ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet16e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SALL4_HUMAN (Q9UJQ4) Sal-like protein 4 (Zinc finger protein SALL4) 29 3.7
2PPO_MALDO (P43309) Polyphenol oxidase, chloroplast precursor (EC... 28 6.4
3GIS4_YEAST (Q04233) Protein GIS4 28 8.3
4AFAM_MOUSE (O89020) Afamin precursor (Alpha-albumin) (Alpha-Alb) 28 8.3

>SALL4_HUMAN (Q9UJQ4) Sal-like protein 4 (Zinc finger protein SALL4)|
          Length = 1053

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 15  MNRHNKNEKGNKDSGSEEKIRKEITHIC--ICYQKNDLSVFILHR 143
           +N    +E  ++D  + +++R+E TH+C   C +   +S F+ H+
Sbjct: 47  VNHPGNDEVASEDEATVKRLRREETHVCEKCCAEFFSISEFLEHK 91



to top

>PPO_MALDO (P43309) Polyphenol oxidase, chloroplast precursor (EC 1.10.3.1)|
           (PPO) (Catechol oxidase)
          Length = 593

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 114 FFDSIYIYV*FP-F*FSPHSRYLCFPFHFYYVY 19
           + D  Y  V FP      H+ +L FPFH YY+Y
Sbjct: 178 YCDGAYDQVGFPELELQIHNSWLFFPFHRYYLY 210



to top

>GIS4_YEAST (Q04233) Protein GIS4|
          Length = 774

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 12  TMNRHNKNEKGNKDSGSEEKIRK 80
           T N H  N KGN +S S+ +++K
Sbjct: 682 TKNSHKPNSKGNNESNSKNELKK 704



to top

>AFAM_MOUSE (O89020) Afamin precursor (Alpha-albumin) (Alpha-Alb)|
          Length = 611

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 43  ETKIAGVRRKSERKLHIYVYAI-KKMIFLFSFYIEAT*AWL*E 168
           E K    + KSE  LH+Y+Y + ++  F+F+  + A  AW  E
Sbjct: 145 EEKCQAYKNKSESFLHLYMYEVARRNPFVFAPVLLAVAAWFEE 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,738,134
Number of Sequences: 219361
Number of extensions: 335395
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top