a SNAP19 (sRNA activating
              protein complex 19kDa subunit) pseudogene and two putative
              novel gene, complete sequence
          Length = 147038

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    aacaaagaaatgaaggcaac 150
              ||||||||||||||||||||
Sbjct: 117630 aacaaagaaatgaaggcaac 117649
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>emb|CR749745.16| Zebrafish DNA sequence from clone DKEY-7O20 in linkage group 5,
             complete sequence
          Length = 110199

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   gtaatgaaactaagggcctt 328
             ||||||||||||||||||||
Sbjct: 48166 gtaatgaaactaagggcctt 48185
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>gb|AC069458.2| Drosophila melanogaster 3L BAC RP98-23N10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 169863

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    acaaaatgtgtaactatttt 215
              ||||||||||||||||||||
Sbjct: 168058 acaaaatgtgtaactatttt 168077
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>dbj|AK159260.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420013F22 product:ring finger protein
            121, full insert sequence
          Length = 2242

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tgaaggcaacaagaaccaaa 160
            ||||||||||||||||||||
Sbjct: 2169 tgaaggcaacaagaaccaaa 2188
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>dbj|AK159032.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K530038F17 product:ring finger protein 121, full
            insert sequence
          Length = 2345

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tgaaggcaacaagaaccaaa 160
            ||||||||||||||||||||
Sbjct: 2280 tgaaggcaacaagaaccaaa 2299
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>dbj|AK168821.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
            full-length enriched library, clone:I920057P05
            product:ring finger protein 121, full insert sequence
          Length = 2235

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tgaaggcaacaagaaccaaa 160
            ||||||||||||||||||||
Sbjct: 2156 tgaaggcaacaagaaccaaa 2175
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>dbj|AK169089.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
            full-length enriched library, clone:I920079L04
            product:ring finger protein 121, full insert sequence
          Length = 2235

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tgaaggcaacaagaaccaaa 160
            ||||||||||||||||||||
Sbjct: 2156 tgaaggcaacaagaaccaaa 2175
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>dbj|AK078509.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820427D03 product:hypothetical RING
            finger containing protein, full insert sequence
          Length = 2177

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tgaaggcaacaagaaccaaa 160
            ||||||||||||||||||||
Sbjct: 2104 tgaaggcaacaagaaccaaa 2123
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 132      acaaagaaatgaaggcaaca 151
                ||||||||||||||||||||
Sbjct: 42301280 acaaagaaatgaaggcaaca 42301299
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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   acaaagaaatgaaggcaaca 151
             ||||||||||||||||||||
Sbjct: 73237 acaaagaaatgaaggcaaca 73256
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>gb|AE003516.4| Drosophila melanogaster chromosome 3L, section 69 of 83 of the complete
              sequence
          Length = 305312

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    acaaaatgtgtaactatttt 215
              ||||||||||||||||||||
Sbjct: 301388 acaaaatgtgtaactatttt 301407
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>gb|AC140403.3| Mus musculus BAC clone RP23-144M22 from 15, complete sequence
          Length = 192144

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    aaataacaaagaaatgaagg 146
              ||||||||||||||||||||
Sbjct: 105558 aaataacaaagaaatgaagg 105577
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>gb|AC150275.2| Mus musculus BAC clone RP23-409M16 from 7, complete sequence
          Length = 224935

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    tgaaggcaacaagaaccaaa 160
              ||||||||||||||||||||
Sbjct: 156905 tgaaggcaacaagaaccaaa 156886
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>emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on chromosome 17, complete
              sequence
          Length = 122522

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    aagagaggctggggtggatg 349
              ||||||||||||||||||||
Sbjct: 112918 aagagaggctggggtggatg 112937
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>emb|AL645477.8| Mouse DNA sequence from clone RP23-155L18 on chromosome X, complete
             sequence
          Length = 189131

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    aacctgcaaatttcttttca 30
             ||||||||||||||||||||
Sbjct: 56723 aacctgcaaatttcttttca 56704


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,901,069
Number of Sequences: 3902068
Number of extensions: 3901069
Number of successful extensions: 77546
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77483
Number of HSP's gapped (non-prelim): 61
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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